View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5167-Insertion-4 (Length: 528)

Name: NF5167-Insertion-4
Description: NF5167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5167-Insertion-4
NF5167-Insertion-4
[»] chr2 (8 HSPs)
chr2 (106-331)||(20154847-20155074)
chr2 (377-528)||(20154660-20154810)
chr2 (33-111)||(20155134-20155212)
chr2 (248-315)||(20144164-20144231)
chr2 (347-425)||(20144017-20144094)
chr2 (316-350)||(20154792-20154826)
chr2 (113-149)||(20169375-20169411)
chr2 (113-149)||(20358875-20358911)
[»] chr4 (4 HSPs)
chr4 (248-315)||(28286895-28286963)
chr4 (347-454)||(28287035-28287140)
chr4 (121-156)||(35155172-35155207)
chr4 (114-152)||(28286749-28286787)
[»] chr3 (1 HSPs)
chr3 (114-152)||(46526765-46526803)


Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 106 - 331
Target Start/End: Complemental strand, 20155074 - 20154847
Alignment:
Q  106 aatattagaaggttgttgaagtgaccaaagaagtgaatttatgggctaaaagggagcatttgataattggtaacaatatcacttctttggtatgcgaa-- 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||      
T  20155074 aatattagaaggttgttgaagtgaccaaagaagtgaatttatgggccaaaaaggagcatttgataattggtaacaatatcacttctttggtatgcaaaaa 20154975  T
Q  204 tatggtaaagctttttcgtcacttcataaaagttgatacttgaagctaaaggagtagaatttatttctctttagtactataaaatttgaagaggcatttg 303  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20154974 tatggtaaagctttttggtcacttcataaaagttgatacttgaagctaaaggagtaaaatttatttctctttagtactataaaatttgaagaggcatttg 20154875  T
Q  304 aataaaaaaggtttgtgccatacatggg 331  Q
    ||||||||||||||||||||||||||||    
T  20154874 aataaaaaaggtttgtgccatacatggg 20154847  T

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Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 377 - 528
Target Start/End: Complemental strand, 20154810 - 20154660
Alignment:
Q  377 tattcactacagctttcaattgaaatatatgaaaaaacattataactattaacttactttgtgctaaaataaacaatannnnnnnattaaaaggaggaaa 476  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  20154810 tattcactacagctttcaattgaaatatatggaaaaacattataactattaacttactttgtgctaaaataaacaata-ttttttattaaaaggaggaaa 20154712  T
Q  477 caacgtcgatctatctttaggtcacttgatatttagaagcattggtctcaac 528  Q
    | |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20154711 cgacgtcgatctatctttaggttacttgatatttagaagcattggtctcaac 20154660  T

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Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 20155212 - 20155134
Alignment:
Q  33 tctagtatgtgtctgtagacacacgtaattgcatctttttatctcctagttaattaatgaacttggtaaatcaaatatt 111  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  20155212 tctagtatatgtatgtagacacacgtaattgcatctttttatctcctagttaattaatgaacttgttaaatcaaatatt 20155134  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 248 - 315
Target Start/End: Complemental strand, 20144231 - 20144164
Alignment:
Q  248 gctaaaggagtagaatttatttctctttagtactataaaatttgaagaggcatttgaataaaaaaggt 315  Q
    ||||||||| || | ||||||||||||||||||| ||||||||||||||  |||||||||||||||||    
T  20144231 gctaaaggattaaagtttatttctctttagtactgtaaaatttgaagagatatttgaataaaaaaggt 20144164  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 347 - 425
Target Start/End: Complemental strand, 20144094 - 20144017
Alignment:
Q  347 tcaaaatataaatcaattcatgcctccaaatattcactacagctttcaattgaaatatatgaaaaaacattataactat 425  Q
    |||||||||||| |||||||| ||||||||||| || |||| ||||||||| ||||| |||  ||||||||||||||||    
T  20144094 tcaaaatataaaccaattcatacctccaaatatacaatacaactttcaattcaaataaatg-caaaacattataactat 20144017  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 350
Target Start/End: Complemental strand, 20154826 - 20154792
Alignment:
Q  316 ttgtgccatacatgggtattcactacagctttcaa 350  Q
    ||||||||| |||||||||||||||||||||||||    
T  20154826 ttgtgccatgcatgggtattcactacagctttcaa 20154792  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 20169411 - 20169375
Alignment:
Q  113 gaaggttgttgaagtgaccaaagaagtgaatttatgg 149  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  20169411 gaaggttgttgaagtgacaaaaaaagtgaatttatgg 20169375  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 20358875 - 20358911
Alignment:
Q  113 gaaggttgttgaagtgaccaaagaagtgaatttatgg 149  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  20358875 gaaggttgttgaagtgacaaaaaaagtgaatttatgg 20358911  T

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Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 248 - 315
Target Start/End: Original strand, 28286895 - 28286963
Alignment:
Q  248 gctaaaggagtagaatttatttctctttagtactat-aaaatttgaagaggcatttgaataaaaaaggt 315  Q
    ||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28286895 gctaaaggattaaaatttatttctctttagtactataaaaatttgaagaggcatttgaataaaaaaggt 28286963  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 347 - 454
Target Start/End: Original strand, 28287035 - 28287140
Alignment:
Q  347 tcaaaatataaatcaattcatgcctccaaatattcactacagctttcaattgaaatatatgaaaaaacattataactattaacttactttgtgctaaaat 446  Q
    |||||||||||| |||||||| ||||||||||| |  |||||||||||||| ||||| || ||||||||  |||||||||||| | ||||||||| |||     
T  28287035 tcaaaatataaaccaattcatacctccaaatatgc--tacagctttcaattcaaataaattaaaaaacaacataactattaaccttctttgtgctgaaac 28287132  T
Q  447 aaacaata 454  Q
    ||||||||    
T  28287133 aaacaata 28287140  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 156
Target Start/End: Original strand, 35155172 - 35155207
Alignment:
Q  121 ttgaagtgaccaaagaagtgaatttatgggctaaaa 156  Q
    |||||||||| |||||||||||||||||||||||||    
T  35155172 ttgaagtgactaaagaagtgaatttatgggctaaaa 35155207  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 114 - 152
Target Start/End: Complemental strand, 28286787 - 28286749
Alignment:
Q  114 aaggttgttgaagtgaccaaagaagtgaatttatgggct 152  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  28286787 aaggttgttgaagtgacaaaagaagtaaatttatgggct 28286749  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 114 - 152
Target Start/End: Complemental strand, 46526803 - 46526765
Alignment:
Q  114 aaggttgttgaagtgaccaaagaagtgaatttatgggct 152  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  46526803 aaggttgttgaagtgattaaagaagtgaatttatgggct 46526765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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