View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5167-Insertion-2 (Length: 910)

Name: NF5167-Insertion-2
Description: NF5167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5167-Insertion-2
NF5167-Insertion-2
[»] chr4 (37 HSPs)
chr4 (7-707)||(24229300-24230020)
chr4 (296-446)||(7852506-7852656)
chr4 (328-445)||(8297866-8297983)
chr4 (289-430)||(50341822-50341963)
chr4 (298-471)||(7444349-7444525)
chr4 (328-444)||(35777693-35777809)
chr4 (326-465)||(24175391-24175531)
chr4 (326-426)||(41462063-41462163)
chr4 (299-429)||(37138127-37138257)
chr4 (300-446)||(51834908-51835054)
chr4 (289-472)||(20394604-20394787)
chr4 (301-465)||(34391674-34391838)
chr4 (327-428)||(47995730-47995831)
chr4 (318-472)||(49400579-49400734)
chr4 (326-429)||(50427000-50427103)
chr4 (299-406)||(36702818-36702921)
chr4 (326-406)||(8261142-8261222)
chr4 (326-406)||(8274559-8274639)
chr4 (326-445)||(45900141-45900260)
chr4 (349-445)||(49084415-49084512)
chr4 (298-428)||(31174615-31174745)
chr4 (326-428)||(37440838-37440940)
chr4 (330-419)||(31429298-31429387)
chr4 (330-446)||(25115260-25115375)
chr4 (298-372)||(23605631-23605705)
chr4 (339-429)||(27953046-27953135)
chr4 (323-399)||(42222996-42223072)
chr4 (330-399)||(37060589-37060659)
chr4 (331-445)||(53014203-53014317)
chr4 (361-465)||(51736328-51736433)
chr4 (326-430)||(31690393-31690496)
chr4 (326-399)||(48337597-48337671)
chr4 (326-392)||(13585253-13585319)
chr4 (709-747)||(24230034-24230071)
chr4 (349-399)||(39195742-39195792)
chr4 (327-392)||(14948981-14949045)
chr4 (330-391)||(41370165-41370225)
[»] chr5 (25 HSPs)
chr5 (298-471)||(18229566-18229740)
chr5 (326-472)||(34899128-34899274)
chr5 (327-431)||(9276573-9276677)
chr5 (321-424)||(112473-112576)
chr5 (330-429)||(16667288-16667387)
chr5 (298-428)||(17692274-17692403)
chr5 (331-445)||(30501137-30501251)
chr5 (331-445)||(30541480-30541594)
chr5 (328-428)||(8221134-8221234)
chr5 (326-445)||(30104799-30104918)
chr5 (326-384)||(7968446-7968504)
chr5 (319-428)||(3140826-3140935)
chr5 (326-430)||(15720077-15720181)
chr5 (328-428)||(23117221-23117320)
chr5 (298-470)||(13479987-13480162)
chr5 (352-427)||(18963825-18963900)
chr5 (331-446)||(39558764-39558879)
chr5 (344-446)||(40530445-40530547)
chr5 (330-419)||(7719225-7719314)
chr5 (326-429)||(2918588-2918692)
chr5 (330-406)||(14043415-14043491)
chr5 (301-428)||(5815038-5815165)
chr5 (301-428)||(41047998-41048125)
chr5 (301-419)||(8208200-8208318)
chr5 (326-391)||(42877293-42877357)
[»] chr8 (29 HSPs)
chr8 (297-445)||(42636329-42636477)
chr8 (298-470)||(27801190-27801364)
chr8 (326-472)||(884382-884530)
chr8 (326-472)||(28207590-28207739)
chr8 (319-445)||(2258076-2258202)
chr8 (326-427)||(1135174-1135275)
chr8 (299-428)||(1369824-1369953)
chr8 (320-446)||(4384122-4384247)
chr8 (294-429)||(12954739-12954874)
chr8 (326-431)||(3146045-3146154)
chr8 (326-430)||(33013055-33013159)
chr8 (321-444)||(36355944-36356062)
chr8 (298-431)||(37427197-37427332)
chr8 (349-465)||(167859-167975)
chr8 (330-426)||(35901945-35902041)
chr8 (330-428)||(12829867-12829965)
chr8 (330-427)||(24695760-24695856)
chr8 (326-383)||(26750607-26750664)
chr8 (339-445)||(37813410-37813514)
chr8 (294-391)||(45197426-45197523)
chr8 (366-448)||(9024480-9024562)
chr8 (326-428)||(33949542-33949644)
chr8 (296-385)||(41429566-41429655)
chr8 (319-391)||(41105984-41106055)
chr8 (349-420)||(3520823-3520894)
chr8 (357-423)||(5588977-5589043)
chr8 (330-448)||(12684490-12684608)
chr8 (295-372)||(16459311-16459386)
chr8 (330-391)||(33285922-33285982)
[»] chr7 (27 HSPs)
chr7 (299-419)||(28663104-28663224)
chr7 (298-445)||(28770472-28770619)
chr7 (296-445)||(35496535-35496684)
chr7 (302-445)||(27123269-27123412)
chr7 (298-445)||(44537336-44537483)
chr7 (301-428)||(7653588-7653715)
chr7 (326-430)||(39320974-39321078)
chr7 (326-426)||(43234804-43234904)
chr7 (328-418)||(43224081-43224171)
chr7 (295-430)||(3692887-3693023)
chr7 (326-428)||(25886182-25886284)
chr7 (330-428)||(32051330-32051426)
chr7 (336-423)||(42936024-42936109)
chr7 (298-384)||(26239505-26239591)
chr7 (326-427)||(21727398-21727499)
chr7 (326-430)||(35731297-35731401)
chr7 (361-447)||(44592859-44592945)
chr7 (301-427)||(35923474-35923596)
chr7 (336-428)||(37158358-37158450)
chr7 (299-430)||(2347427-2347557)
chr7 (326-389)||(40753939-40754002)
chr7 (328-387)||(48488172-48488231)
chr7 (326-392)||(14651382-14651448)
chr7 (358-429)||(18801051-18801122)
chr7 (326-392)||(9718986-9719052)
chr7 (330-392)||(23015650-23015712)
chr7 (326-391)||(31902742-31902806)
[»] chr1 (30 HSPs)
chr1 (326-472)||(2864109-2864256)
chr1 (326-445)||(39150577-39150696)
chr1 (298-426)||(44329610-44329738)
chr1 (301-446)||(47187789-47187933)
chr1 (299-419)||(4851210-4851329)
chr1 (326-430)||(38748713-38748817)
chr1 (326-469)||(43397007-43397154)
chr1 (332-444)||(48022351-48022463)
chr1 (326-465)||(7212748-7212882)
chr1 (340-460)||(8365481-8365603)
chr1 (352-431)||(38491230-38491309)
chr1 (330-428)||(32562350-32562447)
chr1 (299-428)||(34409746-34409874)
chr1 (326-408)||(31889194-31889277)
chr1 (361-472)||(39156227-39156340)
chr1 (326-420)||(44329484-44329578)
chr1 (298-431)||(44829281-44829413)
chr1 (297-431)||(45640556-45640689)
chr1 (328-429)||(30822770-30822871)
chr1 (330-446)||(2994968-2995083)
chr1 (328-399)||(36563745-36563814)
chr1 (326-391)||(14758608-14758672)
chr1 (328-429)||(18432947-18433048)
chr1 (366-427)||(34232739-34232800)
chr1 (326-446)||(3982259-3982378)
chr1 (352-428)||(8794428-8794504)
chr1 (336-428)||(40460725-40460817)
chr1 (519-610)||(48617169-48617261)
chr1 (330-446)||(39914604-39914717)
chr1 (326-446)||(14746192-14746312)
[»] scaffold0036 (1 HSPs)
scaffold0036 (300-426)||(62491-62617)
[»] chr2 (22 HSPs)
chr2 (294-428)||(19890149-19890283)
chr2 (296-445)||(34904750-34904899)
chr2 (328-444)||(31017302-31017418)
chr2 (330-442)||(31452343-31452454)
chr2 (326-445)||(9448946-9449064)
chr2 (330-445)||(20064906-20065020)
chr2 (326-445)||(1334876-1334995)
chr2 (330-431)||(4762358-4762459)
chr2 (348-468)||(14295599-14295719)
chr2 (320-406)||(29239235-29239321)
chr2 (326-446)||(15505538-15505658)
chr2 (328-428)||(37993090-37993190)
chr2 (326-429)||(41933142-41933245)
chr2 (340-446)||(7673188-7673294)
chr2 (326-428)||(19514883-19514985)
chr2 (352-470)||(1298981-1299101)
chr2 (326-428)||(9173698-9173801)
chr2 (353-465)||(11944892-11945006)
chr2 (326-391)||(33962936-33963000)
chr2 (324-429)||(38533859-38533963)
chr2 (297-470)||(8964361-8964533)
chr2 (331-428)||(5524473-5524570)
[»] chr3 (21 HSPs)
chr3 (300-424)||(29083865-29083990)
chr3 (298-428)||(51351289-51351419)
chr3 (289-429)||(12086718-12086858)
chr3 (298-446)||(48180135-48180283)
chr3 (349-445)||(49362369-49362465)
chr3 (294-406)||(47638929-47639039)
chr3 (298-430)||(39551820-39551951)
chr3 (357-420)||(26143090-26143153)
chr3 (349-445)||(42846020-42846117)
chr3 (349-416)||(42939856-42939923)
chr3 (326-406)||(26900015-26900095)
chr3 (297-445)||(45529083-45529230)
chr3 (349-428)||(24791509-24791587)
chr3 (331-426)||(35177813-35177908)
chr3 (326-416)||(41309843-41309936)
chr3 (361-446)||(52638185-52638270)
chr3 (300-392)||(48811335-48811426)
chr3 (330-425)||(16662992-16663086)
chr3 (477-610)||(39559965-39560100)
chr3 (357-423)||(22730509-22730575)
chr3 (301-355)||(46093528-46093582)
[»] chr6 (23 HSPs)
chr6 (326-428)||(17215675-17215777)
chr6 (320-406)||(31855088-31855174)
chr6 (298-420)||(32823697-32823819)
chr6 (326-446)||(1479085-1479204)
chr6 (301-424)||(28874415-28874538)
chr6 (301-390)||(30801791-30801880)
chr6 (326-430)||(7421682-7421786)
chr6 (300-428)||(24103745-24103872)
chr6 (326-446)||(27778748-27778867)
chr6 (326-391)||(34231948-34232012)
chr6 (349-428)||(1840995-1841074)
chr6 (334-424)||(5446662-5446752)
chr6 (352-426)||(26669297-26669371)
chr6 (352-445)||(30739594-30739687)
chr6 (353-429)||(1371183-1371259)
chr6 (353-429)||(1378931-1379007)
chr6 (330-446)||(2692427-2692542)
chr6 (326-399)||(2864917-2864991)
chr6 (352-399)||(2884128-2884175)
chr6 (327-446)||(19293446-19293565)
chr6 (368-422)||(34235412-34235466)
chr6 (358-391)||(12132576-12132609)
chr6 (326-425)||(18737777-18737877)
[»] scaffold0419 (1 HSPs)
scaffold0419 (301-424)||(1081-1204)
[»] scaffold0003 (1 HSPs)
scaffold0003 (326-426)||(103641-103741)
[»] scaffold0268 (1 HSPs)
scaffold0268 (326-416)||(20241-20330)
[»] scaffold0119 (1 HSPs)
scaffold0119 (352-426)||(1422-1496)
[»] scaffold0004 (1 HSPs)
scaffold0004 (352-431)||(335866-335945)
[»] scaffold0204 (1 HSPs)
scaffold0204 (326-399)||(25119-25193)
[»] scaffold1444 (1 HSPs)
scaffold1444 (352-428)||(950-1026)


Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 7 - 707
Target Start/End: Original strand, 24229300 - 24230020
Alignment:
Q  7 accttaaacttttagaataactttcatcgccccgatcattttagatgatttcaactttattaggctttgaattgtgaggata------------------ 88  Q
    |||||||| ||||||||||| ||||||||||||| | |||||||||||||| |||||||||| |||||||||||||||||||                      
T  24229300 accttaaatttttagaataattttcatcgccccggttattttagatgatttaaactttattaagctttgaattgtgaggatactatttgattttaagata 24229399  T
Q  89 tgtgttgaatttaacctnnnnnnnttgggggaaaaaatttctaagacataaggcaccgttgaggttgaattttgattgaaaattcatggattaaatttac 188  Q
    || ||||||||||||||       |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  24229400 tgcgttgaatttaacctaaaaaaattggggaaaaaaatttctaaaacataaggcaccgttgaggttgaattttgattgaaaattcaaggattaaatatac 24229499  T
Q  189 gtttgctcttttatcttttgccaaaaatgtattttgtgtcgttcatcttgtttttaacatgttgtagtcctttatcttcnnnnnnnn-ttaatgtttatc 287  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||    
T  24229500 gtttgctcttttatcttttaccaaaaatgcattttgtgtcgttcatcttgtttttaacatgttgtagtcctttatcttttaaaaaaaattaatgtttatc 24229599  T
Q  288 cttatgttatgggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaa 387  Q
    |||||||||||| |||||||||||  | || ||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24229600 cttatgttatggaaaatgttaacgggtgctcccgagacactctttaagcactttaaataaaaagtttttaatgaaaaattgtgtattaaatgcattgaaa 24229699  T
Q  388 attgtgatagtttacttttaagaagaataattactaaatttgggttatttaaagagtgtttgggacactcg--ttaacaaaacccttgttgaaatattag 485  Q
    ||||||||| ||||||||||| ||||||||||||||||||| |||| ||||||||||||  | ||||||||  ||||||| |||||| |||||| |||||    
T  24229700 attgtgataatttacttttaaaaagaataattactaaattttggttgtttaaagagtgtccgagacactcgatttaacaagacccttattgaaacattag 24229799  T
Q  486 agaaagttggaaactaacccagatgactcacaacttgtcaaacgtgttgcggcaatttaatcttcttcaaacgcgttgcaacaaatcattttcttcaaaa 585  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24229800 agaaagttggaaactaacc-aggtgactcacaacttgtcaaacgtgttgcggcaatttaatcttcttcaaacgcgttgcaacaaatcattttcttcaaaa 24229898  T
Q  586 gaatcacatcaaaatctccttcaaaaacatttatgttcttgttttttgttttcaacattccttccgtagtttnnnnnnncgacgtcatttttccttgttc 685  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  24229899 gaatcacatcaaaatctccttcaaaaacatttatgttcttgttttttgttttcaacattccttccgtagtttaaaaaaacgacgtcatttttccttgttc 24229998  T
Q  686 tatgtcacatgggtttatgtta 707  Q
    ||||||||||||||||||||||    
T  24229999 tatgtcacatgggtttatgtta 24230020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 296 - 446
Target Start/End: Original strand, 7852506 - 7852656
Alignment:
Q  296 atgggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgat 395  Q
    ||||||||| ||||||| | |  |||||  |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||    
T  7852506 atgggaaatattaacgagtgccaccggggcactctttaagcactttaaatagtaagtttttaatgaaaagttgtgtattaaatgcattgaaaattgtaat 7852605  T
Q  396 agtttacttttaagaagaataattactaaatttgggttatttaaagagtgt 446  Q
    |||| | |||| | ||||||||||||||||||| || |  |||||||||||    
T  7852606 agttaattttttaaaagaataattactaaatttaggatgcttaaagagtgt 7852656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 328 - 445
Target Start/End: Complemental strand, 8297983 - 8297866
Alignment:
Q  328 tctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatt 427  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||| | |||| || ||| | ||||||||||||||||||    
T  8297983 tctttaagcactttaaatagtaagtttttaatgaaaaattgtgtattgaatgcattggaaattgtaacagttgacattttaaaagaataattactaaatt 8297884  T
Q  428 tgggttatttaaagagtg 445  Q
    |||| |  ||||||||||    
T  8297883 tgggatgcttaaagagtg 8297866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 289 - 430
Target Start/End: Original strand, 50341822 - 50341963
Alignment:
Q  289 ttatgttatgggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaa 388  Q
    |||| ||||||||||||||||| | |  || |||| |||||||||||||||||| |||| || |||| |||||||| ||||||||| ||||| ||| |||    
T  50341822 ttattttatgggaaatgttaacaagtgttttcggggtactctttaagcactttatatagtaaattttaaatgaaaagttgtgtattgaatgcgttggaaa 50341921  T
Q  389 ttgtgatagtttacttttaagaagaataattactaaatttgg 430  Q
    |||| |||||| |||||| | |||||||||||||||||||||    
T  50341922 ttgtaatagttgactttttaaaagaataattactaaatttgg 50341963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 298 - 471
Target Start/End: Original strand, 7444349 - 7444525
Alignment:
Q  298 gggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatag 397  Q
    ||||||||||||||| | || ||| || ||||||||| |||||||||||  |||||||||| ||||| ||||||||| ||||||||||||||||| ||||    
T  7444349 gggaaatgttaacgagtgctcccgagacactctttaaacactttaaatactaagtttttaaagaaaagttgtgtattgaatgcattgaaaattgtaatag 7444448  T
Q  398 tttac-ttttaagaagaataattactaaatttgggttatttaaagagtgt-ttggga-cactcgttaacaaaaccct 471  Q
    || || |||| | ||| |||||||||||||||||| |  ||||| ||||| | |||| ||||||||||||| |||||    
T  7444449 ttgacttttttaaaagtataattactaaatttgggatgcttaaaaagtgtatcgggagcactcgttaacaagaccct 7444525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 328 - 444
Target Start/End: Original strand, 35777693 - 35777809
Alignment:
Q  328 tctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatt 427  Q
    |||||||||||||||||| | |||||||||||||||| ||||||||| ||||||||  ||||||| |||||| |||||| | ||||||||||||||||||    
T  35777693 tctttaagcactttaaatggtaagtttttaatgaaaagttgtgtattgaatgcattagaaattgtaatagttaactttttaaaagaataattactaaatt 35777792  T
Q  428 tgggttatttaaagagt 444  Q
    |||| |  |||||||||    
T  35777793 tgggatggttaaagagt 35777809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 326 - 465
Target Start/End: Original strand, 24175391 - 24175531
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaa 425  Q
    |||||||||||||||||||| | |||||||  | ||||| |||||||||||||||||| |||||||| ||||||||||||||| ||||||| ||||||||    
T  24175391 actctttaagcactttaaatggtaagttttgtacgaaaagttgtgtattaaatgcatttaaaattgtaatagtttacttttaa-aagaatatttactaaa 24175489  T
Q  426 tttgggttatttaaagagtgt--ttgggacactcgttaacaa 465  Q
    ||| || |  |||||||||||  |  ||||||||||||||||    
T  24175490 tttaggatgcttaaagagtgtcctaaggacactcgttaacaa 24175531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 326 - 426
Target Start/End: Complemental strand, 41462163 - 41462063
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaa 425  Q
    |||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||   ||||||| |||||| |||||| | ||||||||||||||||    
T  41462163 actctttaagcattttaaatagtaagtttttaatgaaaaattatgtattaaatgcataagaaattgtaatagttgactttttaaaagaataattactaaa 41462064  T
Q  426 t 426  Q
    |    
T  41462063 t 41462063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 299 - 429
Target Start/End: Original strand, 37138127 - 37138257
Alignment:
Q  299 ggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagt 398  Q
    |||||||||||||| | ||||||||| |||||||||||| ||||| ||||||||| || ||||||| ||||||||| | ||||||| ||||| | |||||    
T  37138127 ggaaatgttaacgagtgcttccgggacactctttaagcaatttaattagaaagttctttatgaaaagttgtgtattgagtgcattggaaattataatagt 37138226  T
Q  399 ttacttttaagaagaataattactaaatttg 429  Q
    | |||||| | ||||||| || |||||||||    
T  37138227 tgactttttaaaagaatagttgctaaatttg 37138257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 300 - 446
Target Start/End: Complemental strand, 51835054 - 51834908
Alignment:
Q  300 gaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtt 399  Q
    ||||||||||||| |  | ||| || ||||||||| |||||||||||| || ||||||||||||| ||||||||| ||||||||| ||||| | ||||||    
T  51835054 gaaatgttaacgagtgttcccgagacactctttaaacactttaaatagtaaatttttaatgaaaagttgtgtatttaatgcattggaaattataatagtt 51834955  T
Q  400 tacttttaagaagaataattactaaatttgggttatttaaagagtgt 446  Q
     |||||| | |||||||||| |||||||| || |  |||||||||||    
T  51834954 gactttttaaaagaataattgctaaatttaggatgcttaaagagtgt 51834908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 289 - 472
Target Start/End: Complemental strand, 20394787 - 20394604
Alignment:
Q  289 ttatgttatgggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaa 388  Q
    |||| |||||| |||||||||||||||  |  | | |||||||||| || ||||||| ||| ||||||||||||||  | |||||| |||| |||| |||    
T  20394787 ttattttatggaaaatgttaacgaatatctttgtggtactctttaaacattttaaatggaa-gtttttaatgaaaatgt-tgtattgaatgtattggaaa 20394690  T
Q  389 ttgtgatagtttacttttaagaagaataattactaaatttgggttatttaaagagtg-tttgg-gacactcgttaacaaaaccctt 472  Q
    |||| |||||| |||||| | |||||||||||||||||||||| |  |||||||||| | ||| ||||||||||||||||||||||    
T  20394689 ttgtaatagttcactttttaaaagaataattactaaatttgggatgcttaaagagtgctctggagacactcgttaacaaaaccctt 20394604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 301 - 465
Target Start/End: Original strand, 34391674 - 34391838
Alignment:
Q  301 aaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagttt 400  Q
    |||||||||||| ||||| || | |||||||||| ||||| |||||| ||||||||||| |||| ||||||||| | ||||||| ||||||| |||  |     
T  34391674 aaatgttaacgagtactttcgaggtactctttaaacacttaaaatagtaagtttttaataaaaagttgtgtattgattgcattggaaattgtaataactg 34391773  T
Q  401 acttttaagaagaataattactaaatttgggttatttaaagagtgtttggga-cactcgttaacaa 465  Q
    |||||  | ||||||||||||||||||| || |||||||| ||||||  ||| |||||||||||||    
T  34391774 actttataaaagaataattactaaattttggatatttaaa-agtgttccggagcactcgttaacaa 34391838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 327 - 428
Target Start/End: Original strand, 47995730 - 47995831
Alignment:
Q  327 ctctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaat 426  Q
    ||||||||||||||||||| | |||||||||||||||| || |||||| ||||||||||||||||| ||| || |||||| | |||| ||||||||||||    
T  47995730 ctctttaagcactttaaattgtaagtttttaatgaaaagttatgtattgaatgcattgaaaattgtaataattaactttttaaaagagtaattactaaat 47995829  T
Q  427 tt 428  Q
    ||    
T  47995830 tt 47995831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 318 - 472
Target Start/End: Complemental strand, 49400734 - 49400579
Alignment:
Q  318 tccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataa 417  Q
    |||| ||||||||||||||||||||||||  ||  |||||||||||| | ||||||||||| ||||| ||||||| |||||| | |||| | ||||||||    
T  49400734 tccgagatactctttaagcactttaaataacaaaattttaatgaaaagtcgtgtattaaatacattggaaattgtaatagttgattttttaaaagaataa 49400635  T
Q  418 ttactaaatttgggttatttaaagagtg-tttgggacactcgttaacaaaaccctt 472  Q
    ||||||||||| || |  ||||| |||| | |||  ||||||||||||| ||||||    
T  49400634 ttactaaatttaggatgcttaaatagtgctctggagcactcgttaacaagaccctt 49400579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 326 - 429
Target Start/End: Complemental strand, 50427103 - 50427000
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaa 425  Q
    ||||||||| |||||||||||| || ||||||||||||| |||||| || | ||||||| ||||||| |||||| |||||| | ||||||||||||||||    
T  50427103 actctttaaacactttaaatagtaaatttttaatgaaaagttgtgtgttgattgcattggaaattgtaatagttgacttttcaaaagaataattactaaa 50427004  T
Q  426 tttg 429  Q
    ||||    
T  50427003 tttg 50427000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 299 - 406
Target Start/End: Complemental strand, 36702921 - 36702818
Alignment:
Q  299 ggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagt 398  Q
    |||||||||||||| | | ||||||| ||||||||||||||||||     |||||||||||||||||||||||||| ||||||||||||||||| ||| |    
T  36702921 ggaaatgttaacgagttcctccgggacactctttaagcactttaat----aagtttttaatgaaaaattgtgtattgaatgcattgaaaattgtaataat 36702826  T
Q  399 ttactttt 406  Q
    | ||||||    
T  36702825 tgactttt 36702818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 326 - 406
Target Start/End: Complemental strand, 8261222 - 8261142
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttactttt 406  Q
    |||||| ||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||| | |||| ||||||    
T  8261222 actcttcaagcactttaaatagtaagtttttaatgaaaagttatgtattaaatgcattgaaaattgtaacagttgactttt 8261142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 326 - 406
Target Start/End: Complemental strand, 8274639 - 8274559
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttactttt 406  Q
    |||||| ||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||| | |||| ||||||    
T  8274639 actcttcaagcactttaaatagtaagtttttaatgaaaagttatgtattaaatgcattgaaaattgtaacagttgactttt 8274559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 326 - 445
Target Start/End: Original strand, 45900141 - 45900260
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaa 425  Q
    |||||||||||||||||| ||| ||||||   ||||||| ||||||||| ||||||||| |||||||||||||| |||||  | |||||||||| |||||    
T  45900141 actctttaagcactttaattagtaagtttcatatgaaaagttgtgtattgaatgcattggaaattgtgatagttgactttataaaagaataattgctaaa 45900240  T
Q  426 tttgggttatttaaagagtg 445  Q
    ||| || |  ||||||||||    
T  45900241 tttaggatgcttaaagagtg 45900260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 349 - 445
Target Start/End: Original strand, 49084415 - 49084512
Alignment:
Q  349 aagtttttaatgaaaaattgtgtattaaatg-cattgaaaattgtgatagtttacttttaagaagaataattactaaatttgggttatttaaagagtg 445  Q
    |||||||||||||||| ||||||||| |||  ||||||||||||| |||||| |||||| | ||||||||||||||||||| || || ||||||||||    
T  49084415 aagtttttaatgaaaagttgtgtattgaatttcattgaaaattgtaatagttgactttttaaaagaataattactaaatttaggataattaaagagtg 49084512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 298 - 428
Target Start/End: Original strand, 31174615 - 31174745
Alignment:
Q  298 gggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatag 397  Q
    ||||||||||||||| | |||| |||||| |||||||  |||||||||   || ||||||||||||| ||||||| | |||  |||||||||||| | ||    
T  31174615 gggaaatgttaacgagtgcttctgggatattctttaaatactttaaatgataaatttttaatgaaaagttgtgtaatgaatatattgaaaattgtaacag 31174714  T
Q  398 tttacttttaagaagaataattactaaattt 428  Q
    || |||||| | |||||||||||| ||||||    
T  31174715 ttaactttttaaaagaataattacaaaattt 31174745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 326 - 428
Target Start/End: Complemental strand, 37440940 - 37440838
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaa 425  Q
    |||||||||| ||||||||| | || ||| |||||||||||| |||||| ||  ||||||||||||| |||||| |||||| | || |||||||||||||    
T  37440940 actctttaagtactttaaatggtaaatttataatgaaaaattatgtattgaacacattgaaaattgtaatagttgactttttaaaataataattactaaa 37440841  T
Q  426 ttt 428  Q
    |||    
T  37440840 ttt 37440838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 330 - 419
Target Start/End: Complemental strand, 31429387 - 31429298
Alignment:
Q  330 tttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataatt 419  Q
    |||||||||||||| ||| ||||||| |||||||| ||||||||| ||||||||| ||||||| |||||| | |||| | ||||||||||    
T  31429387 tttaagcactttaattagtaagttttaaatgaaaagttgtgtattgaatgcattggaaattgtaatagttgattttttaaaagaataatt 31429298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 330 - 446
Target Start/End: Original strand, 25115260 - 25115375
Alignment:
Q  330 tttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttg 429  Q
    ||||| |||||||||||| ||||||||| | |||| ||||||||| | ||||||| ||||||| |||||| |||||| | || ||||||||||||||||     
T  25115260 tttaaacactttaaatagtaagttttta-taaaaagttgtgtattcactgcattggaaattgtaatagttaactttttaaaataataattactaaatttt 25115358  T
Q  430 ggttatttaaagagtgt 446  Q
    || |  |||||||||||    
T  25115359 ggattcttaaagagtgt 25115375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 298 - 372
Target Start/End: Original strand, 23605631 - 23605705
Alignment:
Q  298 gggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgta 372  Q
    ||||||||||||||| |   ||||||||||| |||||||||||||||| | |||||||||||||||| |||||||    
T  23605631 gggaaatgttaacgagtgtctccgggatactttttaagcactttaaatggtaagtttttaatgaaaagttgtgta 23605705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 339 - 429
Target Start/End: Original strand, 27953046 - 27953135
Alignment:
Q  339 tttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttg 429  Q
    ||||||| | |||||||||| ||||| ||||||||| ||||||||||||||||| |||||| |||||| | || ||||| |||||||||||    
T  27953046 tttaaatggtaagtttttaacgaaaagttgtgtattgaatgcattgaaaattgtaatagttaactttttaaaataataa-tactaaatttg 27953135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 323 - 399
Target Start/End: Complemental strand, 42223072 - 42222996
Alignment:
Q  323 gatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtt 399  Q
    ||||||||||||| |||| || | | ||||||||||| |||||||||||||| ||||||||||||||| | ||||||    
T  42223072 gatactctttaagtacttaaagtggtaagtttttaataaaaaattgtgtattgaatgcattgaaaattataatagtt 42222996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 330 - 399
Target Start/End: Complemental strand, 37060659 - 37060589
Alignment:
Q  330 tttaagcactttaaatagaaagtttttaatga-aaaattgtgtattaaatgcattgaaaattgtgatagtt 399  Q
    |||||||||||||||| | ||||||||||||| |||||| |||||||| ||||||||||||| | ||||||    
T  37060659 tttaagcactttaaatggtaagtttttaatgaaaaaattatgtattaattgcattgaaaattataatagtt 37060589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 331 - 445
Target Start/End: Original strand, 53014203 - 53014317
Alignment:
Q  331 ttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttgg 430  Q
    ||||||||||||||| | | ||||||||| |||| ||||||||| |||| |||| ||||||| |||||| | |||| | ||  ||||||||||||||| |    
T  53014203 ttaagcactttaaatggtatgtttttaataaaaagttgtgtattgaatgtattggaaattgtaatagttaattttttaaaaagataattactaaatttag 53014302  T
Q  431 gttatttaaagagtg 445  Q
    | | |||||| ||||    
T  53014303 gatgtttaaaaagtg 53014317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 361 - 465
Target Start/End: Complemental strand, 51736433 - 51736328
Alignment:
Q  361 aaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttgggttatttaaagagtgttt-gggacactcgt 459  Q
    |||| ||||||||| |||| |||||||||| | |||||| |||||| | |||||||||| ||||||||||  |  |||||||||||||  || |||||||    
