View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5166_low_47 (Length: 203)
Name: NF5166_low_47
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5166_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 6592232 - 6592415
Alignment:
| Q |
1 |
caatcgttcaagcagaaggcagctggatattaagttttcaacagcatctttagtcaatgtaacatattgcagatcaagactcttcaagttcttgaaacct |
100 |
Q |
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| T |
6592232 |
caatcgttcaagcataaggcagctggatattaagttttcaacagcatctttagtcaatgtaacatattgcagatcaagactcttcaagttcttgaaacct |
6592331 |
T |
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| Q |
101 |
tgaaatgttgatggtggtataagccagcattctaataattctaaatgatgcaaactttgacaagaaaataaccatgaaggtatt |
184 |
Q |
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| T |
6592332 |
tgaaatgttgatggtggtataagccagcattctaataattctaaatgatgcaaactttgacaagaaaataaccatgaaggtatt |
6592415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 6601487 - 6601670
Alignment:
| Q |
1 |
caatcgttcaagcagaaggcagctggatattaagttttcaacagcatctttagtcaatgtaacatattgcagatcaagactcttcaagttcttgaaacct |
100 |
Q |
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| T |
6601487 |
caatcgttcaagcaaagggcaagtagatatcaagttttcaaaagcatcttgagacaaggtaacatgttgcagatcaagactcttcaagttcctgaatcct |
6601586 |
T |
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| Q |
101 |
tgaaatgttgatggtggtataagccagcattctaataattctaaatgatgcaaactttgacaagaaaataaccatgaaggtatt |
184 |
Q |
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| T |
6601587 |
tgaaatgttgatggtggtataagccaacagttaaataattctaaatgatgtaaaccttgacaagaaaataagcatgaaggtatt |
6601670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 171
Target Start/End: Complemental strand, 3361962 - 3361865
Alignment:
| Q |
74 |
tcaagactcttcaagttcttgaaaccttgaaatgttgatggtggtataagccagcattctaataattctaaatgatgcaaactttgacaagaaaataa |
171 |
Q |
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| T |
3361962 |
tcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataa |
3361865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 3218247 - 3218339
Alignment:
| Q |
18 |
ggcagctggatattaagttttcaacagcatctttagtcaatgtaacatattgcagatcaagactcttcaagttcttgaaaccttgaaatgttg |
110 |
Q |
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| T |
3218247 |
ggcagccggatatcaagttttcaaaagcatcttgagccattgtaacctgatatagttcaagacttttcaagttcttgaagcctttaaacgttg |
3218339 |
T |
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