View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5166_low_36 (Length: 239)
Name: NF5166_low_36
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5166_low_36 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 3110706 - 3110486
Alignment:
| Q |
19 |
atttctcattctaaacaaaacccatcatttgaaatacatgacttgtttgagaagctattagagggtgttgatgttgttgagaataaaaaacattacttgg |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3110706 |
atttttcattctaaacaaaacccatcatttgaaatacatgacttgtttgagaagctattagagggtgttgatgttgttgagaataaaaaacattacttgg |
3110607 |
T |
|
| Q |
119 |
ctatactcagagcatttgatgtgtttgctaaagcttgtgttggtcttaatatgtttgatgaagcatttgatttcttgtttcattttcaagttactaggtt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3110606 |
ctatactcagagcatttgatgtgtttgctaaagcttgtgttggtcttaacatgtttgatggagcatttgatttcttgtttcattttcaagttactaggtt |
3110507 |
T |
|
| Q |
219 |
tgagattcttcctagtattgt |
239 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
3110506 |
tgagattcttcctagtattgt |
3110486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 41626165 - 41626368
Alignment:
| Q |
18 |
aatttctcattctaaacaaaacccatcatttgaaatacatgacttgtttgagaagctattagagggtgttgatgttgttgagaataaaaaacattacttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||| ||||||||| | |||| || ||||||| ||||||||| |
|
|
| T |
41626165 |
aatttctcattctaaacaaaacccattatttgaaattcatgacttgtttgagaaactattggagggtgttaa---tgttaaggataaaaatcattacttg |
41626261 |
T |
|
| Q |
118 |
gctatactcagagcatttgatgtgtttgctaaagcttgtgttggtcttaatatgtttgatgaagcatttgatttcttgtttcattttcaagttactaggt |
217 |
Q |
| |
|
|| ||||| |||| || ||||| ||||||||||||||||||||| ||||||||||| || |||||||| ||||| |||||| ||| |||| |
|
|
| T |
41626262 |
------cttagagcttttgttgggtttgttaaagcttgtgttggtcttaacatgtttgatgatgctattgatttcatgtttatgtttcaaattaggaggt |
41626355 |
T |
|
| Q |
218 |
ttgagattcttcc |
230 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
41626356 |
ttgggattcttcc |
41626368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University