T  51736433 aaaagttgtgtattcaatgtattgaaaattataatagttgactttttaaaagaataattgctaaatttggaatcattaaagagtgtttatgggcactcgt 51736334  T
Q  460 taacaa 465  Q
    ||||||    
T  51736333 taacaa 51736328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 326 - 430
Target Start/End: Complemental strand, 31690496 - 31690393
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaa 425  Q
    |||| |||| |||||||||||| || ||| | ||||||| ||||||||| ||||||||||||||||  | |||| |||||| | || |||||||| ||||    
T  31690496 actccttaaacactttaaatagtaaatttcttatgaaaagttgtgtattcaatgcattgaaaattgcaacagttgacttttta-aataataattaataaa 31690398  T
Q  426 tttgg 430  Q
    |||||    
T  31690397 tttgg 31690393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 326 - 399
Target Start/End: Complemental strand, 48337671 - 48337597
Alignment:
Q  326 actctttaagcactttaaatagaaagttttta-atgaaaaattgtgtattaaatgcattgaaaattgtgatagtt 399  Q
    |||||||||||| ||||||||| ||||||||  || |||||||| ||| | ||||||||||||||||| ||||||    
T  48337671 actctttaagcattttaaatagtaagtttttttataaaaaattgagtaatcaatgcattgaaaattgtaatagtt 48337597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 326 - 392
Target Start/End: Original strand, 13585253 - 13585319
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgt 392  Q
    |||||||||||||||||||| | |||||||  ||||||| || |||| | ||| |||||||||||||    
T  13585253 actctttaagcactttaaatggtaagttttatatgaaaagttatgtaatgaatacattgaaaattgt 13585319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 709 - 747
Target Start/End: Original strand, 24230034 - 24230071
Alignment:
Q  709 tattaaactttcgctaactaatacttatattatgatttc 747  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  24230034 tattaaactttcgctaactaata-ttatattatgatttc 24230071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 349 - 399
Target Start/End: Original strand, 39195742 - 39195792
Alignment:
Q  349 aagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtt 399  Q
    |||||||  ||||||| ||||||||| ||||||||||||||||| ||||||    
T  39195742 aagttttatatgaaaagttgtgtattcaatgcattgaaaattgtaatagtt 39195792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 327 - 392
Target Start/End: Original strand, 14948981 - 14949045
Alignment:
Q  327 ctctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgt 392  Q
    ||||||||||||||| ||||  ||||||||| |||||| ||||||| | |||||||||||| ||||    
T  14948981 ctctttaagcacttttaataacaagttttta-tgaaaatttgtgtaatcaatgcattgaaatttgt 14949045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 330 - 391
Target Start/End: Original strand, 41370165 - 41370225
Alignment:
Q  330 tttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattg 391  Q
    |||||| ||||| ||||| ||||||||| |||||| ||||||| | ||||||||||||||||    
T  41370165 tttaaggactttgaatagtaagttttta-tgaaaatttgtgtaatcaatgcattgaaaattg 41370225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 3e-41; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 298 - 471
Target Start/End: Original strand, 18229566 - 18229740
Alignment:
Q  298 gggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatag 397  Q
    ||||||||||||||| | ||||||||| |||||||||||||||||||| | ||||||||||||||||||||| |||| |||| |||| ||||||| ||||    
T  18229566 gggaaatgttaacgagtgcttccgggacactctttaagcactttaaatggtaagtttttaatgaaaaattgtttattgaatgtattggaaattgtaatag 18229665  T
Q  398 tttacttttaagaagaataattactaaatttgggttatttaaagagt-gtttgggacactcgttaacaaaaccct 471  Q
    || |||||| | |||||||||||||||||||||| |  |||||||||  || ||| ||||||||||||| |||||    
T  18229666 ttaactttttaaaagaataattactaaatttgggatgcttaaagagtacttgggggcactcgttaacaagaccct 18229740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 326 - 472
Target Start/End: Original strand, 34899128 - 34899274
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaa 425  Q
    ||||||||| |||||||||||| ||||||| |||||||| || | |||||||||||||  ||||||| ||| ||  ||||| | |||||||||||||| |    
T  34899128 actctttaaacactttaaatagtaagttttaaatgaaaagttatatattaaatgcattagaaattgtaataattgtctttttaaaagaataattactata 34899227  T
Q  426 tttgggttatttaaagagtgtttgggacactcgttaacaaaaccctt 472  Q
    |||||| |  ||||||||||| || ||||||||||||||||||||||    
T  34899228 tttgggatgcttaaagagtgtctgagacactcgttaacaaaaccctt 34899274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 327 - 431
Target Start/End: Original strand, 9276573 - 9276677
Alignment:
Q  327 ctctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaat 426  Q
    ||||||||||||||||||||| |||||||||||||||| || |||||| ||||||||||||||| | |||||| | |||| | || ||||||||||||||    
T  9276573 ctctttaagcactttaaatagtaagtttttaatgaaaagttatgtattgaatgcattgaaaattataatagttgattttttaaaaaaataattactaaat 9276672  T
Q  427 ttggg 431  Q
    |||||    
T  9276673 ttggg 9276677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 321 - 424
Target Start/End: Original strand, 112473 - 112576
Alignment:
Q  321 gggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataatta 420  Q
    |||| |||||||||||||||||||||  || ||||||||||||||||||||||||||| |||||||||||||   |||| |||||| | |||||||||||    
T  112473 gggacactctttaagcactttaaataacaaatttttaatgaaaaattgtgtattaaatacattgaaaattgtatcagttgacttttcaaaagaataatta 112572  T
Q  421 ctaa 424  Q
    ||||    
T  112573 ctaa 112576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 330 - 429
Target Start/End: Original strand, 16667288 - 16667387
Alignment:
Q  330 tttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttg 429  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||| |||| ||||||| ||| || |||||| | ||||||||||| ||||||||    
T  16667288 tttaagcactttaaatagtaagtttttaatgaaaaattgtgtattgaatgtattggaaattgtaataattgactttttaaaagaataattattaaatttg 16667387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 298 - 428
Target Start/End: Complemental strand, 17692403 - 17692274
Alignment:
Q  298 gggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatag 397  Q
    ||||||||||||||| | |  ||||| |||||||||||||||| |||||| | |||||||||||||| ||||||| ||| ||||||||||||||| | ||    
T  17692403 gggaaatgttaacgagtgcccccggg-tactctttaagcacttaaaatagtaggtttttaatgaaaagttgtgtagtaattgcattgaaaattgtaacag 17692305  T
Q  398 tttacttttaagaagaataattactaaattt 428  Q
    || |||||| |  ||||||||||||||||||    
T  17692304 ttgactttttaagagaataattactaaattt 17692274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 331 - 445
Target Start/End: Original strand, 30501137 - 30501251
Alignment:
Q  331 ttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttgg 430  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||| |||| |||| ||||||| ||| || |||||| | |||||||||||||||||||||    
T  30501137 ttaagcactttaaatagtaagttttaaatgaaaagttgtgtattgaatgtattggaaattgtaataattgactttttaaaagaataattactaaatttgg 30501236  T
Q  431 gttatttaaagagtg 445  Q
    | |  ||||||||||    
T  30501237 gatgcttaaagagtg 30501251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 331 - 445
Target Start/End: Original strand, 30541480 - 30541594
Alignment:
Q  331 ttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttgg 430  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||| |||| |||| ||||||| ||| || |||||| | |||||||||||||||||||||    
T  30541480 ttaagcactttaaatagtaagttttaaatgaaaagttgtgtattgaatgtattggaaattgtaataattgactttttaaaagaataattactaaatttgg 30541579  T
Q  431 gttatttaaagagtg 445  Q
    | |  ||||||||||    
T  30541580 gatgcttaaagagtg 30541594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 328 - 428
Target Start/End: Complemental strand, 8221234 - 8221134
Alignment:
Q  328 tctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatt 427  Q
    |||||||||| ||||||||| ||||||||||| |||||||||||||| |||||||||||| |||| |||||| |||||| |  ||||||||| |||||||    
T  8221234 tctttaagcattttaaatagtaagtttttaataaaaaattgtgtattgaatgcattgaaagttgtaatagttgactttttaagagaataattgctaaatt 8221135  T
Q  428 t 428  Q
    |    
T  8221134 t 8221134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 326 - 445
Target Start/End: Complemental strand, 30104918 - 30104799
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaa 425  Q
    ||||||||| |||||||| | | |||||||||||||||| ||||||||| ||||||||| ||||||| || ||| |||||| | || |||| ||||||||    
T  30104918 actctttaaacactttaagtggtaagtttttaatgaaaagttgtgtattgaatgcattggaaattgtaattgttgactttttaaaaaaatagttactaaa 30104819  T
Q  426 tttgggttatttaaagagtg 445  Q
    |||||| |  ||||||||||    
T  30104818 tttgggatgcttaaagagtg 30104799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 326 - 384
Target Start/End: Complemental strand, 7968504 - 7968446
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattg 384  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  7968504 actctttaagcactttaaatagtaagtttttaatgaaaagttgtgtattaaatgcattg 7968446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 319 - 428
Target Start/End: Complemental strand, 3140935 - 3140826
Alignment:
Q  319 ccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataat 418  Q
    |||||| || |||||| |||||||||||  ||||||| ||| |||| |||| ||||||||| |||||||||||| |||||| |||||| | |||||||||    
T  3140935 ccgggacacactttaaacactttaaataataagttttaaataaaaagttgtatattaaatgaattgaaaattgtaatagttgactttttaaaagaataat 3140836  T
Q  419 tactaaattt 428  Q
    || |||||||    
T  3140835 tattaaattt 3140826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 326 - 430
Target Start/End: Complemental strand, 15720181 - 15720077
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaa 425  Q
    ||||||||| |||||||| ||| ||||| || ||||||| ||||||||||| | ||||| ||||||| |||||| |||||| | ||||||||||  ||||    
T  15720181 actctttaaacactttaattagtaagttctttatgaaaagttgtgtattaagttcattggaaattgtaatagttgactttttaaaagaataattgataaa 15720082  T
Q  426 tttgg 430  Q
    |||||    
T  15720081 tttgg 15720077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 328 - 428
Target Start/End: Original strand, 23117221 - 23117320
Alignment:
Q  328 tctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatt 427  Q
    ||||||| || ||||||||| ||||||||||||||||||| ||||||||||| |||| ||||||| || ||| || ||||| |||||||| | |||||||    
T  23117221 tctttaatcattttaaatagtaagtttttaatgaaaaattatgtattaaatgtattggaaattgtaattgttaac-tttaaaaagaataactgctaaatt 23117319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 298 - 470
Target Start/End: Complemental strand, 13480162 - 13479987
Alignment:
Q  298 gggaaatgttaacgaatacttccgg-gatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgata 396  Q
    ||||||||||||| | |  |||||| || ||||||||| |||||||||||  || |||||||| ||| |||||||||| ||||||||||||||| | |||    
T  13480162 gggaaatgttaacaagtttttccggtgacactctttaaccactttaaataataaatttttaataaaatattgtgtattgaatgcattgaaaattataata 13480063  T
Q  397 gttta-cttttaagaagaataattactaaatttgggttatttaaagagtg-tttgggacactcgttaacaaaaccc 470  Q
    ||| |  ||||   || |||||||||||||||||   |  |||||||||| || ||| ||||||||||||||||||    
T  13480062 gttaattttttttaaaaaataattactaaatttgaaatgcttaaagagtgcttgggggcactcgttaacaaaaccc 13479987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 352 - 427
Target Start/End: Complemental strand, 18963900 - 18963825
Alignment:
Q  352 tttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatt 427  Q
    ||||| || |||||||||||||| ||||||||||||||||| |||||| ||||||   ||||||||||||||||||    
T  18963900 ttttttataaaaaattgtgtatttaatgcattgaaaattgtaatagttaacttttctcaagaataattactaaatt 18963825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 331 - 446
Target Start/End: Original strand, 39558764 - 39558879
Alignment:
Q  331 ttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttgg 430  Q
    ||||||| ||||||||| ||||||||| |||||| | |||||| |||||||||| ||||||| | |||| | |||| | | ||||||||||||||| |||    
T  39558764 ttaagcattttaaatagtaagtttttattgaaaagtcgtgtatcaaatgcattggaaattgtaacagttgaatttttaaatgaataattactaaatatgg 39558863  T
Q  431 gttatttaaagagtgt 446  Q
      || |||||||||||    
T  39558864 aatacttaaagagtgt 39558879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 344 - 446
Target Start/End: Original strand, 40530445 - 40530547
Alignment:
Q  344 atagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttgggttatttaaagag 443  Q
    |||| |||||||||||||| | ||||||||| |||| |||  |||||||||||||| |||||| | || |||||||||||||| || | | |||||||||    
T  40530445 atagtaagtttttaatgaatagttgtgtattgaatgaattagaaattgtgatagttaactttttaaaataataattactaaatatgagatgtttaaagag 40530544  T
Q  444 tgt 446  Q
    |||    
T  40530545 tgt 40530547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 330 - 419
Target Start/End: Complemental strand, 7719314 - 7719225
Alignment:
Q  330 tttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataatt 419  Q
    |||||||||||||||||  |||||||||||||||| ||||||||| |||  |||| ||||||| |||||| | |||| | ||||||||||    
T  7719314 tttaagcactttaaataataagtttttaatgaaaagttgtgtattgaatatattggaaattgtaatagttgattttttaaaagaataatt 7719225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 326 - 429
Target Start/End: Original strand, 2918588 - 2918692
Alignment:
Q  326 actctttaagcactttaaatag-aaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaa 424  Q
    |||||||||||| ||||||| | ||| ||||||||||||| ||||||||||||||||||| ||||| | |||||| || |||   || |||||||| |||    
T  2918588 actctttaagcattttaaattgtaaaatttttaatgaaaagttgtgtattaaatgcattggaaattataatagttgacatttttaaaaaataattattaa 2918687  T
Q  425 atttg 429  Q
    |||||    
T  2918688 atttg 2918692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 330 - 406
Target Start/End: Complemental strand, 14043491 - 14043415
Alignment:
Q  330 tttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttactttt 406  Q
    |||||||| ||||||||  |||||||  || ||||||||||||||||||| | ||||||||||||||||| ||||||    
T  14043491 tttaagcattttaaatattaagttttatataaaaaattgtgtattaaatgtaatgaaaattgtgatagttgactttt 14043415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 301 - 428
Target Start/End: Original strand, 5815038 - 5815165
Alignment:
Q  301 aaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagttt 400  Q
    |||||||||||| | |||  |||  ||||||||||||||| ||  || ||||||||||||||||  ||| | || |||| |||| |||||||| |||||     
T  5815038 aaatgttaacgagtgcttttggggcactctttaagcacttaaagcagtaagtttttaatgaaaagatgtatgttgaatgtattggaaattgtggtagtta 5815137  T
Q  401 acttttaagaagaataattactaaattt 428  Q
    | |||| | | |||||||||||||||||    
T  5815138 aatttttaaatgaataattactaaattt 5815165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 301 - 428
Target Start/End: Complemental strand, 41048125 - 41047998
Alignment:
Q  301 aaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagttt 400  Q
    |||||||||||  | | ||| |||||||||||||| |||| |||| |  |||||||||||||||| |||| ||| ||||||||| ||||| | ||| ||     
T  41048125 aaatgttaacgggtgcctccaggatactctttaagtacttaaaatgggtagtttttaatgaaaaagtgtgcatttaatgcattggaaattataataatta 41048026  T
Q  401 acttttaagaagaataattactaaattt 428  Q
    || ||| | || ||||||| ||||||||    
T  41048025 accttttaaaaaaataattgctaaattt 41047998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 301 - 419
Target Start/End: Complemental strand, 8208318 - 8208200
Alignment:
Q  301 aaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagttt 400  Q
    |||||||||||| | |||||||  |||||||||| ||| ||||||   |||||||  ||||||| || |||| | |||||||| |||||||| ||| ||     
T  8208318 aaatgttaacgagtgcttccggagtactctttaaacacattaaatgataagttttatatgaaaagttatgtaatgaatgcattaaaaattgtaataattg 8208219  T
Q  401 acttttaagaagaataatt 419  Q
    |||||| | ||||||||||    
T  8208218 actttttaaaagaataatt 8208200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 326 - 391
Target Start/End: Complemental strand, 42877357 - 42877293
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattg 391  Q
    |||||||||  ||||||||||| || |||||| || ||||||||||||| ||| ||||||||||||    
T  42877357 actctttaaagactttaaatagtaaattttta-tggaaaattgtgtattcaatacattgaaaattg 42877293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 3e-35; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 297 - 445
Target Start/End: Original strand, 42636329 - 42636477
Alignment:
Q  297 tgggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgata 396  Q
    |||||||||||||||| | || ||||   |||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||| ||||||| |||    
T  42636329 tgggaaatgttaacgagtgctcccggagcactctttaagcactttaaatggtaagtttttaatgaaaagttgtgtattaaatgcattgtaaattgtaata 42636428  T
Q  397 gtttacttttaagaagaataattactaaatttgggttatttaaagagtg 445  Q
    ||| ||||||  ||| ||||||||||||||||||| |  ||||||||||    
T  42636429 gttgacttttttgaataataattactaaatttgggatgcttaaagagtg 42636477  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 298 - 470
Target Start/End: Original strand, 27801190 - 27801364
Alignment:
Q  298 gggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatag 397  Q
    ||||||||||||||| | ||   ||| ||||||||||||||||||||||| ||||||||||| |||| ||||||| | ||||||||||||||||| ||||    
T  27801190 gggaaatgttaacgagtgctcttggggtactctttaagcactttaaatagtaagtttttaataaaaagttgtgtaatgaatgcattgaaaattgtaatag 27801289  T
Q  398 tttacttttaagaagaataattactaaatttgggttatttaaagagtgt--ttgggacactcgttaacaaaaccc 470  Q
    || |||||| | ||||||||||||||||||| |  |  |||||||||||  | ||| ||||||||||||| ||||    
T  27801290 ttgactttttaaaagaataattactaaatttagaatgattaaagagtgtcatgggggcactcgttaacaagaccc 27801364  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 326 - 472
Target Start/End: Complemental strand, 884530 - 884382
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagttta-cttttaagaagaataattactaa 424  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| || |  |||| | |||||||||||||||    
T  884530 actctttaagcactttaaattgaaagtttttaatgaaaaattgtgtattaaat-cattgaaaattgtaataattgatttttttataagaataattactaa 884432  T
Q  425 atttgggttatttaaagagtgtt--tgggacactcgttaacaaaaccctt 472  Q
    ||||  | | |||||||||||||   | ||||||||||||||||| ||||    
T  884431 atttatgatgtttaaagagtgttccagtgacactcgttaacaaaatcctt 884382  T

