View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5166_low_9 (Length: 395)
Name: NF5166_low_9
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5166_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 70 - 377
Target Start/End: Original strand, 28922773 - 28923080
Alignment:
| Q |
70 |
gtcacaagtctctccaatgtctaattctggcaaatctttttgctctagcatatcttttcttgaggaatcttctggtgacagattggtaccgaccagttcc |
169 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
28922773 |
gtcacaagtctctccaatgtctaattctggcaaatcttttttctctagcatatcttttcttgaagaatcttctggcgacagattggtaccgaccagttcc |
28922872 |
T |
|
| Q |
170 |
ggaattacttttggaatttcacttaataaacgtgattgttcggctgcagactcaagcttctgtttttggtccatgtactgagcaagtgtatggaaaaatg |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28922873 |
ggaattacttttggaatttcacttaataaacgtgattgttcggctgcagactcaagcttctgtttttggtccatgtactgagcaagtgtatgaaaaaatg |
28922972 |
T |
|
| Q |
270 |
gttaaggcacaaattgtctgcattaaattaggtaacaaaatacaattcacaacattttggcatttagcttctaatatgtcataacattaataaatatatc |
369 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28922973 |
gttaaggcacaaattgtcagcattaaattaggtaacaaaatacaattcacaacattttggcatttagcttctaatatgtcataacattactaaatatatc |
28923072 |
T |
|
| Q |
370 |
atgaaagg |
377 |
Q |
| |
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|||||||| |
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|
| T |
28923073 |
atgaaagg |
28923080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 377
Target Start/End: Original strand, 28898931 - 28899313
Alignment:
| Q |
11 |
cacagacctacaacatctgctctcttatccggacattgggtaaaaccatcatgtgtggagtc---------------acaagtctctccaatgtctaatt |
95 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||| || ||| |
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| T |
28898931 |
cacagacctacaacatctgctctcttatccagacattgggaaaaaccatcatgtgtggagtattgtgcaaaagagttacaagtctctccaatggctgatt |
28899030 |
T |
|
| Q |
96 |
ctggcaaatctttttgctctagcatatcttttcttgaggaatcttctggtgacagattggtaccgaccagttccggaattacttttggaatttcacttaa |
195 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| | |||| ||| |||||||||||||||||||||||||| |
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| T |
28899031 |
ctggcaaatctttttgctctagcttatcttttcttgaggaatcttccggtgacagattggtatcaaccatttcaggaattacttttggaatttcacttaa |
28899130 |
T |
|
| Q |
196 |
taaacgtgattgttcggctgcagactcaagcttctgtttttggtccatgtactgagcaagtgtatggaaaaatggttaaggcacaaattgtctgcattaa |
295 |
Q |
| |
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|||||| ||||||| | || |||| |||||||||||||| ||||||||||||| |||| ||||||||| ||||||||||||||||||||| || |||| |
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| T |
28899131 |
taaacgcaattgttcagatggagacccaagcttctgttttcggtccatgtactggccaagcgtatggaaatatggttaaggcacaaattgtcagcgttaa |
28899230 |
T |
|
| Q |
296 |
attaggtaacaaaat-acaattcacaacattttggcatttagcttctaatatgtcataacattaataaatatatcatgaaagg |
377 |
Q |
| |
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|||||| |||| | | |||||||| || |||||||| |||||||||||||||| ||||||||| ||| ||||||||||||| |
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| T |
28899231 |
attaggaaacagattaacaattcataatattttggcctttagcttctaatatgaggtaacattaacaaacatatcatgaaagg |
28899313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 68 - 345
Target Start/End: Original strand, 28913349 - 28913627
Alignment:
| Q |
68 |
gagtcacaagtctctccaatgtctaattctggcaaatctttttgctctagcatatcttttcttgaggaatcttctggtgacagattggtaccgaccagtt |
167 |
Q |
| |
|
|||| |||||||||||||||| ||| || ||||||| ||||| || | | |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28913349 |
gagttacaagtctctccaatggctacaacttgcaaatcattttgttcaaacttatcttttcttgaggaatcttctggtgacagattggtaccaaccagtt |
28913448 |
T |
|
| Q |
168 |
ccggaattacttttggaatttcacttaataaacgtgattgttcggctgcagactcaagcttctgtttttggtccatgtactgagcaagtgtatggaaaaa |
267 |
Q |
| |
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| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28913449 |
caggaattactttcggaatttcacttaataaacgtgattgttcggatgcagactcaagcttctgtttttggtccatgtactgagcaagtgtatggaaaaa |
28913548 |
T |
|
| Q |
268 |
tggttaaggcacaaattgtctgcattaaattaggtaacaaaata-caattcacaacattttggcatttagcttctaata |
