View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5166_low_39 (Length: 234)

Name: NF5166_low_39
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5166_low_39
NF5166_low_39
[»] chr1 (6 HSPs)
chr1 (26-175)||(7634886-7635035)
chr1 (28-76)||(27529810-27529858)
chr1 (28-68)||(21019222-21019262)
chr1 (28-66)||(41059058-41059096)
chr1 (27-68)||(42021837-42021878)
chr1 (91-127)||(6071817-6071853)
[»] chr3 (8 HSPs)
chr3 (26-174)||(22994436-22994593)
chr3 (93-165)||(11636118-11636189)
chr3 (34-123)||(20729337-20729425)
chr3 (28-68)||(16243286-16243326)
chr3 (28-66)||(3839930-3839968)
chr3 (26-68)||(6445505-6445547)
chr3 (28-68)||(34984596-34984636)
chr3 (91-127)||(53815018-53815054)
[»] chr4 (10 HSPs)
chr4 (28-164)||(48014786-48014922)
chr4 (91-142)||(37741479-37741530)
chr4 (28-102)||(19826783-19826856)
chr4 (32-127)||(19819998-19820091)
chr4 (98-137)||(19861211-19861250)
chr4 (98-137)||(37104165-37104204)
chr4 (29-126)||(52007287-52007383)
chr4 (97-142)||(53093753-53093798)
chr4 (28-68)||(35509294-35509334)
chr4 (28-68)||(44164108-44164148)
[»] chr5 (7 HSPs)
chr5 (28-127)||(2836727-2836825)
chr5 (28-102)||(18031791-18031864)
chr5 (28-68)||(33551448-33551488)
chr5 (98-137)||(42061523-42061562)
chr5 (34-102)||(2837527-2837594)
chr5 (91-127)||(39191378-39191414)
chr5 (28-68)||(40916733-40916773)
[»] chr6 (8 HSPs)
chr6 (93-164)||(13022200-13022271)
chr6 (101-174)||(11193468-11193541)
chr6 (91-142)||(6512428-6512479)
chr6 (85-127)||(28666087-28666129)
chr6 (93-174)||(12991573-12991654)
chr6 (32-72)||(11247143-11247183)
chr6 (28-56)||(20185085-20185113)
chr6 (28-56)||(22150878-22150906)
[»] chr7 (4 HSPs)
chr7 (28-96)||(18563290-18563358)
chr7 (32-76)||(13810263-13810307)
chr7 (91-127)||(45288055-45288091)
chr7 (91-127)||(45291391-45291427)
[»] chr2 (5 HSPs)
chr2 (32-102)||(30925832-30925902)
chr2 (28-127)||(5104998-5105095)
chr2 (28-68)||(3874596-3874636)
chr2 (91-127)||(10599998-10600034)
chr2 (28-68)||(43723009-43723049)
[»] chr8 (3 HSPs)
chr8 (91-142)||(38249275-38249326)
chr8 (28-102)||(12582299-12582372)
chr8 (26-68)||(17895361-17895403)
[»] scaffold0080 (1 HSPs)
scaffold0080 (19-127)||(26301-26408)


Alignment Details
Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 26 - 175
Target Start/End: Complemental strand, 7635035 - 7634886
Alignment:
Q  26 gtgctccaaatcgtgacacgtttttcagtaaccgtgtcacgatttcactttaatcattatcttcagtttttcttgctgtttaaggttgcttgtgaactca 125  Q
    |||||| |||||||||| |||||||||| |||||||||||||||||||||| |||| | |||||||||||||||| |||||||| || ||||||||||||    
T  7635035 gtgctctaaatcgtgacgcgtttttcagcaaccgtgtcacgatttcactttcatcactttcttcagtttttcttgttgtttaagcttacttgtgaactca 7634936  T
Q  126 aagtatcatgaatttacccgaaaaattacgtaatgacaaggtgccatcac 175  Q
    || |||||||  ||||| | |||||||| |||||||||| ||| ||||||    
T  7634935 aaatatcatgcctttacactaaaaattatgtaatgacaaagtgtcatcac 7634886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 27529858 - 27529810
Alignment:
Q  28 gctccaaatcgtgacacgtttttcagtaaccgtgtcacgatttcacttt 76  Q
    |||| ||||||||||||||||||||  ||||||||||||||||||||||    
T  27529858 gctcaaaatcgtgacacgtttttcatcaaccgtgtcacgatttcacttt 27529810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 21019222 - 21019262