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Target: chr8; HSP #4
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 326 - 472
Target Start/End: Complemental strand, 28207739 - 28207590
Alignment:
Q  326 actctttaagcac-tttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaa 424  Q
    ||||||||||||| ||||||| |||||||||||||||||| ||||||||| ||||||||| ||||||| |||||| |||||| | |||||| |||  |||    
T  28207739 actctttaagcacctttaaatggaaagtttttaatgaaaagttgtgtattgaatgcattggaaattgtaatagttgactttttaaaagaattattgttaa 28207640  T
Q  425 atttgggttatttaaagagtgttt--gggacactcgttaacaaaaccctt 472  Q
    ||||||| |  ||||||||||| |  ||| ||||||||||||| ||||||    
T  28207639 atttgggatgcttaaagagtgtctcgggggcactcgttaacaagaccctt 28207590  T

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Target: chr8; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 319 - 445
Target Start/End: Original strand, 2258076 - 2258202
Alignment:
Q  319 ccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataat 418  Q
    |||||| | |||||||||||||||||| | ||||||| |||||||| ||||||||||||| |||| |||||||| ||  || |||||| | |||||||||    
T  2258076 ccgggacaatctttaagcactttaaatggtaagttttaaatgaaaagttgtgtattaaatacattaaaaattgtaatgattaactttttaaaagaataat 2258175  T
Q  419 tactaaatttgggttatttaaagagtg 445  Q
    || |||||||||| |  ||||||||||    
T  2258176 tattaaatttgggatgcttaaagagtg 2258202  T

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Target: chr8; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 326 - 427
Target Start/End: Complemental strand, 1135275 - 1135174
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaa 425  Q
    ||||||||| |||||||||| | |||||||||| ||||| |||| |||| ||| ||||||||||||| |||||| |||||| | ||||||||||||||||    
T  1135275 actctttaaacactttaaatggtaagtttttaaggaaaagttgtatattgaatacattgaaaattgtaatagttgactttttaaaagaataattactaaa 1135176  T
Q  426 tt 427  Q
    ||    
T  1135175 tt 1135174  T

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Target: chr8; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 299 - 428
Target Start/End: Original strand, 1369824 - 1369953
Alignment:
Q  299 ggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagt 398  Q
    |||||||||||| | | ||||| ||| |||||||||||||||||| ||  |||||||  ||||||| || | |||| ||||||||| |||||||||||||    
T  1369824 ggaaatgttaacaagtgcttcctggacactctttaagcactttaattaataagttttatatgaaaagttatctattgaatgcattggaaattgtgatagt 1369923  T
Q  399 ttacttttaagaagaataattactaaattt 428  Q
    | |||||| | |||||||||| ||||||||    
T  1369924 tgactttttaaaagaataattgctaaattt 1369953  T

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Target: chr8; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 320 - 446
Target Start/End: Original strand, 4384122 - 4384247
Alignment:
Q  320 cgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataatt 419  Q
    ||||| ||||||||||||||||||||   || ||||||||||||  ||||||||| ||||||||| ||||||| |||||| | |||| | ||||||||||    
T  4384122 cgggacactctttaagcactttaaatgataaatttttaatgaaag-ttgtgtattgaatgcattggaaattgtaatagttgattttttaaaagaataatt 4384220  T
Q  420 actaaatttgggttatttaaagagtgt 446  Q
    ||||||||| || |  |||||||||||    
T  4384221 actaaatttagggtgcttaaagagtgt 4384247  T

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Target: chr8; HSP #9
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 294 - 429
Target Start/End: Complemental strand, 12954874 - 12954739
Alignment:
Q  294 ttatgggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtg 393  Q
    |||||| |||||||||||| |   |||| || |||||||| | |||||||||   || |||||| ||||||||||||||||||||  |||||||||| |     
T  12954874 ttatggaaaatgttaacgagtgtctccgagacactctttatgtactttaaatgataaatttttattgaaaaattgtgtattaaatctattgaaaattata 12954775  T
Q  394 atagtttacttttaagaagaataattactaaatttg 429  Q
    |||||| | |||||| || |||||||||||||||||    
T  12954774 atagttgatttttaaaaaaaataattactaaatttg 12954739  T

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Target: chr8; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 326 - 431
Target Start/End: Complemental strand, 3146154 - 3146045
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtat----taaatgcattgaaaattgtgatagtttacttttaagaagaataattac 421  Q
    |||||||||||||||||||||| |||||||||||||||   |||| ||    | ||||||||| ||||||| |||||| |||||| | ||||||||||||    
T  3146154 actctttaagcactttaaatagtaagtttttaatgaaacggtgtgcattgaatgaatgcattggaaattgtaatagttaactttttaaaagaataattac 3146055  T
Q  422 taaatttggg 431  Q
    ||||| ||||    
T  3146054 taaatatggg 3146045  T

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Target: chr8; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 326 - 430
Target Start/End: Complemental strand, 33013159 - 33013055
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaa 425  Q
    |||||||||||||||||| ||| ||||| || ||||||| ||||||||| | | ||||| ||||||| |||||| |||||| | ||||||||||  ||||    
T  33013159 actctttaagcactttaattagtaagttctttatgaaaagttgtgtattgagtacattggaaattgtaatagttgactttttaaaagaataattgttaaa 33013060  T
Q  426 tttgg 430  Q
    |||||    
T  33013059 tttgg 33013055  T

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Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 321 - 444
Target Start/End: Original strand, 36355944 - 36356062
Alignment:
Q  321 gggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataatta 420  Q
    |||| ||| |||||| ||||||||| | |||||||||||||||| ||||||||||||||||||  ||||||  |||||||    |||| |||||||||||    
T  36355944 gggacactatttaagtactttaaatggtaagtttttaatgaaaagttgtgtattaaatgcattagaaattgcaatagttt----ttaa-aagaataatta 36356038  T
Q  421 ctaaatttgggttatttaaagagt 444  Q
    || |||||||| |  |||||||||    
T  36356039 cttaatttgggattcttaaagagt 36356062  T

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Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 298 - 431
Target Start/End: Complemental strand, 37427332 - 37427197
Alignment:
Q  298 gggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgata- 396  Q
    ||||||||||||||| | | ||||| | |||||||||||||||||||| | ||| |||||||||||| ||| ||||| | | ||||||||||||| |||     
T  37427332 gggaaatgttaacgagtgcctccgg-acactctttaagcactttaaatggtaagattttaatgaaaagttgagtattgattacattgaaaattgtaataa 37427234  T
Q  397 --gtttacttttaagaagaataattactaaatttggg 431  Q
      | ||  |||| | ||||||||||||||||||||||    
T  37427233 ttgatttttttttaaaagaataattactaaatttggg 37427197  T

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Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 349 - 465
Target Start/End: Original strand, 167859 - 167975
Alignment:
Q  349 aagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttgggttatttaaagagtgttt 448  Q
    ||||||| |||||||| || |||| ||||||||||| ||||| | |||||| |||||| | ||||||||||  |||||||| | || |||||||||||      
T  167859 aagttttaaatgaaaagttatgtaataaatgcattggaaattataatagttgactttttaaaagaataatttttaaatttgagatacttaaagagtgtcg 167958  T
Q  449 gggacactcgttaacaa 465  Q
    ||| |||||| ||||||    
T  167959 ggggcactcgctaacaa 167975  T

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Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 330 - 426
Target Start/End: Complemental strand, 35902041 - 35901945
Alignment:
Q  330 tttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaat 426  Q
    |||||||| ||||||||  |||||||||||||||| || |||||| ||||||||| ||||||| ||| || |||||| | || |||||||| |||||    
T  35902041 tttaagcattttaaataataagtttttaatgaaaagttctgtattgaatgcattggaaattgtaataattgactttttaaaaaaataattattaaat 35901945  T

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Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 330 - 428
Target Start/End: Original strand, 12829867 - 12829965
Alignment:
Q  330 tttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaattt 428  Q
    |||||||||||||||| | ||||||||||||||||||| | |||| |||||||||  |||||| ||| |  |||||| | || |||||||| |||||||    
T  12829867 tttaagcactttaaatggtaagtttttaatgaaaaattatatattgaatgcattgttaattgtaataatagactttttaaaataataattattaaattt 12829965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 330 - 427
Target Start/End: Complemental strand, 24695856 - 24695760
Alignment:
Q  330 tttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatt 427  Q
    ||||| |||||||||||| ||||||| ||| |||| ||||||||| | ||||||  ||||||| |||||| |||||| | || |||||||||||||||    
T  24695856 tttaaacactttaaatagtaagtttt-aataaaaagttgtgtattcactgcattagaaattgtaatagttgactttttaaaataataattactaaatt 24695760  T

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Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 326 - 383
Target Start/End: Complemental strand, 26750664 - 26750607
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcatt 383  Q
    |||||||||||||||||||||| ||| ||||||||||||||| || ||| ||||||||    
T  26750664 actctttaagcactttaaatagtaagattttaatgaaaaattatgcattgaatgcatt 26750607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 339 - 445
Target Start/End: Original strand, 37813410 - 37813514
Alignment:
Q  339 tttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttactttta-agaagaataattactaaatttgggttattt 437  Q
    ||||||||| ||||||   ||||||| ||||||||| ||||||||| ||||||| || ||| ||||||  | |||||||||||||||||||||| |  ||    
T  37813410 tttaaatagtaagttt---atgaaaagttgtgtattcaatgcattggaaattgtaatggttgacttttttaaaagaataattactaaatttgggatcctt 37813506  T
Q  438 aaagagtg 445  Q
    ||||||||    
T  37813507 aaagagtg 37813514  T

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Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 294 - 391
Target Start/End: Complemental strand, 45197523 - 45197426
Alignment:
Q  294 ttatgggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattg 391  Q
    ||||||||||||||||||| | | ||| ||| ||||||||| ||| |||||||| || ||||| ||||||| ||| ||| | ||| ||||||||||||    
T  45197523 ttatgggaaatgttaacgagtgcctccaggacactctttaaacacattaaatagtaaattttttatgaaaagttgggtaatcaatccattgaaaattg 45197426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 366 - 448
Target Start/End: Complemental strand, 9024562 - 9024480
Alignment:
Q  366 ttgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttgggttatttaaagagtgttt 448  Q
    ||||||||| |||||||  |||||||| |||||| | ||||   ||||||||||||||||||||| ||  |||||||||||||    
T  9024562 ttgtgtatttaatgcataaaaaattgtaatagttgattttttgaaagaataattactaaatttggttttcttaaagagtgttt 9024480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 326 - 428
Target Start/End: Original strand, 33949542 - 33949644
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaa 425  Q
    ||||||||| |||||||| ||| ||||| || ||||||| ||||||||| | ||||||  ||||||| |||||| | |||| | || |||| ||||||||    
T  33949542 actctttaaacactttaattagtaagttatttatgaaaagttgtgtattgagtgcatttgaaattgtaatagttgaatttttaaaacaatacttactaaa 33949641  T
Q  426 ttt 428  Q
    |||    
T  33949642 ttt 33949644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 296 - 385
Target Start/End: Original strand, 41429566 - 41429655
Alignment:
Q  296 atgggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattga 385  Q
    |||| |||||||||||| | ||||||    |||||||||||| ||||||||  || || || ||||||||||||||||| ||||||||||    
T  41429566 atggaaaatgttaacgagtgcttccgtatcactctttaagcaatttaaatattaatttgtttatgaaaaattgtgtattcaatgcattga 41429655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 319 - 391
Target Start/End: Original strand, 41105984 - 41106055
Alignment:
Q  319 ccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattg 391  Q
    ||||| ||||||||||| || |||||| | |||||||||  ||||||||||| ||| ||||||||||||||||    
T  41105984 ccggggtactctttaaggaccttaaatggtaagtttttac-gaaaaattgtgaattcaatgcattgaaaattg 41106055  T