345 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||| || |||||||||||||||| |||||||||| ||||| |
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| T |
28913549 |
tggttaaggcacaaattgttggcattaaattagggaacaaattaccaattcacaacatttttccatttagcttttaata |
28913627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 12 - 347
Target Start/End: Original strand, 28888966 - 28889318
Alignment:
| Q |
12 |
acagacctacaacatctgctctcttatccggacattgggtaaaaccatcatgtgtggagtc---------------acaagtctctccaatgtctaattc |
96 |
Q |
| |
|
||||||||| |||||||| |||||||||| ||||||| | |||||||||||||||||||| ||||||||| |||||| ||||||| |
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| T |
28888966 |
acagacctaaaacatctgttctcttatccagacattgagcaaaaccatcatgtgtggagtactgtccaacagagttacaagtctcaccaatggctaattc |
28889065 |
T |
|
| Q |
97 |
tggcaaatctttttgctctagcatatcttttcttgaggaatcttctggtgacagattggtaccgaccagttccggaattacttttggaatttcacttaat |
196 |
Q |
| |
|
||| ||||| || ||||| ||| ||||| || ||||||||| ||||||||||||| ||||| | | || ||| ||||||||||||||||||||| ||||| |
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| T |
28889066 |
tggtaaatcattgtgctcaagcttatctctttttgaggaattttctggtgacagactggtatcaatcatttcaggaattacttttggaatttcatttaat |
28889165 |
T |
|
| Q |
197 |
aaacgtgattgttcggctgcagactcaagcttctgtttttggtccatgtactgagcaagtgtatggaaaaatggttaaggcacaaattgtctgcattaaa |
296 |
Q |
| |
|
||| |||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
28889166 |
aaatgtgattgttctgacggagactcaagcttctgtttttggtccatgtactgagcaagtgtatggaaatatggttaaggcacaaattgttggcattaaa |
28889265 |
T |
|
| Q |
297 |
tta-ggtaacaaaata-caattcacaacattttggcatttagcttctaatatg |
347 |
Q |
| |
|
||| || |||||| || |||||||||||||||| | |||||||| ||||||| |
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|
| T |
28889266 |
ttagggaaacaaattaccaattcacaacatttttccctttagcttttaatatg |
28889318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 68 - 377
Target Start/End: Original strand, 28931652 - 28931969
Alignment:
| Q |
68 |
gagtcacaagtctctccaatgtctaattctggcaaatctttttgctctagcatatcttttcttgaggaatcttctggtgacagattggtaccgaccagtt |
167 |
Q |
| |
|
|||| ||||||||||||||| |||| ||||||||||| ||||||| | | |||||||||||||||| | |||||| || ||||||||| | |||| || |
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|
| T |
28931652 |
gagttacaagtctctccaataactaaatctggcaaatcaatttgctcaaccttatcttttcttgaggatttttctggggaaagattggtatcaaccattt |
28931751 |
T |
|
| Q |
168 |
ccggaattacttttggaatttcacttaataaacgtgattgttcggctgcagactcaagcttctgtttttggtccatgtactgagcaagtgtatggaaaaa |
267 |
Q |
| |
|
| |||||||||| ||| ||||||| |||||||||||||||||| | || |||||| |||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
28931752 |
caggaattacttctgggatttcacctaataaacgtgattgttctgatggagactcgagcttctgttttcggtccatgtactgagcaagtgtatggaaata |
28931851 |
T |
|
| Q |
268 |
tggttaaggcacaaattgtctgcattaaattaggtaacaaaata--------caattcacaacattttggcatttagcttctaatatg-tcataacatta |
358 |
Q |
| |
|
|||||||||| |||||||| |||||||||| || |||||| || |||||||||||||||||| |||||||||||||||| || ||||||| |
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| T |
28931852 |
tggttaaggcgcaaattgttagcattaaatttgg-aacaaattaataaatgctaattcacaacattttggcctttagcttctaatatgaacacaacatta |
28931950 |
T |
|
| Q |
359 |
ataaatatatcatgaaagg |
377 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
28931951 |
ataaaaatatcatgaaagg |
28931969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 28922678 - 28922749
Alignment:
| Q |
11 |
cacagacctacaacatctgctctcttatccggacattgggtaaaaccatcatgtgtggagtcacaagtctct |
82 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28922678 |
cacagacctacaacatctgctctcttatccggacattgggtaaaaccatcatgtgtggagtcacaagtctct |
28922749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 28913278 - 28913337
Alignment:
| Q |
12 |
acagacctacaacatctgctctcttatccggacattgggtaaaaccatcatgtgtggagt |
71 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||| | | |||||||| ||||||||||| |
|
|
| T |
28913278 |
acagacctacaacatctgttctcttatccagacatagagcaaaaccattatgtgtggagt |
28913337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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