Alignment:
Q  28 gctccaaatcgtgacacgtttttcagtaaccgtgtcacgat 68  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  21019222 gctccaaatcgtgacacgtttttcagtaatcgtgacacgat 21019262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 41059058 - 41059096
Alignment:
Q  28 gctccaaatcgtgacacgtttttcagtaaccgtgtcacg 66  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  41059058 gctccaaatcgtgacacgtttttcagtaatcgtgacacg 41059096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 42021878 - 42021837
Alignment:
Q  27 tgctccaaatcgtgacacgtttttcagtaaccgtgtcacgat 68  Q
    |||||||||||||||||| ||||||||||| |||| ||||||    
T  42021878 tgctccaaatcgtgacacatttttcagtaatcgtgacacgat 42021837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 6071817 - 6071853
Alignment:
Q  91 gtttttcttgctgtttaaggttgcttgtgaactcaaa 127  Q
    |||||||||| |||||||| |||||||||||||||||    
T  6071817 gtttttcttgttgtttaagcttgcttgtgaactcaaa 6071853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 22994436 - 22994593
Alignment:
Q  26 gtgctccaaatcgtgacacgtttttcagtaaccgtgtcacgatttcactttaatcattatcttcagttttt---------cttgctgtttaaggttgctt 116  Q
    |||||||||||||||||||||||||||  ||||||||||| |||||||||| | ||  |||||||||||||         ||||||||||||| ||||||    
T  22994436 gtgctccaaatcgtgacacgtttttcaacaaccgtgtcactatttcactttcaccacaatcttcagtttttcttgctttccttgctgtttaagcttgctt 22994535  T
Q  117 gtgaactcaaagtatcatgaatttacccgaaaaattacgtaatgacaaggtgccatca 174  Q
    ||| ||||||| |||||| |  |||| | |||||||| |||||||||||||| |||||    
T  22994536 gtggactcaaaatatcataatattacactaaaaattatgtaatgacaaggtgtcatca 22994593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 11636189 - 11636118
Alignment:
Q  93 ttttcttgctgtttaaggttgcttgtgaactcaaagtatcatgaatttacccgaaaaattacgtaatgacaag 165  Q
    |||||||| |||||||| |||||||||||||| || ||||||||||||||   ||||||||||||||||||||    
T  11636189 ttttcttg-tgtttaagcttgcttgtgaactctaaatatcatgaatttacattaaaaattacgtaatgacaag 11636118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 20729337 - 20729425
Alignment:
Q  34 aatcgtgacacgtttttcagtaaccgtgtcacgatttcactttaatcattatcttcagtttttcttgctgtttaaggttgcttgtgaact 123  Q
    ||||||||||||||||||||| | |||| || |||| ||||||  ||| | |||||  |||||||||||| ||||| |||||||||||||    
T  20729337 aatcgtgacacgtttttcagttatcgtgacatgatt-cactttcttcagtttcttcgatttttcttgctgcttaagcttgcttgtgaact 20729425  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 16243326 - 16243286
Alignment:
Q  28 gctccaaatcgtgacacgtttttcagtaaccgtgtcacgat 68  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  16243326 gctccaaatcgtgacacgtttttcagtaatcgtgacacgat 16243286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 3839968 - 3839930
Alignment:
Q  28 gctccaaatcgtgacacgtttttcagtaaccgtgtcacg 66  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  3839968 gctccaaatcgtgacacgtttttcagtaatcgtgacacg 3839930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 6445505 - 6445547
Alignment:
Q  26 gtgctccaaatcgtgacacgtttttcagtaaccgtgtcacgat 68  Q
    ||||| ||||||||||||||||||||||||| |||| ||||||    
T  6445505 gtgcttcaaatcgtgacacgtttttcagtaatcgtgacacgat 6445547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 34984596 - 34984636
Alignment:
