View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5167-Insertion-3 (Length: 895)
Name: NF5167-Insertion-3
Description: NF5167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5167-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 737; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 737; E-Value: 0
Query Start/End: Original strand, 52 - 878
Target Start/End: Original strand, 44734513 - 44735344
Alignment:
| Q |
52 |
acaaacatcttggaggataatgtcgtccagccactgctcgtaagcacaagtgctatcactatagcaacagattgtgtgcagatgattttgaagattgatg |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44734513 |
acaaacatcttggaggataatgtcgtccagccactgctcgtaagcacaagtgctatcactatagcaacagattgtgtgcagatgattttgaagattgatg |
44734612 |
T |
|
| Q |
152 |
tgtgaggtaggtttaatggcaggaattttgttaactaattatcttattactttctgacttgggtgataatttgatcaagaatttgtagtatgaggcattg |
251 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44734613 |
tgtgaggtaggtttaatggcaggaattttgttaactaattatcttattactttctgacttgggtgataatttgatcaagaatttgtagtatgaggcattg |
44734712 |
T |
|
| Q |
252 |
aacttgaaagctaactttgtagtgtaagttttattttatagcaactgctaagttgtatagcattgaccgacagttttttattcttatgcccttagaacaa |
351 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44734713 |
aacttgaaagctaactttgtagtataagttttattttatagcaactgctaagttgtatagcattgaccgacagttttttattcttatgcccttagaacaa |
44734812 |
T |
|
| Q |
352 |
gtatacctctataattttagaacaagtatttctaccaaattttttaatgatttgaaaattaaattacttacatgattcttctgatcctaatatttgg-tt |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
44734813 |
gtatacctctataattttagaacaagtatttcttccaaattttttaatgatttgaaaattaaattacttatatgattcttctgatcctaatatttggttt |
44734912 |
T |
|
| Q |
451 |
attgatggacaagaaatgatccccaaagccaaatatgtgttgggtttcaatggtcaccaaacaattccagatatttctcagaggcattaatttgttgata |
550 |
Q |
| |
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|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44734913 |
attgatggacaatacatgatccccaaagccaaatatgtgttgggtttcaatggtcaccaaacaattccagatatttctcagaggcattaatttgttgatc |
44735012 |
T |
|
| Q |
551 |
catatatggtaccattttaatgaaataataataactcctaatgtgctcatgattttctccattaaaattcattccattcatcatcaatgctaacaaaata |
650 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
44735013 |
catatatggtactattttaatgaaataataataactcctaatgtgctcatgattttctccattaaaattcattccattcatcatcaatgccaacaaaata |
44735112 |
T |
|
| Q |
651 |
tatgcactg----nnnnnnnnnnggtacatatgaattattagtgatatgtgcagaatgattaccttgtaccatttgacctcttgagtgattatcgcctaa |
746 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44735113 |
tatgcactgttttttttttttttggtacatatgaattattagtgatatgtgcagaatgattaccttgtaccatttgacctcttgagtgattatcgccgaa |
44735212 |
T |
|
| Q |
747 |
tgttgagaaagggaatatgggctctcctaagatatagtagtttccaaaaccaacaaggcagtaactatagcaataattcttgatttgttgggaatcaaat |
846 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
44735213 |
tgttgagaaagggaatatgggctctcctaagatatagtagtttccaaaaccaacaaggcagtaactatagcaataattcttgatttgttgggaattaaat |
44735312 |
T |
|
| Q |
847 |
tgacatcaaataaggagtagatgtgccttcta |
878 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
44735313 |
tgacatcaaataaggagtagatgtgccttcta |
44735344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 44731737 - 44731784
Alignment:
| Q |
10 |
ggtgagataaatgctggaatcaatgtgaggaaaggtcaaattacaaac |
57 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||| |
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|
| T |
44731737 |
ggtgagataaatgctggaatcgatgtgaggaaaggtcaatttacaaac |
44731784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 1e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 199 - 365
Target Start/End: Original strand, 41752796 - 41752958
Alignment:
| Q |
199 |
tactttctgacttgggtgataatttgatcaagaatttgtagtatgaggcattgaacttgaaagctaactttgtagtgtaagttttattttatagcaactg |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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|
