View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5166_low_32 (Length: 251)

Name: NF5166_low_32
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5166_low_32
NF5166_low_32
[»] chr8 (10 HSPs)
chr8 (13-251)||(1969283-1969521)
chr8 (32-251)||(2007519-2007738)
chr8 (34-251)||(2004141-2004358)
chr8 (41-251)||(2011143-2011353)
chr8 (40-247)||(1965345-1965552)
chr8 (41-251)||(2437083-2437287)
chr8 (60-251)||(1963671-1963862)
chr8 (41-196)||(2017931-2018086)
chr8 (125-196)||(2014632-2014703)
chr8 (90-127)||(23269096-23269133)
[»] chr1 (2 HSPs)
chr1 (40-251)||(5906331-5906542)
chr1 (40-251)||(5902847-5903058)
[»] chr4 (1 HSPs)
chr4 (56-127)||(5890603-5890674)


Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 1969521 - 1969283
Alignment:
Q  13 cagaaactaacacactaaggatttttaagttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttcttt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1969521 cagaaactaacacactaaggatttttaagttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttcttt 1969422  T
Q  113 gattgcatttgaagcagcttcttttaattccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctct 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1969421 gattgcatttgaagcagcttcttttaattccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctct 1969322  T
Q  213 tctctttccacaatgccgttttcattaactcttggcctc 251  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1969321 tctctttccacaatgccgttttcattaactcttggcctc 1969283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 32 - 251
Target Start/End: Original strand, 2007519 - 2007738
Alignment:
Q  32 gatttttaagttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagct 131  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2007519 gatttttaagtttttctacaccaaatttctccacttaagtgctatttgagaaatagtttttgtagaagaaccatcttctttgactgcatttgaagcagct 2007618  T
Q  132 tcttttaattccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccacaatgccgt 231  Q
    |||||||||||||||||||||||||| || |||||||| || |||||||||||||||  ||||||||||||| |||||||| | |||||||| ||||| |    
T  2007619 tcttttaattccttcatgttattgcgtaatttctcaccctcgtctccttccatgagatacttgatcaccttagcaacctctaccctttccactatgccat 2007718  T
Q  232 tttcattaactcttggcctc 251  Q
    |||||||||| |||| ||||    
T  2007719 tttcattaacacttgccctc 2007738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 34 - 251
Target Start/End: Original strand, 2004141 - 2004358
Alignment:
Q  34 tttttaagttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagcttc 133  Q
    |||||| |||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||  ||||| ||||||| |||    
T  2004141 tttttaggttttcctacactaaatttctccacttgagtgctaattgagaaatagtgtttgtagaagaaccatcttctttgacagcattcgaagcagattc 2004240  T
Q  134 ttttaattccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccacaatgccgttt 233  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| |||||||| | |||||||| ||||| |||    
T  2004241 ttttaattccttcatgttattgcgcaatttctcaccttcttccccttccatgagacacttgatcaccttagcaacctctaccctttccactatgccattt 2004340  T
Q  234 tcattaactcttggcctc 251  Q
    |||||||| |||| ||||    
T  2004341 tcattaacacttgccctc 2004358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 41 - 251
Target Start/End: Original strand, 2011143 - 2011353
Alignment:
Q  41 gttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagcttcttttaat 140  Q
    ||||| || ||||||||||||||||||||||| || |||||||||||| ||||||||||| ||||||||||||| |||||| |||||| |||||||||||    
T  2011143 gtttttctgcaccaaatttctccacttgagtgttaattgagaaatagtctttgtagaagatccatcttctttgagtgcattagaagcaacttcttttaat 2011242  T
Q  141 tccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccacaatgccgttttcattaa 240  Q
    |||||||| |||||| |||| |||||||  ||||||||||||||||||||||||||||||||| |||||||  | ||||| ||||| || ||||| ||||    
T  2011243 tccttcatattattgtgcaatttctcacactcttctccttccatgagacgcttgatcaccttagcaacctccaccctttcgacaataccattttcgttaa 2011342  T
Q  241 ctcttggcctc 251  Q
    |||||||||||    
T  2011343 ctcttggcctc 2011353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 40 - 247
Target Start/End: Complemental strand, 1965552 - 1965345
Alignment:
Q  40 agttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagcttcttttaa 139  Q
    ||||||||| ||||||||||||||||||||||| || |||||| ||||| ||||||||||| ||||||||||||| |||||| |||||| || |||||||    
T  1965552 agttttcctgcaccaaatttctccacttgagtgttaattgagatatagtctttgtagaagatccatcttctttgagtgcattggaagcaactccttttaa 1965453  T
Q  140 ttccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccacaatgccgttttcatta 239  Q
     |||||||| |||||| |||| |||||||  ||||||||||||||||||| ||||||||||||| |||||||  | ||||| ||||| |||||||| |||    
T  1965452 ctccttcatattattgtgcaatttctcacactcttctccttccatgagacacttgatcaccttagcaacctccaccctttcgacaataccgttttcgtta 1965353  T
Q  240 actcttgg 247  Q
    ||||||||    
T  1965352 actcttgg 1965345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 41 - 251
Target Start/End: Complemental strand, 2437287 - 2437083
