View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5166_low_31 (Length: 251)
Name: NF5166_low_31
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5166_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 4 - 243
Target Start/End: Complemental strand, 56068344 - 56068105
Alignment:
| Q |
4 |
aacaacaataacaaactagtgtatagttctgcaatcagacattaaaagcctcaaaaagaggcataaataaacaaataaacctgctattagttgttgcaaa |
103 |
Q |
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| T |
56068344 |
aacaacaataacaaactagtgtatagttctgcaatcaaacattaaaagcctcaaaaggaggcataaataaacaaataaacctgctattagttgttgcaaa |
56068245 |
T |
|
| Q |
104 |
tataattaaccttggaagaatcgatgaatactaccttgctgctccttactactaccaatcatattcatagagaaattcttgtctccttcaatttccctat |
203 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56068244 |
tataattaaccttggaagaatcgatgaatactaccttcctgctccttattactaccaatcatattcatagagaaattcttgtctccttcaatttccctat |
56068145 |
T |
|
| Q |
204 |
acttgagaagataacccttaagaggctctgcatattcttc |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
56068144 |
acttgagaagataacccttaagaggctctgcatattcttc |
56068105 |
T |
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