Q  28 gctccaaatcgtgacacgtttttcagtaaccgtgtcacgat 68  Q
    ||||||||||||| ||||||||||||||| |||| ||||||    
T  34984596 gctccaaatcgtgtcacgtttttcagtaatcgtgacacgat 34984636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 53815054 - 53815018
Alignment:
Q  91 gtttttcttgctgtttaaggttgcttgtgaactcaaa 127  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  53815054 gtttttcttgctgcttaagcttgcttgtgaactcaaa 53815018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 48014786 - 48014922
Alignment:
Q  28 gctccaaatcgtgacacgtttttcagtaaccgtgtcacgatttcactttaatcattatcttcagtttttcttgctgtttaaggttgcttgtgaactcaaa 127  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||  ||| | | |   | |||||||| ||| |||| |||||||||||||| ||    
T  48014786 gctccaaatcgtgacacgtttttcagcaaccgtgtcacgatttcactttcttcagtttttcttgcttttcttgttgtataagcttgcttgtgaactccaa 48014885  T
Q  128 gtatcatgaatttacccgaaaaattacgtaatgacaa 164  Q
     || ||||| |||||   |||||||||||||||||||    
T  48014886 ataacatgattttacattaaaaattacgtaatgacaa 48014922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 91 - 142
Target Start/End: Original strand, 37741479 - 37741530
Alignment:
Q  91 gtttttcttgctgtttaaggttgcttgtgaactcaaagtatcatgaatttac 142  Q
    ||||||||||||||||||| |||||||||||||| || ||||||||||||||    
T  37741479 gtttttcttgctgtttaagcttgcttgtgaactccaaatatcatgaatttac 37741530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 19826856 - 19826783
Alignment:
Q  28 gctccaaatcgtgacacgtttttcagtaaccgtgtcacgatttcactttaatcattatcttcagtttttcttgct 102  Q
    ||||||||||||||||||||||||||||| |||| ||||||  | ||||  ||| | ||||||||||||||||||    
T  19826856 gctccaaatcgtgacacgtttttcagtaatcgtgacacgatccc-cttttttcagtttcttcagtttttcttgct 19826783  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 127
Target Start/End: Complemental strand, 19820091 - 19819998
Alignment:
Q  32 caaatcgtgacacgtttttcagtaaccgtgtcacgatttcactttaatcattatcttcagtttttcttgctgtttaaggttgcttgtgaactcaaa 127  Q
    ||||||||||||||||||||||||| |||| |||||  || | ||  | | | ||||||||||||||||||  ||||  |||||||||||||||||    
T  19820091 caaatcgtgacacgtttttcagtaatcgtgacacga--tccccttttttagtttcttcagtttttcttgctacttaatcttgcttgtgaactcaaa 19819998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 19861211 - 19861250
Alignment:
Q  98 ttgctgtttaaggttgcttgtgaactcaaagtatcatgaa 137  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  19861211 ttgctgtttaagcttgcttgtgaactcaaaatatcatgaa 19861250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 37104165 - 37104204
Alignment:
Q  98 ttgctgtttaaggttgcttgtgaactcaaagtatcatgaa 137  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  37104165 ttgctgtttaagcttgcttgtgaactcaaaatatcatgaa 37104204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 52007287 - 52007383
Alignment:
Q  29 ctccaaatcgtgacacgtttttcagtaaccgtgtcacgatttcactttaatcattatcttcagtttttcttgctgtttaaggttgcttgtgaactcaa 126  Q
    |||||||||||||||||||||| ||| | |||| || |||| | ||||  ||| | |||||  |||||||||||| ||||| |||||| |||||||||    
T  52007287 ctccaaatcgtgacacgttttttagttatcgtgacatgattcc-ctttcttcagtttcttcgatttttcttgctgcttaagcttgcttttgaactcaa 52007383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 53093798 - 53093753
Alignment:
Q  97 cttgctgtttaaggttgcttgtgaactcaaagtatcatgaatttac 142  Q