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Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 349 - 420
Target Start/End: Original strand, 3520823 - 3520894
Alignment:
Q  349 aagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataatta 420  Q
    |||||||||||||||| || |||||| |||||||| |||| ||| |||||| | |||| | |||||||||||    
T  3520823 aagtttttaatgaaaagttatgtattgaatgcattaaaaactgtaatagttgattttttaaaagaataatta 3520894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 357 - 423
Target Start/End: Complemental strand, 5589043 - 5588977
Alignment:
Q  357 aatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattacta 423  Q
    |||||||| || |||| | ||||||||||||||| | |||||| |||||| | ||||||||||||||    
T  5589043 aatgaaaatttttgtaattaatgcattgaaaattataatagttgactttttaaaagaataattacta 5588977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 330 - 448
Target Start/End: Original strand, 12684490 - 12684608
Alignment:
Q  330 tttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttg 429  Q
    |||||||||||||||||  || |||||||| |||| || |||| | ||||||||  ||||||| |||||| | | ||   ||||||||||| ||||||||    
T  12684490 tttaagcactttaaataataaatttttaattaaaagttttgtaatgaatgcattagaaattgtaatagttgattctttgaaagaataattattaaatttg 12684589  T
Q  430 ggttatttaaagagtgttt 448  Q
    |  |  |||||||||||||    
T  12684590 gaatgcttaaagagtgttt 12684608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 295 - 372
Target Start/End: Complemental strand, 16459386 - 16459311
Alignment:
Q  295 tatgggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgta 372  Q
    ||||||||||||||| || | || |||||  ||||||||||||| || ||||| |||||||| |||||||||||||||    
T  16459386 tatgggaaatgttaatgattgctcccgggc-actctttaagcacctttaatagtaagttttt-atgaaaaattgtgta 16459311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 330 - 391
Target Start/End: Original strand, 33285922 - 33285982
Alignment:
Q  330 tttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattg 391  Q
    |||||| ||||||||||| || |||||| |||||||||||||||| ||| ||| ||||||||    
T  33285922 tttaaggactttaaatagtaaattttta-tgaaaaattgtgtatttaatacatcgaaaattg 33285982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 3e-35; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 299 - 419
Target Start/End: Original strand, 28663104 - 28663224
Alignment:
Q  299 ggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagt 398  Q
    |||||||||||||||| | ||||||  |||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||| |||||    
T  28663104 ggaaatgttaacgaatgcctccggggcactctttaagcactttaaatagtaaggttttaatgaaaaattgtgtattgaatgcattgaaaattgtaatagt 28663203  T
Q  399 ttacttttaagaagaataatt 419  Q
    | |||||| | ||||||||||    
T  28663204 tgactttttaaaagaataatt 28663224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 298 - 445
Target Start/End: Complemental strand, 28770619 - 28770472
Alignment:
Q  298 gggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatag 397  Q
    ||||||||||||||| | | ||||| | |||||||||||||| ||||||| |||||||||||||||| ||||||||| ||||||||| ||||||| ||||    
T  28770619 gggaaatgttaacgagtgcctccggaacactctttaagcactctaaatagtaagtttttaatgaaaagttgtgtattgaatgcattggaaattgtaatag 28770520  T
Q  398 tttacttttaagaagaataattactaaatttgggttatttaaagagtg 445  Q
    || |||||| | ||||||||||||||| |||||| |  ||||||||||    
T  28770519 ttgacttttcaaaagaataattactaattttgggatgcttaaagagtg 28770472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 296 - 445
Target Start/End: Original strand, 35496535 - 35496684
Alignment:
Q  296 atgggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgat 395  Q
    ||||||||||||||||| | |  |||||  ||||||||| |||||||||| | |||||||||||||||||||||||| | ||||||||||||||||| ||    
T  35496535 atgggaaatgttaacgagtgcccccggggcactctttaaacactttaaatggtaagtttttaatgaaaaattgtgtaatgaatgcattgaaaattgtaat 35496634  T
Q  396 agtttacttttaagaagaataattactaaatttgggttatttaaagagtg 445  Q
    |||| |||||| | ||  ||| ||||||||||| || |  ||||||||||    
T  35496635 agttgactttttaaaaatatagttactaaattttggatgcttaaagagtg 35496684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 302 - 445
Target Start/End: Complemental strand, 27123412 - 27123269
Alignment:
Q  302 aatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagttta 401  Q
    ||||||||||| | |  |||||  |||||||||||||||||||| | |||||||||| ||||| ||||||| | ||||||||| ||||||| |||||| |    
T  27123412 aatgttaacgagtgcccccggggcactctttaagcactttaaatggtaagtttttaacgaaaagttgtgtacttaatgcattggaaattgtaatagttga 27123313  T
Q  402 cttttaagaagaataattactaaatttgggttatttaaagagtg 445  Q
    ||||| | |||||| ||||||||||||||| |  ||||||||||    
T  27123312 ctttttaaaagaatgattactaaatttgggatgcttaaagagtg 27123269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 298 - 445
Target Start/End: Complemental strand, 44537483 - 44537336
Alignment:
Q  298 gggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatag 397  Q
    ||||||||||||||| | |  |||||  |||||||||||||||||||||| |||||||||||||||| || ||||||| || || || ||||| | ||||    
T  44537483 gggaaatgttaacgagtgcccccggggcactctttaagcactttaaatagtaagtttttaatgaaaagttatgtattatatacaatggaaattataatag 44537384  T
Q  398 tttacttttaagaagaataattactaaatttgggttatttaaagagtg 445  Q
    || |||||| | ||||||||||||||||| |||| |  ||||||||||    
T  44537383 ttgactttttaaaagaataattactaaatatgggatgcttaaagagtg 44537336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 301 - 428
Target Start/End: Complemental strand, 7653715 - 7653588
Alignment:
Q  301 aaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagttt 400  Q
    |||||||||||| | || |||||| ||||||||||||||||||| || |||||||||||||||| ||||||| | |||| |||| ||||| | ||||||     
T  7653715 aaatgttaacgagttctcccgggacactctttaagcactttaaaaagtaagtttttaatgaaaagttgtgtaatgaatgaattggaaattataatagttg 7653616  T
Q  401 acttttaagaagaataattactaaattt 428  Q
    |||||| | ||||||| || ||||||||    
T  7653615 actttttaaaagaatagttgctaaattt 7653588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 326 - 430
Target Start/End: Original strand, 39320974 - 39321078
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaa 425  Q
    |||||||||||||||||| ||| |||||||| || |||| ||||||||| ||| ||||||||||||| |||||| |||||| | ||||||||||  ||||    
T  39320974 actctttaagcactttaattagtaagttttttattaaaagttgtgtattgaatacattgaaaattgtaatagttgactttttaaaagaataattgttaaa 39321073  T
Q  426 tttgg 430  Q
    |||||    
T  39321074 tttgg 39321078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 326 - 426
Target Start/End: Complemental strand, 43234904 - 43234804
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaa 425  Q
    |||||||||||||||||||||| || ||||||||||||| || |||||| |||| | || ||||||| |||||||| |||| | ||||||||||||||||    
T  43234904 actctttaagcactttaaatagtaaatttttaatgaaaagttatgtattgaatgtaatggaaattgtaatagtttattttttaaaagaataattactaaa 43234805  T
Q  426 t 426  Q
    |    
T  43234804 t 43234804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 328 - 418
Target Start/End: Original strand, 43224081 - 43224171
Alignment:
Q  328 tctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataat 418  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||| || ||||| ||||||| | |||| |||||| | |||||||||    
T  43224081 tctttaagcactttaaatagcaagtttttaatgaaaagttgtgtattacatacattggaaattgtaacagttgactttttaaaagaataat 43224171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 295 - 430
Target Start/End: Complemental strand, 3693023 - 3692887
Alignment:
Q  295 tatgggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagttttta-atgaaaaattgtgtattaaatgcattgaaaattgtg 393  Q
    |||| ||||||||||||| |  |||||||  |||||||||| | ||||| ||| ||||||||  ||||||||||||||||| | ||||||| |||||||     
T  3693023 tatgagaaatgttaacgagtgtttccggggcactctttaagtattttaattagtaagtttttttatgaaaaattgtgtattgagtgcattggaaattgta 3692924  T
Q  394 atagtttacttttaagaagaataattactaaatttgg 430  Q
    |||||| | |||| | |||||||||| ||||||||||    
T  3692923 atagttgattttttaaaagaataattgctaaatttgg 3692887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 326 - 428
Target Start/End: Complemental strand, 25886284 - 25886182
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttt-taagaagaataattactaa 424  Q
    ||||||||| |||||||||| | |||||||  ||||||| |||||||||||||| |||||||||||| |||||| ||||| |||| ||||||||| ||||    
T  25886284 actctttaaacactttaaatggtaagttttatatgaaaagttgtgtattaaatgtattgaaaattgtaatagttgactttctaag-agaataatttctaa 25886186  T
Q  425 attt 428  Q
    ||||    
T  25886185 attt 25886182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 330 - 428
Target Start/End: Original strand, 32051330 - 32051426
Alignment:
Q  330 tttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaattt 428  Q
    |||||||||||||||||| ||||||||||||||||||  | |||| |||||  |||||||||| |||||| |||||| | || ||||||||||||||||    
T  32051330 tttaagcactttaaatagtaagtttttaatgaaaaat--tatattgaatgctatgaaaattgtcatagttgacttttcaaaaaaataattactaaattt 32051426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 336 - 423
Target Start/End: Complemental strand, 42936109 - 42936024
Alignment:
Q  336 cactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattacta 423  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||| |||||| | |||| | ||||||||||||||    
T  42936109 cactttaaatagcaagtttt-aatgaaaaattgtgtattaaatgcattg-aaattgtaatagttgattttttaaaagaataattacta 42936024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 298 - 384
Target Start/End: Original strand, 26239505 - 26239591
Alignment:
Q  298 gggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattg 384  Q
    ||||||||||||| | | ||||  || |||||||||| |||||||||||| ||||||||||||||||||||| |||| |||||||||    
T  26239505 gggaaatgttaacaagtgcttctagggtactctttaaacactttaaatagtaagtttttaatgaaaaattgtatattcaatgcattg 26239591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 326 - 427
Target Start/End: Original strand, 21727398 - 21727499
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaa 425  Q
    ||||||||||||||| ||||   ||||||||||| || | ||||||||| |||| |||| ||||||| |||||| |||||| | ||||||||||||||||    
T  21727398 actctttaagcacttcaaatgataagtttttaataaatatttgtgtattgaatgtattggaaattgtaatagttgactttttaaaagaataattactaaa 21727497  T
Q  426 tt 427  Q
    ||    
T  21727498 tt 21727499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 326 - 430
Target Start/End: Complemental strand, 35731401 - 35731297
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaa 425  Q
    |||||||||||||||||| ||| ||||| || || |||| ||||||||||| ||||||| ||||||| |||||| |||||| | ||||||| ||  ||||    
T  35731401 actctttaagcactttaattagtaagttctttataaaaagttgtgtattaagtgcattggaaattgtaatagttgactttttaaaagaatagttgttaaa 35731302  T
Q  426 tttgg 430  Q
    |||||    
T  35731301 tttgg 35731297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 361 - 447
Target Start/End: Complemental strand, 44592945 - 44592859
Alignment:
Q  361 aaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttgggttatttaaagagtgtt 447  Q
    |||| ||||||||| ||| ||||||||||||| |||||| |||||| | ||||||||||| ||||||| |  |||||||||||||||    
T  44592945 aaaagttgtgtattgaatacattgaaaattgtaatagttaactttttaaaagaataattattaaattttgaatatttaaagagtgtt 44592859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 301 - 427
Target Start/End: Original strand, 35923474 - 35923596
Alignment:
Q  301 aaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagttt 400  Q
    |||||||||||| |   ||||| | ||||||||| |||||||||||  ||||||||| |||||| |    |||| ||||||||| ||||||| |||||||    
T  35923474 aaatgttaacgagtgtctccggaacactctttaaacactttaaataataagtttttattgaaaagt----tattgaatgcattggaaattgtaatagttt 35923569  T
Q  401 acttttaagaagaataattactaaatt 427  Q
    | |||||| ||||||||| ||||||||    
T  35923570 atttttaaaaagaataatgactaaatt 35923596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 336 - 428
Target Start/End: Original strand, 37158358 - 37158450
Alignment:
Q  336 cactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaattt 428  Q
    |||||||||||  || ||||| || ||||||| |||||| | ||||||||||||||| |||||| |||||| | || ||||||||||||||||    
T  37158358 cactttaaataataaattttttataaaaaattatgtattcactgcattgaaaattgtaatagttgactttttaaaataataattactaaattt 37158450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 299 - 430
Target Start/End: Complemental strand, 2347557 - 2347427
Alignment:
Q  299 ggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagt 398  Q
    ||||||||||| || | |||||||| |||||||||||||| || ||||| || ||||| || |||| || |||| | |||||||||||| |||| ||| |    
T  2347557 ggaaatgttaaagagtgcttccggggtactctttaagcacctttaatagtaaattttt-attaaaatttatgtaatcaatgcattgaaatttgtaatatt 2347459  T
Q  399 ttacttttaagaagaataattactaaatttgg 430  Q
    | | ||||  || ||||| |||||||||||||    
T  2347458 tgatttttttgaggaatatttactaaatttgg 2347427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 326 - 389
Target Start/End: Original strand, 40753939 - 40754002
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaat 389  Q
    ||||||||| || |||||||   |||||||||||||||| |||||||||||||| |||||||||    
T  40753939 actctttaaacattttaaatgataagtttttaatgaaaagttgtgtattaaatgtattgaaaat 40754002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 328 - 387
Target Start/End: Original strand, 48488172 - 48488231
Alignment:
Q  328 tctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaa 387  Q
    ||||||||||||||||||   |||||||||||||||| || |||||| ||||||||||||    
T  48488172 tctttaagcactttaaatgataagtttttaatgaaaagttatgtattcaatgcattgaaa 48488231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 326 - 392
Target Start/End: Original strand, 14651382 - 14651448
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgt 392  Q
    ||||||||||||||| |||||| | |||||||||||||| ||||||| | | ||||||| |||||||    
T  14651382 actctttaagcacttaaaatagtaggtttttaatgaaaagttgtgtaatgattgcattggaaattgt 14651448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 358 - 429
Target Start/End: Complemental strand, 18801122 - 18801051
Alignment:
Q  358 atgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttg 429  Q
    ||||||| ||||||||| | || |||||||||||| |||||| |||||| | |||| ||||| |||||||||    
T  18801122 atgaaaagttgtgtattcattgtattgaaaattgtaatagttgacttttgaaaagagtaattgctaaatttg 18801051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 326 - 392
Target Start/End: Original strand, 9718986 - 9719052
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgt 392  Q
    |||||||||||||||||||| | |||||||  ||||||| || |||| | ||| |||||||||||||    
T  9718986 actctttaagcactttaaatggtaagttttatatgaaaagttatgtaatgaatacattgaaaattgt 9719052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 330 - 392
Target Start/End: Original strand, 23015650 - 23015712
Alignment:
Q  330 tttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgt 392  Q
    |||||| ||||||| ||| |||||||| ||||||||||||||||| | ||||||  |||||||    
T  23015650 tttaagaactttaattagtaagttttttatgaaaaattgtgtattgagtgcattataaattgt 23015712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 326 - 391
Target Start/End: Original strand, 31902742 - 31902806
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattg 391  Q
    |||||||||| ||||||||||| || ||||| ||| ||||||||||| | |||| |||||||||||    
T  31902742 actctttaaggactttaaatagtaaattttt-atggaaaattgtgtagtcaatgtattgaaaattg 31902806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 2e-33; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 326 - 472
Target Start/End: Complemental strand, 2864256 - 2864109
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaa 425  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||| ||||||| |||||| |||||| | |||||||||| |||||    
T  2864256 actctttaagcactttaaatagtaagtttttaatgaaaagttgtgtattgaatgcattggaaattgtaatagttgacttttta-aagaataattcctaaa 2864158  T
Q  426 tttgggttatttaaagagtgt--ttgggacactcgttaacaaaaccctt 472  Q
    | |||| | ||||||||||||    ||||||||||||||||| ||||||    
T  2864157 tatgggatgtttaaagagtgtcccggggacactcgttaacaagaccctt 2864109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 326 - 445
Target Start/End: Complemental strand, 39150696 - 39150577
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaa 425  Q
    |||||||||||||||||| ||| ||| |||||||||||| || |||||| ||||||||| ||||||| |||||| |||||| | ||||||||||||||||    
T  39150696 actctttaagcactttaactagtaagattttaatgaaaatttatgtattgaatgcattgtaaattgtaatagttgactttttacaagaataattactaaa 39150597  T
Q  426 tttgggttatttaaagagtg 445  Q
    ||| || |  ||||||||||    
T  39150596 tttaggatgcttaaagagtg 39150577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 298 - 426
Target Start/End: Complemental strand, 44329738 - 44329610
Alignment:
Q  298 gggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatag 397  Q
    ||||||||||||||| |  ||||  || | ||||||| |||||||||||||||||||||| | ||||||| |||||| ||||||||||||||| | ||||    
