View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5166_low_35 (Length: 240)
Name: NF5166_low_35
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5166_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 31543652 - 31543430
Alignment:
| Q |
1 |
catcagatatgttcaaatggtttccgcgtttgcatactgtttttctttctcacaacaacttaagtggaactcttcccccttctcttggggaatcttcaat |
100 |
Q |
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| T |
31543652 |
catcagatatgttcaaatggtttccgcgtttgcatactgtttttctttctcacaacaacttaagtggaactcttcccccttctcttggggaatcttcaat |
31543553 |
T |
|
| Q |
101 |
aaggtatttgcgactcaataaccaaggggcgtttagtgggtttatcggtacaattgatgttatatcatccatgagattcttgtctcaggcgtggcttaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
31543552 |
aaggtatttgcgactcaataaccaaggggcgtttagtgggtttaccggtacaattgatgttatatcatctatgaggttcttgtctcaggcgtggcttaac |
31543453 |
T |
|
| Q |
201 |
aacaacgtgttcgcaggtccaat |
223 |
Q |
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|||||| |||||||||||||||| |
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| T |
31543452 |
aacaacatgttcgcaggtccaat |
31543430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 31550994 - 31551206
Alignment:
| Q |
1 |
catcagatatgttcaaatggtttccgcgtttgcatactgtttttctttctcacaacaacttaagtggaactcttcccccttctcttggggaatcttcaat |
100 |
Q |
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||||||| ||||| | |||||||| | ||||||||||||| ||| |||||||||||| | ||||||| ||||||| |||||||| ||||| | | |
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| T |
31550994 |
catcagacgtgttcgattggtttccaagattgcatactgtttctctctctcacaacaacatccgtggaacacttcccctgtctcttggaaaatctgtagt |
31551093 |
T |
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| Q |
101 |
aaggtatttgcgactcaataa-ccaaggggcgtttagtgggtttatcggtacaattgatgttatatcatccatgagattcttgtctcaggcgtggcttaa |
199 |
Q |
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| T |
31551094 |
aaggtatttacgactcaacaaaccaagacagattgaatgggtttacgggtacaattgaagtgatatcgtctatgagatttttgtctcaagcgtggcttaa |
31551193 |
T |
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| Q |
200 |
caacaacgtgttc |
212 |
Q |
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|||||||| |||| |
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| T |
31551194 |
caacaacgcgttc |
31551206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 206
Target Start/End: Complemental strand, 31534925 - 31534800
Alignment:
| Q |
81 |
tctcttggggaatcttcaataaggtatttgcgactcaataaccaaggggcgtttagtgggtttatcggtacaattgatgttatatcatccatgagattct |
180 |
Q |
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||||||||| ||||| | ||| ||||||||| ||||| ||||||||| | ||||||||| |||| |||||| ||||||||||||||||| | |
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| T |
31534925 |
tctcttgggaaatctaaagtaaagtatttgcggttcaatgaccaaggggaatacagtgggttttcgggtagaattgacgttatatcatccatgagtaatt |
31534826 |
T |
|
| Q |
181 |
tgtctcaggcgtggcttaacaacaac |
206 |
Q |
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||||||||||||||||| | |||||| |
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| T |
31534825 |
tgtctcaggcgtggcttcagaacaac |
31534800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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