    ||||||||||||| |||||||||||||||||  | |||||||||||    
T  53093798 cttgctgtttaagcttgcttgtgaactcaaaagaccatgaatttac 53093753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 35509334 - 35509294
Alignment:
Q  28 gctccaaatcgtgacacgtttttcagtaaccgtgtcacgat 68  Q
    |||||||||| |||||||||||||||||| |||| ||||||    
T  35509334 gctccaaatcatgacacgtttttcagtaatcgtgacacgat 35509294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 44164148 - 44164108
Alignment:
Q  28 gctccaaatcgtgacacgtttttcagtaaccgtgtcacgat 68  Q
    ||||||||||||| ||||||||||||||| |||| ||||||    
T  44164148 gctccaaatcgtgtcacgtttttcagtaatcgtgacacgat 44164108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 28 - 127
Target Start/End: Complemental strand, 2836825 - 2836727
Alignment:
Q  28 gctccaaatcgtgacacgtttttcagtaaccgtgtcacgatttcactttaatcattatcttcagtttttcttgctgtttaaggttgcttgtgaactcaaa 127  Q
    ||||||||||||||||||||||||||||| |||| ||||||| | ||||  ||| | ||||||||||||||||||| ||||| |||||||||||||||||    
T  2836825 gctccaaatcgtgacacgtttttcagtaatcgtgacacgattcc-cttttttcagtttcttcagtttttcttgctgcttaagtttgcttgtgaactcaaa 2836727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 18031864 - 18031791
Alignment:
Q  28 gctccaaatcgtgacacgtttttcagtaaccgtgtcacgatttcactttaatcattatcttcagtttttcttgct 102  Q
    ||||||||| ||||||||||||||||||| |||| ||||||| || |||  ||| | ||||||||||||||||||    
T  18031864 gctccaaattgtgacacgtttttcagtaatcgtgacacgattcca-ttttttcagtttcttcagtttttcttgct 18031791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 33551488 - 33551448
Alignment:
Q  28 gctccaaatcgtgacacgtttttcagtaaccgtgtcacgat 68  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  33551488 gctccaaatcgtgacacgtttttcagtaatcgtgacacgat 33551448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 42061562 - 42061523
Alignment:
Q  98 ttgctgtttaaggttgcttgtgaactcaaagtatcatgaa 137  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  42061562 ttgctgtttaagcttgcttgtgaactcaaaatatcatgaa 42061523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 2837527 - 2837594
Alignment:
Q  34 aatcgtgacacgtttttcagtaaccgtgtcacgatttcactttaatcattatcttcagtttttcttgct 102  Q
    ||||||||||||||||||||||| |||| || || ||| ||||  ||| | ||||||||||||||||||    
T  2837527 aatcgtgacacgtttttcagtaatcgtgacatga-ttccctttcttcagtttcttcagtttttcttgct 2837594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 39191414 - 39191378
Alignment:
Q  91 gtttttcttgctgtttaaggttgcttgtgaactcaaa 127  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  39191414 gtttttcttgctgcttaagcttgcttgtgaactcaaa 39191378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 40916733 - 40916773
Alignment:
Q  28 gctccaaatcgtgacacgtttttcagtaaccgtgtcacgat 68  Q
    ||||||||||||||||| ||||||||||| |||| ||||||    
T  40916733 gctccaaatcgtgacacatttttcagtaatcgtgacacgat 40916773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 93 - 164
Target Start/End: Original strand, 13022200 - 13022271
Alignment:
Q  93 ttttcttgctgtttaaggttgcttgtgaactcaaagtatcatgaatttacccgaaaaattacgtaatgacaa 164  Q
    |||||||| |||||||| |||||||||||||| || ||||||||||||||   |||||||||||||||||||    
T  13022200 ttttcttgttgtttaagcttgcttgtgaactccaaatatcatgaatttacattaaaaattacgtaatgacaa 13022271  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 174
