View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5166_low_4 (Length: 458)
Name: NF5166_low_4
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5166_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 49766812 - 49766414
Alignment:
| Q |
1 |
tcttcttctctctcactctctgtttgtcctactaaaaatgaaaatcatggtaaacattaccaccatgaatactattctagaaaaactcgtattccttttc |
100 |
Q |
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| T |
49766812 |
tcttcttctctctcactctctgtttgtcctactaaaaatgaaaatcatggtaaacattaccaccatgaatactattctagaaaaactcgtattccttttc |
49766713 |
T |
|
| Q |
101 |
tcttagctaagagaaagaagaagaaaacctctgtttctgcatctgctacgacgtctaatatcattttgaaacgtagcaaatcaactgcaacaccaagaag |
200 |
Q |
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| T |
49766712 |
tcttagctaagaaaaagaagaagaaaacctctgtttctgcatctgctacgtcgtctaatatcattttgaaacgtagcaaatcaactgcaacaccaagaag |
49766613 |
T |
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| Q |
201 |
aggtagtaactctatggttgatgcagatgatgaatattttagtccaagaaaaagaaatgggttttggtcttttctctatcattcttcaaaatcttcaact |
300 |
Q |
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| T |
49766612 |
aggtagtaactctatggttgatgcagatgatgaatattttagtccaagaaaaagaaatgggttttggtcttttctctatcattcttcaaaatcttcaact |
49766513 |
T |
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| Q |
301 |
tcttccaagagctttagtaatactactgcttcagctaagcttaaggaaaagtgttgttcaggttcttctttaggaagaaagaacgacattgttattgtt |
399 |
Q |
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| T |
49766512 |
tcttccaagagctttagtaatactactgcttcagctaagcttaaggaaaagtgttgttcaggttcttctttaggaagaaagaacgacattgttattgtt |
49766414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 447
Target Start/End: Complemental strand, 49766396 - 49766366
Alignment:
| Q |
417 |
taacagtcctaatagcaacaacacaggttct |
447 |
Q |
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| T |
49766396 |
taacagtcctaatagcaacaacacaggttct |
49766366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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