T  44329738 gggaaatgttaacgagtgtttccacgacattctttaaacactttaaatagaaagtttttagtaaaaaattatgtattgaatgcattgaaaattataatag 44329639  T
Q  398 tttacttttaagaagaataattactaaat 426  Q
    || |||||| | ||||||||||| |||||    
T  44329638 ttgactttttaaaagaataattattaaat 44329610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 301 - 446
Target Start/End: Original strand, 47187789 - 47187933
Alignment:
Q  301 aaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagttt 400  Q
    |||||||||||| || | ||| || ||||||||| ||||| |||| | ||||||||||||||||||| |||||| ||||||||| ||||| | ||||||     
T  47187789 aaatgttaacgagta-tcccgtgacactctttaaacacttaaaatggtaagtttttaatgaaaaattatgtattgaatgcattggaaattataatagttg 47187887  T
Q  401 acttttaagaagaataattactaaatttgggttatttaaagagtgt 446  Q
    | |||| | | |||||||||||||||||||| |  |||||||||||    
T  47187888 attttttaaatgaataattactaaatttgggatgcttaaagagtgt 47187933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 299 - 419
Target Start/End: Original strand, 4851210 - 4851329
Alignment:
Q  299 ggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagt 398  Q
    |||||||||||||||||| || ||||||||||||||||||||||| ||| ||||| || ||||||| ||| ||| ||| ||||||  ||||||| |||||    
T  4851210 ggaaatgttaacgaatacctctgggatactctttaagcactttaattagtaagttctttatgaaaagttgggtagtaagtgcatttgaaattgtaatagt 4851309  T
Q  399 ttacttttaagaagaataatt 419  Q
    | |||||| | ||||||||||    
T  4851310 tgacttttta-aagaataatt 4851329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 326 - 430
Target Start/End: Original strand, 38748713 - 38748817
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaa 425  Q
    |||||||||||||||||| ||| ||||| || ||||||| ||||||||| | ||||||||||||| | |||||| |||||| | |||||||||| |||||    
T  38748713 actctttaagcactttaattagtaagttatttatgaaaagttgtgtattgagtgcattgaaaattataatagttgactttttaaaagaataatttctaaa 38748812  T
Q  426 tttgg 430  Q
    |||||    
T  38748813 tttgg 38748817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 326 - 469
Target Start/End: Original strand, 43397007 - 43397154
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttac-ttttaagaaga-ataattacta 423  Q
    |||| |||| |||||||||||| |||||||||||||||| ||||||||||||||||||| ||||| | |||||| || |||||| || | ||||||||||    
T  43397007 actcgttaaacactttaaatagtaagtttttaatgaaaagttgtgtattaaatgcattggaaattataatagttgactttttaaaaatatataattacta 43397106  T
Q  424 aatttgggttatttaaagagtgtttggga--cactcgttaacaaaacc 469  Q
    ||||| || |  ||||||||||  | |||  |||||||||||||||||    
T  43397107 aatttaggatgcttaaagagtgcctcggaatcactcgttaacaaaacc 43397154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 332 - 444
Target Start/End: Original strand, 48022351 - 48022463
Alignment:
Q  332 taagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttggg 431  Q
    |||||| ||||||||| ||||||||||| ||||| | |||||| ||||||||||||||||  |||||| |||||| | || |||||||||||||| ||||    
T  48022351 taagcattttaaatagtaagtttttaataaaaaaatatgtattgaatgcattgaaaattgcaatagttaactttttaaaacaataattactaaatatggg 48022450  T
Q  432 ttatttaaagagt 444  Q
     |  |||||||||    
T  48022451 atgcttaaagagt 48022463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 326 - 465
Target Start/End: Complemental strand, 7212882 - 7212748
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaa 425  Q
    ||||||||| |||||||||| | ||||||| ||| |||| |||||     ||||||||| ||||||| || ||| |||||| | ||| ||||||||||||    
T  7212882 actctttaaacactttaaattgtaagttttaaataaaaagttgtg-----aatgcattggaaattgtaattgttaactttttaaaagtataattactaaa 7212788  T
Q  426 tttgggttatttaaagagtgtttgggacactcgttaacaa 465  Q
    |||| | || |||||||||| | |||||||||||||||||    
T  7212787 tttgagatacttaaagagtgatcgggacactcgttaacaa 7212748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 340 - 460
Target Start/End: Complemental strand, 8365603 - 8365481
Alignment:
Q  340 ttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttgggttatttaa 439  Q
    |||||||| ||||||||| ||||||||  |||||| ||||||||||| ||||| |||||| | |||| | ||||||||||| ||||||| || | |||||    
T  8365603 ttaaatagtaagtttttattgaaaaatgatgtattgaatgcattgaagattgtaatagttgattttttaaaagaataattattaaatttaggatgtttaa 8365504  T
Q  440 agagtg--tttgggacactcgtt 460  Q
    ||||||  | |||||||||||||    
T  8365503 agagtgcctctgggacactcgtt 8365481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 352 - 431
Target Start/End: Complemental strand, 38491309 - 38491230
Alignment:
Q  352 tttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttggg 431  Q
    ||||||||||||||||||||||| ||||||||| ||||||| |||||| |||||| |  | |||||||||||||||||||    
T  38491309 tttttaatgaaaaattgtgtattgaatgcattgtaaattgtaatagttgactttttaacataataattactaaatttggg 38491230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 330 - 428
Target Start/End: Original strand, 32562350 - 32562447
Alignment:
Q  330 tttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaattt 428  Q
    ||||| |||||||||||| ||||||||| | |||||||||||||| | ||||||||||||||| |||||| | |||| | || ||||||||||||||||    
T  32562350 tttaaacactttaaatagtaagttttta-taaaaaattgtgtattcactgcattgaaaattgtaatagttgaatttttaaaataataattactaaattt 32562447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 299 - 428
Target Start/End: Complemental strand, 34409874 - 34409746
Alignment:
Q  299 ggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagt 398  Q
    |||||||||||||| | |||| |||| | |||||| ||||||||||| | ||||||||||||||||| |||||||| ||||||||| ||||| | ||| |    
T  34409874 ggaaatgttaacgagtgcttctgggacattctttatgcactttaaatggtaagtttttaatgaaaaa-tgtgtattgaatgcattggaaattataataat 34409776  T
Q  399 ttacttttaagaagaataattactaaattt 428  Q
    | | ||| || || || |||||||||||||    
T  34409775 tgattttaaaaaaaaaaaattactaaattt 34409746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 326 - 408
Target Start/End: Complemental strand, 31889277 - 31889194
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaa-ttgtgtattaaatgcattgaaaattgtgatagtttacttttaa 408  Q
    |||||||||||| ||||||| | ||||||||||||||||| ||||||||||||||||||  |||| || |||||| ||||||||    
T  31889277 actctttaagcattttaaatggtaagtttttaatgaaaaagttgtgtattaaatgcattagaaatcgtaatagttgacttttaa 31889194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 361 - 472
Target Start/End: Complemental strand, 39156340 - 39156227
Alignment:
Q  361 aaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttgggttatttaaagagtgttt--gggacactcg 458  Q
    |||||||||||||| ||||||||| |||||||  ||||| |||||| | |||||||||||||||||||  | |  ||||||||||| |  ||| ||||||    
T  39156340 aaaaattgtgtattgaatgcattggaaattgtagtagttgactttttaaaagaataattactaaatttttgatgcttaaagagtgtctcaggggcactcg 39156241  T
Q  459 ttaacaaaaccctt 472  Q
    ||||||| ||||||    
T  39156240 ttaacaagaccctt 39156227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 326 - 420
Target Start/End: Complemental strand, 44329578 - 44329484
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataatta 420  Q
    ||||||||||||||||||||| ||| |||||||| |||| || | ||||||||||| |||||||| | ||| || |||||| | |||||||||||    
T  44329578 actctttaagcactttaaatataaaatttttaataaaaagttatatattaaatgcactgaaaattataataattgactttttaaaagaataatta 44329484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 298 - 431
Target Start/End: Complemental strand, 44829413 - 44829281
Alignment:
Q  298 gggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatag 397  Q
    ||||||| ||||||| |  |||||||| |||||||||| |||||||   | ||||||| ||| |||| ||||||||| |||| ||| |||||||| ||||    
T  44829413 gggaaatattaacgagtgtttccgggacactctttaagtactttaatcggtaagtttt-aataaaaagttgtgtattgaatgtattaaaaattgtaatag 44829315  T
Q  398 tttacttttaagaagaataattactaaatttggg 431  Q
    || || |||   ||||||||||||||||||||||    
T  44829314 ttgacctttttaaagaataattactaaatttggg 44829281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 297 - 431
Target Start/End: Complemental strand, 45640689 - 45640556
Alignment:
Q  297 tgggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgata 396  Q
    |||||||||||||||| |    ||| || |||||||||||| ||||||||| |||||||| ||| ||||||||||| | ||||||||||||||| | |||    
T  45640689 tgggaaatgttaacgagtgtccccgagacactctttaagcattttaaatagtaagtttttgatg-aaaattgtgtaatgaatgcattgaaaattataata 45640591  T
Q  397 gtttacttttaagaagaataattactaaatttggg 431  Q
     || ||||||   ||||||| ||  ||||||||||    
T  45640590 attgactttttgaaagaatagttcttaaatttggg 45640556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 328 - 429
Target Start/End: Original strand, 30822770 - 30822871
Alignment:
Q  328 tctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatt 427  Q
    |||||||||||||||||| | || ||||||   | ||||||||| || |||||| |||||||||| ||| || |||||| |  |||||||||||||||||    
T  30822770 tctttaagcactttaaatggtaaatttttataaataaattgtgttttcaatgcaatgaaaattgtaataattaactttttaagagaataattactaaatt 30822869  T
Q  428 tg 429  Q
    ||    
T  30822870 tg 30822871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 330 - 446
Target Start/End: Original strand, 2994968 - 2995083
Alignment:
Q  330 tttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttg 429  Q
    ||||| |||||||||||| ||||||||| | |||| ||||||||| |    |||||||||| | ||||||||||||| | || ||||||||||||||||     
T  2994968 tttaaacactttaaatagtaagttttta-taaaaagttgtgtatttacaaaattgaaaattataatagtttactttttaaaataataattactaaatttt 2995066  T
Q  430 ggttatttaaagagtgt 446  Q
    || |  |||||||||||    
T  2995067 ggattcttaaagagtgt 2995083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 328 - 399
Target Start/End: Complemental strand, 36563814 - 36563745
Alignment:
Q  328 tctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtt 399  Q
    ||||||| ||||||||||   |||||||| ||||||||||||||||| ||||||||||||||| | ||||||    
T  36563814 tctttaaacactttaaatg--aagttttttatgaaaaattgtgtatttaatgcattgaaaattataatagtt 36563745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 326 - 391
Target Start/End: Complemental strand, 14758672 - 14758608
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattg 391  Q
    |||||||||| ||||||||||| || |||||| |||||||||||| ||| ||||||| ||||||||    
T  14758672 actctttaaggactttaaatagtaaattttta-tgaaaaattgtgcattcaatgcatcgaaaattg 14758608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 328 - 429
Target Start/End: Original strand, 18432947 - 18433048
Alignment:
Q  328 tctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatt 427  Q
    |||||||||  ||||||||  || || |||||||||| |||| |||| ||| |||| |||||||| | |||| || ||| | ||||||||||||||||||    
T  18432947 tctttaagccgtttaaatattaaattcttaatgaaaagttgtatattgaatacattaaaaattgtaacagttaacattttaaaagaataattactaaatt 18433046  T
Q  428 tg 429  Q
    ||    
T  18433047 tg 18433048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 366 - 427
Target Start/End: Original strand, 34232739 - 34232800
Alignment:
Q  366 ttgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatt 427  Q
    ||||||||| || |||||||||||||| |||||| |||||| | |||||||||| |||||||    
T  34232739 ttgtgtattgaaagcattgaaaattgtaatagttgactttttaaaagaataattgctaaatt 34232800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 326 - 446
Target Start/End: Complemental strand, 3982378 - 3982259
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaa 425  Q
    ||||||||| |||||||||||| || |||||| | |||| |||| |||| ||||||||  ||||| | |||||| ||||||   || |||||||||||||    
T  3982378 actctttaaacactttaaatagtaaatttttatt-aaaagttgtctattcaatgcattataaattataatagttgactttttctaaaaataattactaaa 3982280  T
Q  426 tttgggttatttaaagagtgt 446  Q
    ||||   | ||||||||||||    
T  3982279 tttgatatttttaaagagtgt 3982259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 352 - 428
Target Start/End: Complemental strand, 8794504 - 8794428
Alignment:
Q  352 tttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaattt 428  Q
    ||||| || |||| ||||||||  | ||||||||||||| | |||||| |||||| | |||||||||||||||||||    
T  8794504 ttttttataaaaagttgtgtatggagtgcattgaaaattataatagttgactttttaaaagaataattactaaattt 8794428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 336 - 428
Target Start/End: Original strand, 40460725 - 40460817
Alignment:
Q  336 cactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaattt 428  Q
    |||||||||||| ||||||||||||||||||||| |||| |||  |||| ||| ||| ||| || | |||| | | ||||||||| |||||||    
T  40460725 cactttaaatagtaagtttttaatgaaaaattgtatattgaataaattggaaactgtaataattgattttttaaatgaataattattaaattt 40460817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 519 - 610
Target Start/End: Complemental strand, 48617261 - 48617169
Alignment:
Q  519 cttgtcaaacgtgttgcggcaatttaatcttcttcaaacgcgttgcaacaaatcattttc-ttcaaaagaatcacatcaaaatctccttcaaa 610  Q
    ||||||||| | ||||| | |||||||||||||||||| | || |||||||||| || || |||||| | |||||| ||||||||| ||||||    
T  48617261 cttgtcaaatgcgttgcagtaatttaatcttcttcaaaggtgtcgcaacaaatcgttctctttcaaatgcatcacaacaaaatctcattcaaa 48617169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 330 - 446
Target Start/End: Original strand, 39914604 - 39914717
Alignment:
Q  330 tttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttg 429  Q
    |||||||||||||| ||| | |||||| || ||||   ||||||| | ||||||||||||||| |||||| |||||| | ||||| ||||  ||||||||    
T  39914604 tttaagcactttaattagtaggttttttattaaaa---gtgtattgagtgcattgaaaattgtaatagttgactttttaaaagaacaattgttaaatttg 39914700  T
Q  430 ggttatttaaagagtgt 446  Q
    |  |  |||||||||||    
T  39914701 gtatgcttaaagagtgt 39914717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 326 - 446
Target Start/End: Original strand, 14746192 - 14746312
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagttta-cttttaagaagaataattactaa 424  Q
    |||||| ||||||||||| ||| ||||| |  ||||||| ||||||||| |  |||||||||||| | | |||| |  ||||||||| ||||||| ||||    
T  14746192 actcttcaagcactttaattagtaagttctatatgaaaagttgtgtattcatagcattgaaaattataacagttgattttttaagaa-aataattgctaa 14746290  T
Q  425 atttgggttatttaaagagtgt 446  Q
    ||||||  || |||||||||||    
T  14746291 atttggtatacttaaagagtgt 14746312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 71; Significance: 1e-31; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 300 - 426
Target Start/End: Original strand, 62491 - 62617
Alignment:
Q  300 gaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtt 399  Q
    ||||||||||||| |   |||||| ||||||||||||||||||||||| ||||||||||| ||||||| |||||| |||||||||||||| || ||||||    
T  62491 gaaatgttaacgagtgtctccggggtactctttaagcactttaaatagtaagtttttaataaaaaattatgtattgaatgcattgaaaatcgtaatagtt 62590  T
Q  400 tacttttaagaagaataattactaaat 426  Q
     |||||| | |||||||||||||||||    
T  62591 gactttttaaaagaataattactaaat 62617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 1e-31; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 294 - 428
Target Start/End: Original strand, 19890149 - 19890283
Alignment:
Q  294 ttatgggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtg 393  Q
    |||||||||||||||| |  ||| ||| ||| | ||||||||||||| |||||  |||||||||||||||| ||||||||||||||||||| |||||||     
T  19890149 ttatgggaaatgttaatgtgtacctccaggacattctttaagcacttaaaataataagtttttaatgaaaagttgtgtattaaatgcattggaaattgta 19890248  T
Q  394 atagtttacttttaagaagaataattactaaattt 428  Q
    |||||| |||||| | |||||||||||||||||||    
T  19890249 atagttgactttttaaaagaataattactaaattt 19890283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 296 - 445
Target Start/End: Original strand, 34904750 - 34904899
Alignment:
Q  296 atgggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgat 395  Q
    |||| |||||| ||||| | |||||||   |||||||||||||||||||| | ||||| ||||||||||||| |||||||||| |||| |||||||| ||    
T  34904750 atggaaaatgtcaacgagtgcttccggagcactctttaagcactttaaattgtaagttattaatgaaaaattttgtattaaattcattaaaaattgtaat 34904849  T
Q  396 agtttacttttaagaagaataattactaaatttgggttatttaaagagtg 445  Q
    |||| | |||| | ||||||||||||||||| || | || ||||||||||    
T  34904850 agttgattttttaaaagaataattactaaatatgagatacttaaagagtg 34904899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 328 - 444
Target Start/End: Original strand, 31017302 - 31017418
Alignment:
Q  328 tctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatt 427  Q
    ||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||   ||| || ||||||   ||||||||||||||||||    
T  31017302 tctttaagcactttaaatgaaaagtttttaatgaaaagttgtgtattaaatgcattgaaaattaaaatatttgacttttttaaagaataattactaaatt 31017401  T
Q  428 tgggttatttaaagagt 444  Q
    |||| || || ||||||    
T  31017402 tgggatacttgaagagt 31017418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 330 - 442
Target Start/End: Original strand, 31452343 - 31452454
Alignment:
Q  330 tttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttg 429  Q
    |||||||||||||||||| ||||||||||| |||| ||||||||| ||||||||||||||||| || ||| |||||| | |||||||||||||||| |||    
T  31452343 tttaagcactttaaatagtaagtttttaat-aaaagttgtgtattgaatgcattgaaaattgtaattgttgactttttaaaagaataattactaaacttg 31452441  T