Target Start/End: Original strand, 11193468 - 11193541
Alignment:
Q  101 ctgtttaaggttgcttgtgaactcaaagtatcatgaatttacccgaaaaattacgtaatgacaaggtgccatca 174  Q
    ||||||||| |||||||||||||| || |||||| |||||||   |||||||||||||||||||| || |||||    
T  11193468 ctgtttaagcttgcttgtgaactccaaatatcataaatttacataaaaaattacgtaatgacaagatgtcatca 11193541  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 142
Target Start/End: Complemental strand, 6512479 - 6512428
Alignment:
Q  91 gtttttcttgctgtttaaggttgcttgtgaactcaaagtatcatgaatttac 142  Q
    ||||| ||||||||||||| |||||||||||||||||  |||||||||||||    
T  6512479 gttttccttgctgtttaagcttgcttgtgaactcaaaagatcatgaatttac 6512428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 28666087 - 28666129
Alignment:
Q  85 tcttcagtttttcttgctgtttaaggttgcttgtgaactcaaa 127  Q
    ||||||||||||||||||| ||||| |||||||||||||||||    
T  28666087 tcttcagtttttcttgctgcttaagcttgcttgtgaactcaaa 28666129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 174
Target Start/End: Original strand, 12991573 - 12991654
Alignment:
Q  93 ttttcttgctgtttaaggttgcttgtgaactcaaagtatcatgaatttacccgaaaaattacgtaatgacaaggtgccatca 174  Q
    |||||||| || ||||| |||||||||||||| || ||||||||||||||   ||||| |||||||| ||||| || |||||    
T  12991573 ttttcttgttgattaagcttgcttgtgaactccaaatatcatgaatttacattaaaaaatacgtaattacaagatgtcatca 12991654  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 11247183 - 11247143
Alignment:
Q  32 caaatcgtgacacgtttttcagtaaccgtgtcacgatttca 72  Q
    ||||||||||||||||||||||||| |||||||| ||||||    
T  11247183 caaatcgtgacacgtttttcagtaaacgtgtcacaatttca 11247143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 56
Target Start/End: Complemental strand, 20185113 - 20185085
Alignment:
Q  28 gctccaaatcgtgacacgtttttcagtaa 56  Q
    |||||||||||||||||||||||||||||    
T  20185113 gctccaaatcgtgacacgtttttcagtaa 20185085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 56
Target Start/End: Original strand, 22150878 - 22150906
Alignment:
Q  28 gctccaaatcgtgacacgtttttcagtaa 56  Q
    |||||||||||||||||||||||||||||    
T  22150878 gctccaaatcgtgacacgtttttcagtaa 22150906  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 18563290 - 18563358
Alignment:
Q  28 gctccaaatcgtgacacgtttttcagtaaccgtgtcacgatttcactttaatcattatcttcagttttt 96  Q
    |||||||||||||||| | ||||||| ||||||||||||||||||||||  || || ||||||||||||    
T  18563290 gctccaaatcgtgacatgcttttcagcaaccgtgtcacgatttcactttcttccttttcttcagttttt 18563358  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 13810263 - 13810307
Alignment:
Q  32 caaatcgtgacacgtttttcagtaaccgtgtcacgatttcacttt 76  Q
    ||||||||||||||||||| || ||  ||||||||||||||||||    
T  13810263 caaatcgtgacacgtttttaagcaattgtgtcacgatttcacttt 13810307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 45288055 - 45288091
Alignment:
Q  91 gtttttcttgctgtttaaggttgcttgtgaactcaaa 127  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  45288055 gtttttcttgctgcttaagcttgcttgtgaactcaaa 45288091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 45291391 - 45291427
Alignment:
