View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5167_low_2 (Length: 526)
Name: NF5167_low_2
Description: NF5167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5167_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 291
Target Start/End: Original strand, 26968860 - 26969134
Alignment:
| Q |
17 |
caagtttcctctccaaatcctttacgtccataatttccactttccattttcctccctgcttctttatctgcttcactcaacatttcctgcattatccatg |
116 |
Q |
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| T |
26968860 |
caagtttcctctccaaatcctttacgtccataatttccactttccattttcctccctgcttctttatctgcttcactcaacatttcctgcattatccatg |
26968959 |
T |
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| Q |
117 |
ccaaaattccacaaccactgatcaataaatatctcaaacatcaaaaacatatactaccataaattcaaatttgttaccttggtcttgtcttttgcctcta |
216 |
Q |
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| T |
26968960 |
caaaaattccacaaccactaatcaataaatatctcaaacatcaaaaacatatactaccataaattcaaatttgttaccttggtcttgtcttttgcctcta |
26969059 |
T |
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| Q |
217 |
ctgtcttttgcttagcagcctcagtggtttctgcagttttctgtttagcagcttccgctgtctctgcagttttct |
291 |
Q |
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| T |
26969060 |
ctgtcttttgtttagcagcttctgctgtctctgcagttttctgtttagcagcttctgctgtctctgcagttttct |
26969134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 246 - 475
Target Start/End: Original strand, 26969122 - 26969351
Alignment:
| Q |
246 |
tctgcagttttctgtttagcagcttccgctgtctctgcagttttctccttagcttcctctttcttgtcacccaagtaacccatagcccgtttcgccgcat |
345 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26969122 |
tctgcagttttctgtttagcagcttctgctgtctctgcagttttctgtttagcttcctctttcttgtcacccaagtaacccatagcccgtttcgccgcat |
26969221 |
T |
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| Q |
346 |
caacagcagagtctttcatctcaccaatcttccatgctgtattatccttcccttccttcgccttctcagctgtataatccttatactcacccatcttatt |
445 |
Q |
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| T |
26969222 |
caacagcagagtccttcatctcaccaatcttccacgctgtattatccttcccttccttcgccttctcagctgtataatccttatactcacccatcttatt |
26969321 |
T |
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| Q |
446 |
catggtagcatcttttccttcctttgcctt |
475 |
Q |
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|||||| |||||||| ||||| || ||||| |
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| T |
26969322 |
catggtggcatctttcccttctttcgcctt |
26969351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 393 - 520
Target Start/End: Original strand, 26969335 - 26969462
Alignment:
| Q |
393 |
ttcccttccttcgccttctcagctgtataatccttatactcacccatcttattcatggtagcatcttttccttcctttgccttttccgcagcatagtctt |
492 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26969335 |
ttcccttctttcgccttctcagccgtataatccttatactcacccatcttattcatggtagcatcttttccttcctttgccttttccgcagcatagtctt |
26969434 |
T |
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| Q |
493 |
tgtactccccagctttgtcctttgcttc |
520 |
Q |
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|||||||||||||||||||||| ||||| |
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| T |
26969435 |
tgtactccccagctttgtccttggcttc |
26969462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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