| T |
41752796 |
tactttctgacttgggtgataatttgatcaagaatttgtagtatgaggcattgaacttgaaagctaactttgtagtataagtttaattttatagcaacta |
41752895 |
T |
|
| Q |
299 |
ctaagttgtatagcattgaccgacagttttttattcttatgcccttagaacaagtatacctctataa |
365 |
Q |
| |
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||||||| ||||||||| |||| |||||||||||||||| ||||||||| ||||||||||||| |
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| T |
41752896 |
ctaagttttatagcatt----gacaattttttattcttatgcatttagaacaaatatacctctataa |
41752958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 362 - 408
Target Start/End: Original strand, 41753013 - 41753059
Alignment:
| Q |
362 |
ataattttagaacaagtatttctaccaaattttttaatgatttgaaa |
408 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||| |
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|
| T |
41753013 |
ataattttagaacaagtatttcttccaaaaaatttaatgatttgaaa |
41753059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 9e-57; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 199 - 356
Target Start/End: Complemental strand, 34224922 - 34224769
Alignment:
| Q |
199 |
tactttctgacttgggtgataatttgatcaagaatttgtagtatgaggcattgaacttgaaagctaactttgtagtgtaagttttattttatagcaactg |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
34224922 |
tactttctgacttgggtgataatttgatcaagaatttgtggtatgaggcattgaacttgaaagctatctttgtagtataagttttattttatagcaactg |
34224823 |
T |
|
| Q |
299 |
ctaagttgtatagcattgaccgacagttttttattcttatgcccttagaacaagtata |
356 |
Q |
| |
|
|||||||||||| |||| |||| ||||||||||| ||||||||||||||||||| |
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|
| T |
34224822 |
ctaagttgtataacatt----gacaattttttattctcgtgcccttagaacaagtata |
34224769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 199 - 273
Target Start/End: Complemental strand, 34229050 - 34228976
Alignment:
| Q |
199 |
tactttctgacttgggtgataatttgatcaagaatttgtagtatgaggcattgaacttgaaagctaactttgtag |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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|
| T |
34229050 |
tactttctgacttgggtgataatttgatcaagaatttgtggtatgaggcattgaacttgaaagctatctttgtag |
34228976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 362 - 464
Target Start/End: Complemental strand, 34224703 - 34224598
Alignment:
| Q |
362 |
ataattttagaacaagtatttctaccaaattttttaatgatttgaaaattaaattacttacatgattcttctgatccta--atatttgg-ttattgatgg |
458 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||| ||||||| |||| |||||| ||||||||||| |||||| |||||||| |||||||||| |
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| T |
34224703 |
ataattttagaacaagtatttcttccaatttttttaatgacttgaaaagtaaactacttatatgattcttcttatcctaatatatttggtttattgatgg |
34224604 |
T |
|
| Q |
459 |
acaaga |
464 |
Q |
| |
|
|||||| |
|
|
| T |
34224603 |
acaaga |
34224598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 10 - 151
Target Start/End: Original strand, 50702276 - 50702417
Alignment:
| Q |
10 |
ggtgagataaatgctggaatcaatgtgaggaaaggtcaaattacaaacatcttggaggataatgtcgtccagccactgctcgtaagcacaagtgctatca |
109 |
Q |
| |
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|||||||| ||| ||||||||||||| |||||||||||||||||||||||| | ||||| ||||| || |||||| |||| || ||||||||||| |||| |
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| T |
50702276 |
ggtgagatcaatactggaatcaatgtcaggaaaggtcaaattacaaacatccttgaggagaatgtggtgcagccattgctggttagcacaagtgccatca |
50702375 |
T |
|
| Q |
110 |
ctatagcaacagattgtgtgcagatgattttgaagattgatg |
151 |
Q |
| |
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| | || ||||| |||||| ||||||||||||||||||| |
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|
| T |
50702376 |
ccttggccacagagtgtgtgagaatgattttgaagattgatg |
50702417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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