Q  91 gtttttcttgctgtttaaggttgcttgtgaactcaaa 127  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  45291391 gtttttcttgctgcttaagcttgcttgtgaactcaaa 45291427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 30925902 - 30925832
Alignment:
Q  32 caaatcgtgacacgtttttcagtaaccgtgtcacgatttcactttaatcattatcttcagtttttcttgct 102  Q
    |||||||||||||||||||||| |||| ||||||||||||||||| || | | |||||| |||||| ||||    
T  30925902 caaatcgtgacacgtttttcagcaaccttgtcacgatttcactttcattagtttcttcaatttttcctgct 30925832  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 127
Target Start/End: Complemental strand, 5105095 - 5104998
Alignment:
Q  28 gctccaaatcgtgacacgtttttcagtaaccgtgtcacgatttcactttaatcattatcttcagtttttcttgctgtttaaggttgcttgtgaactcaaa 127  Q
    |||||||| |||| ||||||||||||||| |||| ||||||  |  |||  |||   ||||||||||||||||||| ||||  |||||||||||||||||    
T  5105095 gctccaaaccgtgtcacgtttttcagtaatcgtgacacgatcccctttt--tcagcttcttcagtttttcttgctgcttaatcttgcttgtgaactcaaa 5104998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 3874636 - 3874596
Alignment:
Q  28 gctccaaatcgtgacacgtttttcagtaaccgtgtcacgat 68  Q
    ||||||||||||||||||||||||| ||| |||| ||||||    
T  3874636 gctccaaatcgtgacacgtttttcaataatcgtgacacgat 3874596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 10600034 - 10599998
Alignment:
Q  91 gtttttcttgctgtttaaggttgcttgtgaactcaaa 127  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  10600034 gtttttcttgctgcttaagcttgcttgtgaactcaaa 10599998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 43723049 - 43723009
Alignment:
Q  28 gctccaaatcgtgacacgtttttcagtaaccgtgtcacgat 68  Q
    ||||||||||| ||||||||||||||||| |||| ||||||    
T  43723049 gctccaaatcgggacacgtttttcagtaatcgtgacacgat 43723009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 142
Target Start/End: Original strand, 38249275 - 38249326
Alignment:
Q  91 gtttttcttgctgtttaaggttgcttgtgaactcaaagtatcatgaatttac 142  Q
    ||||| ||||||||||||| ||||||||||| |||||  |||||||||||||    
T  38249275 gttttccttgctgtttaagcttgcttgtgaattcaaaagatcatgaatttac 38249326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 12582372 - 12582299
Alignment:
Q  28 gctccaaatcgtgacacgtttttcagtaaccgtgtcacgatttcactttaatcattatcttcagtttttcttgct 102  Q
    ||||||||||||||||||||||||| ||| |||| ||||||  | ||||  ||| | ||||||||||||||||||    
T  12582372 gctccaaatcgtgacacgtttttcaataatcgtgacacgatccc-cttttttcagtttcttcagtttttcttgct 12582299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 17895361 - 17895403
Alignment:
Q  26 gtgctccaaatcgtgacacgtttttcagtaaccgtgtcacgat 68  Q
    ||||| ||||||||||||||||||||||||| |||| ||||||    
T  17895361 gtgcttcaaatcgtgacacgtttttcagtaatcgtgacacgat 17895403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 26408 - 26301
Alignment:
Q  19 tcatcccgtgctccaaatcgtgacacgtttttcagtaaccgtgtcacgatttcactttaatcattatcttcagtttttcttgctgtttaaggttgcttgt 118  Q
    |||||| ||||| |||||||||||||| ||||||  || |||| ||||||||  ||||  |||  ||||||  |||||| ||||| ||| | ||||||||    
T  26408 tcatcctgtgcttcaaatcgtgacacg-ttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcatgctgcttatgtttgcttgt 26310  T
Q  119 gaactcaaa 127  Q
    |||||||||    
T  26309 gaactcaaa 26301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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