View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5166_low_7 (Length: 405)
Name: NF5166_low_7
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5166_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 391
Target Start/End: Complemental strand, 26569853 - 26569473
Alignment:
| Q |
17 |
aaatagagtttcacttcttaacatcttcaaccactaacaatagtgtctatatcatttttgcacactcagttttcccccatgagt---gttacataactgt |
113 |
Q |
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| T |
26569853 |
aaatagagtttcacttcttaacattttcaaccactaaccgtagtgtctatatcatttttgcacactcaattttcgctcacgagtactgttacataactgt |
26569754 |
T |
|
| Q |
114 |
acatgaatgtaattatat--cttctttttaacagtgaatattattatatagggatcaaatcctt-ttacttcaacatctatctatctttctcagttccct |
210 |
Q |
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|||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
26569753 |
acatgaatgtaattatatatcttctttttaatagtgaatattattatacagggatcaaatccttattagttcaacatctatctatctttctcagttccct |
26569654 |
T |
|
| Q |
211 |
tcaaaattttatttttctttcaaatactctccattaaaatataatacttatacagcaacctgtaaatgttagagattactattactatacattatggcca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26569653 |
tcaaaattttatttttctttcaaatactctccattaaaatataatacttatacagcaacctgtaaatgttagagattactattactatacatcatggcca |
26569554 |
T |
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| Q |
311 |
tgttctcaagttgaatgcatatcctagttgtcaatcaccaaaccaccattaggttcatgattaaataaaaagtcttccaca |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26569553 |
tgttctcaagttgaatgcatatcctagttgtcaatcaccaaaccaccattaggttcatgattaaataaaaagtcttccaca |
26569473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 26567121 - 26566920
Alignment:
| Q |
17 |
aaatagagtttcacttcttaacatcttcaaccactaacaatagtgtctatatcatttttgcacactcagttttcccccatgagtgttacataactgtaca |
116 |
Q |
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||||||||||||||||||||||||||| ||||||||| | ||||||||||| ||||||| |||||| |||| | ||| |||||||||||||||||||| |
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| T |
26567121 |
aaatagagtttcacttcttaacatctttaaccactaatcagagtgtctatatgatttttgtgcactcaatttttcaccacgagtgttacataactgtaca |
26567022 |
T |
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| Q |
117 |
tgaatgtaattatatcttctttttaacagtgaa---tattattatatagggatcaaatcctt-ttacttcaacatctatctatctttctcagttcccttc |
212 |
Q |
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||||||| | ||| ||||||| || |||||| ||||||||| || ||||||| |||| ||||||| ||| |||||| | || ||||||||||||| |
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| T |
26567021 |
tgaatgttaatatgtcttcttagta--agtgaatactattattatctaaagatcaaaaccttattacttccacacctatctctgttgctcagttcccttc |
26566924 |
T |
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| Q |
213 |
aaaa |
216 |
Q |
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|||| |
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| T |
26566923 |
aaaa |
26566920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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