Alignment:
Q  41 gttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagcttcttttaat 140  Q
    |||||||| ||||||  ||||||||||||||| || |||||||||||| ||||| ||||||||||||||||||| |||||| |||||||||||||||| |    
T  2437287 gttttcctgcaccaagcttctccacttgagtgttaattgagaaatagtctttgtcgaagaaccatcttctttgagtgcattagaagcagcttcttttagt 2437188  T
Q  141 tccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccacaatgccgttttcattaa 240  Q
    || ||||   |||| | | ||||      |||||||||||||||||||| ||||||||||||| |||||||| | |||||||||||||| ||||||| ||    
T  2437187 tctttca---tattactccactt---tagttcttctccttccatgagacacttgatcaccttagcaacctctaccctttccacaatgccattttcatgaa 2437094  T
Q  241 ctcttggcctc 251  Q
    |||||||||||    
T  2437093 ctcttggcctc 2437083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 60 - 251
Target Start/End: Complemental strand, 1963862 - 1963671
Alignment:
Q  60 ctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagcttcttttaattccttcatgttattgcgca 159  Q
    |||||||||||||||| |||||||| ||| ||||||| |||||||||||||||   | || |   |||||||||||| ||||||||||| ||||| ||||    
T  1963862 ctccacttgagtgctaattgagaaagagtctttgtagtagaaccatcttctttatgtacactactagcagcttctttaaattccttcatattattacgca 1963763  T
Q  160 acttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccacaatgccgttttcattaactcttggcctc 251  Q
      ||| |||||||||| ||||||||||||| |||||||| || | |||  ||| | |||||||||||||| || || |||||||||||||||    
T  1963762 gtttcccaccttcttccccttccatgagacacttgatcaactcagcaatttctaccctttccacaatgccattctcgttaactcttggcctc 1963671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 196
Target Start/End: Original strand, 2017931 - 2018086
Alignment:
Q  41 gttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagcttcttttaat 140  Q
    ||||| ||| ||||||||||||||||||||||||| ||||||||  || |||||| |||| ||||| |||||   |||| |   ||||| ||||||||||    
T  2017931 gtttttctataccaaatttctccacttgagtgctaattgagaaagtgtctttgtaaaagatccatcatctttatgtgcactattagcagattcttttaat 2018030  T
Q  141 tccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgat 196  Q
    |||||||| || |||||||  ||| |||||||||| ||||||||||||| ||||||    
T  2018031 tccttcatatttttgcgcagtttcccaccttcttccccttccatgagacacttgat 2018086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 2014632 - 2014703
Alignment:
Q  125 agcagcttcttttaattccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgat 196  Q
    ||||| |||||||||||||||||| || |||||||  ||| |||||||||| ||||||||||||| ||||||    
T  2014632 agcagattcttttaattccttcatatttttgcgcagtttcccaccttcttccccttccatgagacacttgat 2014703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 23269133 - 23269096
Alignment:
Q  90 tttgtagaagaaccatcttctttgattgcatttgaagc 127  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  23269133 tttgtagaagaaccatcttctttgagtgcattagaagc 23269096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 40 - 251
Target Start/End: Complemental strand, 5906542 - 5906331
Alignment:
Q  40 agttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagcttcttttaa 139  Q
    ||||||| | |||||||||| |||||||| |||||| |||||||| ||| ||| ||||||| ||||||||||  | |||||| | ||| |||||||| ||    
T  5906542 agttttcatgcaccaaatttttccacttgtgtgctaattgagaaacagtctttctagaagacccatcttcttgaagtgcattagtagctgcttctttcaa 5906443  T
Q  140 ttccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccacaatgccgttttcatta 239  Q
    ||||||||| ||||||||||| ||||||| |||||| ||||||||||||| |||||||||||||  |||||||   |||||||||||||| |||||||||    
T  5906442 ttccttcatattattgcgcaatttctcacattcttccccttccatgagacacttgatcaccttagaaacctctatcctttccacaatgccattttcatta 5906343  T
Q  240 actcttggcctc 251  Q
    ||||||||||||    
T  5906342 actcttggcctc 5906331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 40 - 251
Target Start/End: Complemental strand, 5903058 - 5902847
Alignment:
Q  40 agttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagcttcttttaa 139  Q
    ||||||| | |||||||||||||||||||||||||| ||||||||| || ||| ||||||| || ||||||||||  ||||| | || ||||||||||||    
T  5903058 agttttcatgcaccaaatttctccacttgagtgctaattgagaaatggtctttctagaagacccgtcttctttgagcgcattagtagaagcttcttttaa 5902959  T
Q  140 ttccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccacaatgccgttttcatta 239  Q
    ||||||||| ||||||||||| ||||||| |||||||||||||||||||| ||||||||  |||  ||  || || ||||| |||||||| || ||||||    
T  5902958 ttccttcatattattgcgcaaattctcacattcttctccttccatgagacccttgatcaatttagaaatttcctccctttcaacaatgccattatcatta 5902859  T
Q  240 actcttggcctc 251  Q
    || |||||||||    
T  5902858 acccttggcctc 5902847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 5890603 - 5890674
Alignment:
Q  56 atttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagc 127  Q
    |||||||||||||||||||| |||||||| | | ||||||||||||||||||||||||| |||||| |||||    
T  5890603 atttctccacttgagtgctaattgagaaaaaatgtttgtagaagaaccatcttctttgagtgcattagaagc 5890674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University