Q  430 ggttatttaaaga 442  Q
    || | ||||||||    
T  31452442 ggatgtttaaaga 31452454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 326 - 445
Target Start/End: Original strand, 9448946 - 9449064
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaa 425  Q
    ||||||||| |||||||||| | |||||||||||||||| ||||||||| |||| |||||||||| | |||||| | |||||| ||||||||||||||||    
T  9448946 actctttaaacactttaaatggtaagtttttaatgaaaagttgtgtattgaatgtattgaaaattataatagttgatttttaa-aagaataattactaaa 9449044  T
Q  426 tttgggttatttaaagagtg 445  Q
    |||| |||  ||||||||||    
T  9449045 tttgagttgcttaaagagtg 9449064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 330 - 445
Target Start/End: Complemental strand, 20065020 - 20064906
Alignment:
Q  330 tttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttg 429  Q
    |||||||||||||||||||||| ||||| |||||||||||||||| ||| ||||||||||||| |||||| |||||| | |||||||||||||| ||||     
T  20065020 tttaagcactttaaatagaaaggtttta-tgaaaaattgtgtatttaatacattgaaaattgtaatagttgactttttaaaagaataattactatattta 20064922  T
Q  430 ggttatttaaagagtg 445  Q
    || |  ||||||||||    
T  20064921 ggatccttaaagagtg 20064906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 326 - 445
Target Start/End: Original strand, 1334876 - 1334995
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaa 425  Q
    ||||||||||||||||||||   ||||||||||||||||||||| |||| ||||||||| ||||||| |||||| | ||||   ||||||||||| ||||    
T  1334876 actctttaagcactttaaatgataagtttttaatgaaaaattgtatattgaatgcattggaaattgtaatagttgatttttttaaagaataattattaaa 1334975  T
Q  426 tttgggttatttaaagagtg 445  Q
    |||||| |  ||||||||||    
T  1334976 tttgggatgcttaaagagtg 1334995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 330 - 431
Target Start/End: Complemental strand, 4762459 - 4762358
Alignment:
Q  330 tttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttg 429  Q
    ||||| |||||||||||| || |||||||| |||||||||||||| ||||||||||||||| | |||||| |||||  | || |||||||||||||||||    
T  4762459 tttaatcactttaaatagtaaatttttaataaaaaattgtgtattgaatgcattgaaaattataatagttgactttataaaataataattactaaatttg 4762360  T
Q  430 gg 431  Q
    ||    
T  4762359 gg 4762358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 348 - 468
Target Start/End: Complemental strand, 14295719 - 14295599
Alignment:
Q  348 aaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttgggttatttaaagagtgt- 446  Q
    |||||||||| | |||| ||||||||| ||||||||||||||||| |||||| || ||| | |||||||||||||||||||||| |  ||||||| |||     
T  14295719 aaagttttta-taaaaagttgtgtattcaatgcattgaaaattgtaatagttaaccttttaaaagaataattactaaatttgggattcttaaagaatgtc 14295621  T
Q  447 ttgggacactcgttaacaaaac 468  Q
     |||||||||||||||||||||    
T  14295620 atgggacactcgttaacaaaac 14295599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 320 - 406
Target Start/End: Original strand, 29239235 - 29239321
Alignment:
Q  320 cgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttactttt 406  Q
    ||||| |||||||||||||||||| ||| || | ||||||||||||| ||||||| ||||||||||||||||| |||||| ||||||    
T  29239235 cgggacactctttaagcactttaattagtaaatctttaatgaaaaatggtgtattgaatgcattgaaaattgtaatagttgactttt 29239321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 326 - 446
Target Start/End: Complemental strand, 15505658 - 15505538
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaa 425  Q
    |||||| || |||||||||||| ||||||  |||||||| ||||||||| |||| |||||||||| | |||||||||||||   ||||||||||| ||||    
T  15505658 actcttgaaacactttaaatagtaagtttggaatgaaaagttgtgtattgaatgtattgaaaattataatagtttactttttgaaagaataattattaaa 15505559  T
Q  426 tttgggttatttaaagagtgt 446  Q
    ||||   || |||||||||||    
T  15505558 tttgaaatacttaaagagtgt 15505538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 328 - 428
Target Start/End: Complemental strand, 37993190 - 37993090
Alignment:
Q  328 tctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatt 427  Q
    ||||||| || ||||||||| || |||||||| ||||||| |||||||||||||||||||||||| |||||| | ||||   ||||||| ||| ||||||    
T  37993190 tctttaaacattttaaatagtaaatttttaataaaaaattatgtattaaatgcattgaaaattgtaatagttgattttttgaaagaatagttattaaatt 37993091  T
Q  428 t 428  Q
    |    
T  37993090 t 37993090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 326 - 429
Target Start/End: Complemental strand, 41933245 - 41933142
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaa 425  Q
    |||||||||||||||||| ||| || ||||| || |||| |||| || | | ||||||||||||||| |||||| |||||| | |||||||||| |||||    
T  41933245 actctttaagcactttaattagtaaattttttataaaaagttgtttactgagtgcattgaaaattgtaatagttgactttttaaaagaataattgctaaa 41933146  T
Q  426 tttg 429  Q
    ||||    
T  41933145 tttg 41933142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 340 - 446
Target Start/End: Complemental strand, 7673294 - 7673188
Alignment:
Q  340 ttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttgggttatttaa 439  Q
    |||||||  |||||||  || |||| ||||||| |||||| |||||||||||| |||||| ||||||||  ||||||||| |||||||| || || ||||    
T  7673294 ttaaataataagttttatataaaaagttgtgtactaaatgtattgaaaattgtaatagttgacttttaaagagaataattgctaaatttaggatagttaa 7673195  T
Q  440 agagtgt 446  Q
    |||||||    
T  7673194 agagtgt 7673188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 326 - 428
Target Start/End: Complemental strand, 19514985 - 19514883
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaa 425  Q
    |||||||||||||||||||| | |||||||  ||||||| |||| |||| | |||||||| |||| | |||||| |||||||| ||||||||||  ||||    
T  19514985 actctttaagcactttaaattgtaagttttatatgaaaagttgtatattcattgcattgataattataatagttgacttttaaaaagaataattgttaaa 19514886  T
Q  426 ttt 428  Q
    |||    
T  19514885 ttt 19514883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 352 - 470
Target Start/End: Original strand, 1298981 - 1299101
Alignment:
Q  352 tttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttactttt--aagaagaataattactaaatttgggttatttaaagagtgtttg 449  Q
    ||||||||||||| || |||||||||| || ||||||||||||||||| ||||||  || || ||| |||||||||| ||   |  |||||||||||       
T  1298981 tttttaatgaaaagttatgtattaaatacagtgaaaattgtgatagttgactttttaaaaaataattattactaaatatgaagtgcttaaagagtgtccc 1299080  T
Q  450 ggacactcgttaacaaaaccc 470  Q
    |||||||||||||||||||||    
T  1299081 ggacactcgttaacaaaaccc 1299101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 326 - 428
Target Start/End: Original strand, 9173698 - 9173801
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgta-ttaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaa 424  Q
    ||||||||| |||||||| ||| |||||||| ||||||||||||||| || | || |||||||||||| |||||| | |||| | || ||||||| ||||    
T  9173698 actctttaaacactttaattagcaagttttttatgaaaaattgtgtatttgattgtattgaaaattgtaatagttgattttttaaaaaaataattgctaa 9173797  T
Q  425 attt 428  Q
    ||||    
T  9173798 attt 9173801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 353 - 465
Target Start/End: Original strand, 11944892 - 11945006
Alignment:
Q  353 ttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttgggttatttaaagagtg--tttgg 450  Q
    |||| ||||||| ||||||||| ||||||||||||||||| |||||| || |||   || ||||||||||||| || || |  ||||||||||  | |||    
T  11944892 tttttatgaaaagttgtgtattcaatgcattgaaaattgtaatagttgacattttttaaaaataattactaaaattaggatccttaaagagtgtctctgg 11944991  T
Q  451 gacactcgttaacaa 465  Q
     ||||||||||||||    
T  11944992 aacactcgttaacaa 11945006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 326 - 391
Target Start/End: Original strand, 33962936 - 33963000
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattg 391  Q
    |||||||||| ||||||||||  || |||||| |||||||||||| ||| ||||||||||||||||    
T  33962936 actctttaaggactttaaataataaattttta-tgaaaaattgtgcattcaatgcattgaaaattg 33963000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 324 - 429
Target Start/End: Original strand, 38533859 - 38533963
Alignment:
Q  324 atactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattacta 423  Q
    |||| ||||||||| || |||||| |||||| ||| ||||||||||||||| ||||||||  |||||   |||||| ||| || | || |||||||||||    
T  38533859 atacactttaagcatttgaaatagtaagtttgtaaagaaaaattgtgtattgaatgcattagaaattacaatagttgactattta-aaaaataattacta 38533957  T
Q  424 aatttg 429  Q
    ||||||    
T  38533958 aatttg 38533963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 297 - 470
Target Start/End: Complemental strand, 8964533 - 8964361
Alignment:
Q  297 tgggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgata 396  Q
    |||||||||||||||| | || ||||| ||||||||||| ||  ||  ||  |||| |||| |||||| ||||||| | ||||||||| ||||||  |||    
T  8964533 tgggaaatgttaacgattgct-ccggggtactctttaaggaccatatgtaataagtattta-tgaaaatttgtgtaatcaatgcattggaaattgaaata 8964436  T
Q  397 gtttacttttaagaagaataattactaaatttgggttatttaaagagtgtttgg-gacactcgttaacaaaaccc 470  Q
     |||||||||   ||||||||||||| ||||| |  |  ||||| |||| |||| ||||||||||||| ||||||    
T  8964435 ttttacttttttaaagaataattacttaatttagaatgcttaaacagtgcttggagacactcgttaaccaaaccc 8964361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 331 - 428
Target Start/End: Complemental strand, 5524570 - 5524473
Alignment:
Q  331 ttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaattt 428  Q
    ||||||||||||||||| || | || ||| |||| ||||| ||| |||||||| ||| |||| ||| || |||||| | || ||||||||||| ||||    
T  5524570 ttaagcactttaaatagtaaatcttaaataaaaagttgtgcattgaatgcattaaaagttgtaataattaacttttcaaaaaaataattactatattt 5524473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 4e-31; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 300 - 424
Target Start/End: Original strand, 29083865 - 29083990
Alignment:
Q  300 gaaatgttaacgaatacttccgggatactctttaagcactttaaa-tagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagt 398  Q
    ||||||||||||| | | ||| ||||||||||||||||||||||| ||| ||||||||| |||||| |||||||||||||||||| |||||||| |||||    
T  29083865 gaaatgttaacgagtgcctccaggatactctttaagcactttaaaatagtaagtttttattgaaaagttgtgtattaaatgcattaaaaattgtaatagt 29083964  T
Q  399 ttacttttaagaagaataattactaa 424  Q
    | |||||| | |||||||||||||||    
T  29083965 taactttttaaaagaataattactaa 29083990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 298 - 428
Target Start/End: Complemental strand, 51351419 - 51351289
Alignment:
Q  298 gggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatag 397  Q
    |||||||||| ||| || |||| |||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||| ||||| | |||     
T  51351419 gggaaatgttgacggatgcttctgggacactctttaagcactttaaaaagtaagtttttaatgaaaaattgtgtattaaatgtattggaaattataatac 51351320  T
Q  398 tttacttttaagaagaataattactaaattt 428  Q
    |  |||||| | ||||||||||| |||||||    
T  51351319 taaactttttaaaagaataattattaaattt 51351289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 289 - 429
Target Start/End: Original strand, 12086718 - 12086858
Alignment:
Q  289 ttatgttatgggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaa 388  Q
    |||| ||||||||||||||||||| | |   ||||| ||| |||||| |||  |||||| ||||||||||||||||| |||||||| |||||| ||||||    
T  12086718 ttattttatgggaaatgttaacgagtgccctcgggacactatttaagtactcgaaatagtaagtttttaatgaaaaaatgtgtattgaatgcactgaaaa 12086817  T
Q  389 ttgtgatagtttacttttaagaagaataattactaaatttg 429  Q
    || | |||| |  ||||||| ||||||||||||||||||||    
T  12086818 ttataatagatgtcttttaaaaagaataattactaaatttg 12086858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 298 - 446
Target Start/End: Original strand, 48180135 - 48180283
Alignment:
Q  298 gggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatag 397  Q
    ||||||||||||||||||  ||||| | ||||||| | |||||||||||| |||||||| ||||||  ||| |||   ||||||||| ||||||| ||||    
T  48180135 gggaaatgttaacgaatatctccggaacactcttttatcactttaaatagtaagttttttatgaaatgttgggtaaccaatgcattggaaattgtaatag 48180234  T
Q  398 tttacttttaagaagaataattactaaatttgggttatttaaagagtgt 446  Q
    || |||||| | ||||||||||  |||||| ||| |  |||||||||||    
T  48180235 ttgactttttaaaagaataattgttaaattggggatgcttaaagagtgt 48180283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 349 - 445
Target Start/End: Original strand, 49362369 - 49362465
Alignment:
Q  349 aagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttgggttatttaaagagtg 445  Q
    ||||||||||| ||||||||| |||||||| ||||| ||||||| |||||| |||||| | ||||||||||| |||||||||| | |||||| ||||    
T  49362369 aagtttttaataaaaaattgtatattaaatacattggaaattgtaatagttaactttttaaaagaataattattaaatttgggatgtttaaaaagtg 49362465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 294 - 406
Target Start/End: Complemental strand, 47639039 - 47638929
Alignment:
Q  294 ttatgggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtg 393  Q
    ||||||||||||||||| ||| ||||||||  |||  ||||||| ||||| ||| ||||| || ||||||||||||||||| | |||||| ||||||||     
T  47639039 ttatgggaaatgttaactaatgcttccggggcact--ttaagcattttaattagtaagttctttatgaaaaattgtgtattgagtgcattaaaaattgta 47638942  T
Q  394 atagtttactttt 406  Q
    |||||| ||||||    
T  47638941 atagttaactttt 47638929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 298 - 430
Target Start/End: Original strand, 39551820 - 39551951
Alignment:
Q  298 gggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatag 397  Q
    ||||||||||||||| | ||| | || |||||||||| |||||||| ||| ||||| || ||||||| |||| |||| | || |||||||||||| ||||    
T  39551820 gggaaatgttaacgagtgctttcagggtactctttaaacactttaattagtaagttctttatgaaaagttgtttattgagtgtattgaaaattgt-atag 39551918  T
Q  398 tttacttttaagaagaataattactaaatttgg 430  Q
    || | |||| | |||||||||| ||||||||||    
T  39551919 ttgattttttaaaagaataattgctaaatttgg 39551951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 357 - 420
Target Start/End: Complemental strand, 26143153 - 26143090
Alignment:
Q  357 aatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataatta 420  Q
    ||||||||||||||||||||||||||| |||||||| |||||| |||||| | |||||||||||    
T  26143153 aatgaaaaattgtgtattaaatgcattcaaaattgtaatagttgactttttaaaagaataatta 26143090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 349 - 445
Target Start/End: Original strand, 42846020 - 42846117
Alignment:
Q  349 aagtttttaatgaaaaattgtgtattaaatgc-attgaaaattgtgatagtttacttttaagaagaataattactaaatttgggttatttaaagagtg 445  Q
    |||||||||||||||| ||||||||| ||||| |||||||||||  |||||| ||||||   ||||||||||||||||||| || |  ||||||||||    
T  42846020 aagtttttaatgaaaagttgtgtattgaatgcaattgaaaattgaaatagttgactttttcaaagaataattactaaatttaggatgcttaaagagtg 42846117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 349 - 416
Target Start/End: Complemental strand, 42939923 - 42939856
Alignment:
Q  349 aagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaata 416  Q
    ||||||| |||||||||||||||||||||| ||||||||||||  |||||| |||||| | |||||||    
T  42939923 aagttttaaatgaaaaattgtgtattaaattcattgaaaattgcaatagttgactttttaaaagaata 42939856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 326 - 406
Target Start/End: Original strand, 26900015 - 26900095
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttactttt 406  Q
    ||||||||| |||||||||| | || ||||  ||||||| || |||| ||||||||||||||||||| |||||| ||||||    
T  26900015 actctttaaacactttaaatggtaaattttatatgaaaagttatgtaataaatgcattgaaaattgtaatagttgactttt 26900095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 297 - 445
Target Start/End: Original strand, 45529083 - 45529230
Alignment:
Q  297 tgggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgata 396  Q
    |||||||||||||||| | |  ||||||||||||||||||||  | ||||| |||||||| ||||||| || |||| | |||||| ||||| |||| |      
T  45529083 tgggaaatgttaacgagtgcccccgggatactctttaagcacccttaatagtaagttttt-atgaaaatttatgtaatcaatgcactgaaacttgtaacg 45529181  T
Q  397 gtttacttttaagaagaataattactaaatttgggttatttaaagagtg 445  Q
     || ||||||  |||||||| || ||||||||||| |  ||||||||||    
T  45529182 tttgacttttttgaagaatattttctaaatttgggatgcttaaagagtg 45529230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 349 - 428
Target Start/End: Complemental strand, 24791587 - 24791509
Alignment:
Q  349 aagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaattt 428  Q
    |||||||||||||||| || |||||| ||| ||||||||||||| |||||| |||||| | ||||||||  |||||||||    
T  24791587 aagtttttaatgaaaagttatgtattgaatacattgaaaattgtaatagttgacttttta-aagaataacgactaaattt 24791509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 331 - 426
Target Start/End: Original strand, 35177813 - 35177908
Alignment:
Q  331 ttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaat 426  Q
    |||||||||| |||||| || |||||||  ||||||||| || ||||||||||||| ||| | ||| || |||||| | ||||||||||| |||||    
T  35177813 ttaagcacttaaaatagtaaatttttaagaaaaaattgtatactaaatgcattgaatattataatatttaactttttaaaagaataattattaaat 35177908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 326 - 416
Target Start/End: Original strand, 41309843 - 41309936
