View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5167-Insertion-7 (Length: 218)
Name: NF5167-Insertion-7
Description: NF5167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5167-Insertion-7 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0069 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 218
Target Start/End: Complemental strand, 10648114 - 10647904
Alignment:
| Q |
8 |
tatatgcctgttgtggaactcctgagtgacttgtgttgatccctcgatgtcaatttcaaaagttgagcaaccttgactagtcacccaacaatattttact |
107 |
Q |
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| T |
10648114 |
tatatgcctgttgtggaactcctgagtgacttgtgttgatccctcgatgtcaattttgaaagttgagcaaccttgactagtcacccaacaatattttact |
10648015 |
T |
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| Q |
108 |
agtgaaagtgtgaaacaccgaagttaactagtgaggtgttacttcaatagagacgttgcacatgtactcctggtttactatataaagttagtaatatagt |
207 |
Q |
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| T |
10648014 |
agtgaatgtgtgaaacaccgaagttaactagtgaggtgttacttcaatagagacgttgcacatgtactcctagtttactatataaagttagtaatatggt |
10647915 |
T |
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| Q |
208 |
atgacattcag |
218 |
Q |
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| T |
10647914 |
atgacattcag |
10647904 |
T |
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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 81 - 187
Target Start/End: Original strand, 12178890 - 12178996
Alignment:
| Q |
81 |
tgactagtcacccaacaatattttactagtgaaagtgtgaaacaccgaagttaactagtgaggtgttacttcaatagagacgttgcacatgtactcctgg |
180 |
Q |
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| T |
12178890 |
tgactagtcacctgacaatattttactagtgagagtgtaaagcatcgaagttaaccagtgaggtgttgcttcaatagagacgctgaacatgtactcctag |
12178989 |
T |
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| Q |
181 |
tttacta |
187 |
Q |
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| T |
12178990 |
tctacta |
12178996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 95 - 188
Target Start/End: Original strand, 8680692 - 8680785
Alignment:
| Q |
95 |
acaatattttactagtgaaagtgtgaaacaccgaagttaactagtgaggtgttacttcaatagagacgttgcacatgtactcctggtttactat |
188 |
Q |
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| T |
8680692 |
acaatattttactagtgagagtgtcaagcaccgaagtaaactagtatggtgttccttcaacaaagacgttggacatgtactcctggtatactat |
8680785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 81 - 198
Target Start/End: Original strand, 8471 - 8588
Alignment:
| Q |
81 |
tgactagtcacccaacaatattttactagtgaaagtgtgaaacaccgaagttaactagtgaggtgttacttcaatagagacgttgcacatgtactcctgg |
180 |
Q |
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| T |
8471 |
tgactaatcacctgacaatattttactagtgagaatgtaaagcatcgaagtcaactagtgaggtgttgcttcaatagagacgctgaacatgtactcctag |
8570 |
T |
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| Q |
181 |
tttactatataaagttag |
198 |
Q |
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| T |
8571 |
tctactatctagagttag |
8588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 198
Target Start/End: Complemental strand, 10301226 - 10301128
Alignment:
| Q |
100 |
attttactagtgaaagtgtgaaacaccgaagttaactagtgaggtgttacttcaatagagacgttgcacatgtactcctggtttactatataaagttag |
198 |
Q |
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| T |
10301226 |
attttactaatgaaagtgtgaagcaccgaagtcaacccgtgagatgttgcttcaaaagagatgctaaacatgtattcctagtctactatctagagttag |
10301128 |
T |
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