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattg---tgtattaaatgcattgaaaattgtgatagtttacttttaagaagaata 416  Q
    ||||||||| ||||||||||   ||||||||||||||||||||   | ||| |||||||||||||||||| ||| || |||||| | |||||||    
T  41309843 actctttaaacactttaaatgataagtttttaatgaaaaattgtactatatcaaatgcattgaaaattgtaataattaactttttaaaagaata 41309936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 361 - 446
Target Start/End: Original strand, 52638185 - 52638270
Alignment:
Q  361 aaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttgggttatttaaagagtgt 446  Q
    |||||||||||||| | ||||||| ||||||| ||||||  ||||| | || |||||||||||||||| || |  |||||||||||    
T  52638185 aaaaattgtgtattcactgcattggaaattgtaatagttggctttttaaaataataattactaaattttggattcttaaagagtgt 52638270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 300 - 392
Target Start/End: Original strand, 48811335 - 48811426
Alignment:
Q  300 gaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgt 392  Q
    ||||||||||||| |   |||| | ||||||||||  ||||| ||||| ||||||||| |||||||||||||| | |||||||||||| ||||    
T  48811335 gaaatgttaacgagtgtctccgaggtactctttaaaaacttttaatagtaagttttta-tgaaaaattgtgtaatcaatgcattgaaatttgt 48811426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 330 - 425
Target Start/End: Complemental strand, 16663086 - 16662992
Alignment:
Q  330 tttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaa 425  Q
    ||||| |||||||||||  ||||||||| | |||| ||||||||| | |||||||  |||||| |||||| |||||| | || |||||||||||||    
T  16663086 tttaaacactttaaataataagttttta-taaaaagttgtgtattcactgcattggtaattgtaatagttgactttttaaaataataattactaaa 16662992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 477 - 610
Target Start/End: Original strand, 39559965 - 39560100
Alignment:
Q  477 aaatattagagaaagttggaaact-aacccagatgactcacaacttgtcaaacgtgttgcggcaatttaatcttcttcaaacgcgttgcaacaaatcatt 575  Q
    |||| ||||||||||||| ||||| ||||||| || ||   | | |||||||| |||||| |||||||||||| |||||||  | | | |||||||  ||    
T  39559965 aaatgttagagaaagttgaaaacttaacccaggtggcttctagcctgtcaaacatgttgcagcaatttaatctccttcaaagacatcgtaacaaattgtt 39560064  T
Q  576 tt-cttcaaaagaatcacatcaaaatctccttcaaa 610  Q
    || ||||||| | ||||||||||| |||||||||||    
T  39560065 ttccttcaaaggcatcacatcaaattctccttcaaa 39560100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 357 - 423
Target Start/End: Original strand, 22730509 - 22730575
Alignment:
Q  357 aatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattacta 423  Q
    |||||||| || |||| | ||||||||||||||| | |||||| |||||| | ||||||||||||||    
T  22730509 aatgaaaatttttgtaattaatgcattgaaaattataatagttgactttttaaaagaataattacta 22730575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 301 - 355
Target Start/End: Original strand, 46093528 - 46093582
Alignment:
Q  301 aaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttt 355  Q
    |||||||||||| | | |||||| ||||||||||| ||||||||||| |||||||    
T  46093528 aaatgttaacgagtgcctccggggtactctttaagaactttaaatagtaagtttt 46093582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 7e-27; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 326 - 428
Target Start/End: Original strand, 17215675 - 17215777
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaa 425  Q
    |||||||||||||||||||| | ||||||||||| ||||||||| |||| ||||||||||||||||| |||||| |||||| | || |||||||||||||    
T  17215675 actctttaagcactttaaatggtaagtttttaataaaaaattgtttattgaatgcattgaaaattgtaatagttgactttttaaaaaaataattactaaa 17215774  T
Q  426 ttt 428  Q
    |||    
T  17215775 ttt 17215777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 320 - 406
Target Start/End: Complemental strand, 31855174 - 31855088
Alignment:
Q  320 cgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttactttt 406  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||| ||||||| |||||| ||||||    
T  31855174 cgggatactctttaagcactttaaatagtaagtttttaatgaaaaattgtatattgaatgcattggaaattgtaatagttgactttt 31855088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 298 - 420
Target Start/End: Complemental strand, 32823819 - 32823697
Alignment:
Q  298 gggaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatag 397  Q
    ||||||||||||||| | | |||||   |||||||||||||||||||||  |||||||||||||||| ||||||||| ||||||||||||||||| |||     
T  32823819 gggaaatgttaacgagtgcctccggagcactctttaagcactttaaataacaagtttttaatgaaaagttgtgtattgaatgcattgaaaattgtaataa 32823720  T
Q  398 tttacttttaagaagaataatta 420  Q
    || |||||| | |||||||||||    
T  32823719 ttgacttttcaaaagaataatta 32823697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 326 - 446
Target Start/End: Original strand, 1479085 - 1479204
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaa 425  Q
    |||||||||||||||||||| | || |||||| || ||||||||||||| ||||||||||||||||| ||| ||  ||||| | |||||| |||||||||    
T  1479085 actctttaagcactttaaatggtaaattttta-tgtaaaattgtgtattcaatgcattgaaaattgtcataattgcctttttaaaagaatgattactaaa 1479183  T
Q  426 tttgggttatttaaagagtgt 446  Q
    |||||| | ||||||||||||    
T  1479184 tttgggatctttaaagagtgt 1479204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 301 - 424
Target Start/End: Complemental strand, 28874538 - 28874415
Alignment:
Q  301 aaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagttt 400  Q
    |||||||||||| | | ||||||||| ||||||| || ||||||||  ||||||||||||||||||| |||||| ||||||||| ||||| | ||||||     
T  28874538 aaatgttaacgagtgcctccgggatattctttaaacattttaaataacaagtttttaatgaaaaattttgtattgaatgcattggaaattataatagttg 28874439  T
Q  401 acttttaagaagaataattactaa 424  Q
    | |||| | |||||||||||||||    
T  28874438 atttttcaaaagaataattactaa 28874415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 301 - 390
Target Start/End: Complemental strand, 30801880 - 30801791
Alignment:
Q  301 aaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaatt 390  Q
    |||||||||||| |||  |||||| | |||||||||||||||||||| ||||||||||| |||| ||||||||| |||||||||||||||    
T  30801880 aaatgttaacgagtacccccgggacattctttaagcactttaaatagcaagtttttaattaaaagttgtgtattgaatgcattgaaaatt 30801791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 326 - 430
Target Start/End: Complemental strand, 7421786 - 7421682
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaa 425  Q
    |||||||||||||||||||||| ||  ||||| | |||| ||||||||||||||||||||||||||| ||| || |||||| | |  |||||||||||||    
T  7421786 actctttaagcactttaaatagtaaagttttattaaaaagttgtgtattaaatgcattgaaaattgtaatatttgactttttaaataaataattactaaa 7421687  T
Q  426 tttgg 430  Q
    |||||    
T  7421686 tttgg 7421682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 300 - 428
Target Start/End: Original strand, 24103745 - 24103872
Alignment:
Q  300 gaaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtt 399  Q
    ||||||||||||| |  |||||  | |||||||||  ||||||||||  || |||||||| |||||||||||||||||| |||| |||||||| ||||||    
T  24103745 gaaatgttaacgagtgattccgaaacactctttaat-actttaaataataaatttttaattaaaaattgtgtattaaattcattaaaaattgtaatagtt 24103843  T
Q  400 tacttttaagaagaataattactaaattt 428  Q
     | |||||| |  ||||||||||||||||    
T  24103844 aatttttaaaacaaataattactaaattt 24103872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 326 - 446
Target Start/End: Complemental strand, 27778867 - 27778748
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttac-ttttaagaagaataattactaa 424  Q
    |||||||||||||||||||| | || |||||| |||||||| ||||||| ||||||||||||||| | || ||| || |||||| || ||||||||||||    
T  27778867 actctttaagcactttaaatggtaaattttta-tgaaaaat-gtgtattgaatgcattgaaaattataatcgttgactttttaaaaaaaataattactaa 27778770  T
Q  425 atttgggttatttaaagagtgt 446  Q
    |||| || |  |||||||||||    
T  27778769 atttaggattcttaaagagtgt 27778748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 326 - 391
Target Start/End: Original strand, 34231948 - 34232012
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattg 391  Q
    ||||||||||| |||||||| ||||||| |||||||||| ||||||||||||| ||||||||||||    
T  34231948 actctttaagccctttaaat-gaaagttcttaatgaaaagttgtgtattaaatacattgaaaattg 34232012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 349 - 428
Target Start/End: Complemental strand, 1841074 - 1840995
Alignment:
Q  349 aagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaattt 428  Q
    ||||||||||| |||| ||||||||| ||||||||| ||||||| |||||| | |||| | ||||||||||| |||||||    
T  1841074 aagtttttaattaaaagttgtgtattgaatgcattggaaattgtaatagttgattttttaaaagaataattattaaattt 1840995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 334 - 424
Target Start/End: Original strand, 5446662 - 5446752
Alignment:
Q  334 agcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaa 424  Q
    |||||||||||||| || |||||||| |||| | ||| ||| ||||||||||||||||| | |||| ||| || | |||||||||||||||    
T  5446662 agcactttaaatagcaattttttaattaaaagtggtgcattgaatgcattgaaaattgtaacagttgactattcaaaagaataattactaa 5446752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 352 - 426
Target Start/End: Original strand, 26669297 - 26669371
Alignment:
Q  352 tttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaat 426  Q
    ||||||||||||| || |||||||||| || |||||||||| |||||| |||||| | ||||||||||| |||||    
T  26669297 tttttaatgaaaagttatgtattaaatacagtgaaaattgtaatagttgactttttaaaagaataattattaaat 26669371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 352 - 445
Target Start/End: Complemental strand, 30739687 - 30739594
Alignment:
Q  352 tttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttgggttatttaaagagtg 445  Q
    ||||||||||||||||||||||| ||||||||| |||| ||   |||| |||||| |  |||||||||||||||||| |  || ||||||||||    
T  30739687 tttttaatgaaaaattgtgtattgaatgcattggaaatcgtaccagttaactttttaatagaataattactaaatttagaatacttaaagagtg 30739594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 353 - 429
Target Start/End: Original strand, 1371183 - 1371259
Alignment:
Q  353 ttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttg 429  Q
    |||| ||||||||| || |||| ||||||||||||||||||  |||| |||||| | ||||||||||| ||||||||    
T  1371183 tttttatgaaaaatcgtatattcaatgcattgaaaattgtggaagttgactttttaaaagaataattattaaatttg 1371259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 353 - 429
Target Start/End: Original strand, 1378931 - 1379007
Alignment:
Q  353 ttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttg 429  Q
    |||| ||||||||| || |||| ||||||||||||||||||  |||| |||||| | ||||||||||| ||||||||    
T  1378931 tttttatgaaaaatcgtatattcaatgcattgaaaattgtggaagttgactttttaaaagaataattattaaatttg 1379007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 330 - 446
Target Start/End: Original strand, 2692427 - 2692542
Alignment:
Q  330 tttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttg 429  Q
    ||||| |||||||||||| || |||| ||| |||| ||||||||| | | ||||| ||||||| |||||| |||||| | || ||||||||||||||||     
T  2692427 tttaaacactttaaatagtaaatttt-aataaaaagttgtgtattcacttcattggaaattgtaatagttgactttttaaaataataattactaaatttt 2692525  T
Q  430 ggttatttaaagagtgt 446  Q
    || |  |||||||||||    
T  2692526 ggattcttaaagagtgt 2692542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 326 - 399
Target Start/End: Complemental strand, 2864991 - 2864917
Alignment:
Q  326 actctttaagcactttaaatagaaagttttta-atgaaaaattgtgtattaaatgcattgaaaattgtgatagtt 399  Q
    ||||||||| || ||||||| | ||||||||  ||||||||||||||||| ||||||||| ||||||| ||||||    
T  2864991 actctttaaacattttaaatggtaagttttttgatgaaaaattgtgtatttaatgcattgtaaattgtaatagtt 2864917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 352 - 399
Target Start/End: Complemental strand, 2884175 - 2884128
Alignment:
Q  352 tttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtt 399  Q
    ||||| ||||||||||||||||| ||||||||| ||||||| ||||||    
T  2884175 ttttttatgaaaaattgtgtatttaatgcattgtaaattgtaatagtt 2884128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 327 - 446
Target Start/End: Original strand, 19293446 - 19293565
Alignment:
Q  327 ctctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaat 426  Q
    ||||||||||||||||| ||| | |||||| ||||||| |||  |||| | ||||| | ||||||| |||||| |||||| | || |||||||  |||||    
T  19293446 ctctttaagcactttaattagtaggttttttatgaaaagttggttattgagtgcatcggaaattgtaatagttaactttttaaaataataattgttaaat 19293545  T
Q  427 ttgggttatttaaagagtgt 446  Q
    || || |  |||||||||||    
T  19293546 ttaggatgcttaaagagtgt 19293565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 368 - 422
Target Start/End: Original strand, 34235412 - 34235466
Alignment:
Q  368 gtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattact 422  Q
    |||||||||||| |||||||||||| |||||| | |||| | |||||||||||||    
T  34235412 gtgtattaaatgtattgaaaattgtaatagttaattttttaaaagaataattact 34235466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 358 - 391
Target Start/End: Complemental strand, 12132609 - 12132576
Alignment:
Q  358 atgaaaaattgtgtattaaatgcattgaaaattg 391  Q
    ||||||| ||||||||||||||||||||||||||    
T  12132609 atgaaaatttgtgtattaaatgcattgaaaattg 12132576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 326 - 425
Target Start/End: Complemental strand, 18737877 - 18737777
Alignment:
Q  326 actctttaagcactttaaatagaaagtt-tttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttactttt-aagaagaataattacta 423  Q
    ||||||||| |||||||||| | ||||| ||| || ||||||||| |||| ||||||||||||||||| ||| || | |||| || ||||| ||||||||    
T  18737877 actctttaaacactttaaattgtaagttattttataaaaaattgt-tatttaatgcattgaaaattgtaataattgatttttaaaaaagaagaattacta 18737779  T
Q  424 aa 425  Q
    ||    
T  18737778 aa 18737777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 301 - 424
Target Start/End: Complemental strand, 1204 - 1081
Alignment:
Q  301 aaatgttaacgaatacttccgggatactctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagttt 400  Q
    |||||||||||| | | ||||||||| ||||||| || ||||||||  ||||||||||||||||||| |||||| ||||||||| ||||| | ||||||     
T  1204 aaatgttaacgagtgcctccgggatattctttaaacattttaaataacaagtttttaatgaaaaattttgtattgaatgcattggaaattataatagttg 1105  T
Q  401 acttttaagaagaataattactaa 424  Q
    | |||| | |||||||||||||||    
T  1104 atttttcaaaagaataattactaa 1081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 326 - 426
Target Start/End: Original strand, 103641 - 103741
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaa 425  Q
    |||||||||||| || |||||  || |||||||||||||||||| |||| |||||||| |||||||| ||| |  |||||| | ||||||||||||||||    
T  103641 actctttaagcatttaaaataataaatttttaatgaaaaattgtatattgaatgcattaaaaattgtaatattcgactttttaaaagaataattactaaa 103740  T
Q  426 t 426  Q
    |    
T  103741 t 103741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 326 - 416
Target Start/End: Original strand, 20241 - 20330
Alignment:
Q  326 actctttaagcactttaaatagaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaata 416  Q
    ||||||||||||||||||||   |||||||| ||||||| ||||||||| ||||||||  ||||||| |||||| |||||| | |||||||    
T  20241 actctttaagcactttaaatgataagttttt-atgaaaagttgtgtatttaatgcatttgaaattgtaatagttaactttttaaaagaata 20330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 352 - 426
Target Start/End: Complemental strand, 1496 - 1422
Alignment:
Q  352 tttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaat 426  Q
    ||||||||||||| || |||||||||| || |||||||||| |||||| |||||| | ||||||||||| |||||    
T  1496 tttttaatgaaaagttatgtattaaatacagtgaaaattgtaatagttgactttttaaaagaataattattaaat 1422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 352 - 431
Target Start/End: Original strand, 335866 - 335945
Alignment:
Q  352 tttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaatttggg 431  Q
    ||||||||||||| ||||||||  ||| ||||||||||| | ||| || |||||| | | ||||||||||||||||||||    
T  335866 tttttaatgaaaagttgtgtatcgaatacattgaaaattataataattaacttttgaaatgaataattactaaatttggg 335945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 326 - 399
Target Start/End: Complemental strand, 25193 - 25119
Alignment:
Q  326 actctttaagcactttaaatagaaagttttta-atgaaaaattgtgtattaaatgcattgaaaattgtgatagtt 399  Q
    |||||||||||| ||||||||| ||||||||  || |||||||| ||| | ||||||||||||||||| ||||||    
T  25193 actctttaagcattttaaatagtaagtttttttataaaaaattgagtaatcaatgcattgaaaattgtaatagtt 25119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1444 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold1444
Description:

Target: scaffold1444; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 352 - 428
Target Start/End: Original strand, 950 - 1026
Alignment:
Q  352 tttttaatgaaaaattgtgtattaaatgcattgaaaattgtgatagtttacttttaagaagaataattactaaattt 428  Q
    ||||| |||||||  |||||||| ||| ||||||||||||| |||||| |||||| | ||||| |||| ||||||||    
T  950 ttttttatgaaaagatgtgtattcaatacattgaaaattgtaatagttgactttttaaaagaacaattgctaaattt 1026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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