View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5167_low_3 (Length: 355)
Name: NF5167_low_3
Description: NF5167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5167_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 22 - 344
Target Start/End: Complemental strand, 34888909 - 34888571
Alignment:
| Q |
22 |
cgctaaccattcaaaaagaaagttgttgaattttgttgtcacaaattcatattctaataacatttttgttttaaaaaccctggttatataagaagttgac |
121 |
Q |
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| T |
34888909 |
cgctaaccattcaaaaagaaagttgttgaattttgttgtcacaaattcatattctaataacatttttgttttaaaaaccctggttatataagaggttgac |
34888810 |
T |
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| Q |
122 |
tagttgggaagatatcaatgattaagaaa-ctgggtgtctaatttgatgtgtttctttttgtgcatatt---------------tttctttccttgcaga |
205 |
Q |
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| T |
34888809 |
tagtttgaaagatatcaatgattaagaaatctgggtgtctaatttgatgtgtttctttttgtgcatattgtcatatatctaatttttctttccttgcaga |
34888710 |
T |
|
| Q |
206 |
tgtctgagttgctgaatcaaaagtcagctgtacaaggaaaaattccttctggctattttaatgctctttttgatatgagtggtgattggcttcgtgatgc |
305 |
Q |
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| T |
34888709 |
tgtctgagttgctgaatcaaaagtcagctgtacaaggaaaaattccttctggctattttaatgctctttttgatatgagtggtgattggcttcgtgatgc |
34888610 |
T |
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| Q |
306 |
tgctgacatcaaatatcttgcttttgatggttatttcat |
344 |
Q |
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| T |
34888609 |
tgctgacatcaaatatcttgcttttgatggttatttcat |
34888571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 35483198 - 35483142
Alignment:
| Q |
42 |
agttgttgaattttgttgtcacaaattcatattctaataacattttt-gttttaaaa |
97 |
Q |
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| T |
35483198 |
agttgttgaattttgttgtcccaaatagatgttcaaataacatttttggttttaaaa |
35483142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 198 - 344
Target Start/End: Original strand, 38365813 - 38365959
Alignment:
| Q |
198 |
cttgcagatgtctgagttgctgaatcaaaagtcagctgtacaaggaaaaattccttctggctattttaatgctctttttgatatgagtggtgattggctt |
297 |
Q |
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||||||||||||||| ||||||| || || ||||| |||||||||||||||||||||| |||||||||||| | |||||| | |||||||||||| || |
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| T |
38365813 |
cttgcagatgtctgaaatgctgaaccagaaatcagccatacaaggaaaaattccttctggatattttaatgctgtatttgatctaagtggtgattggttt |
38365912 |
T |
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| Q |
298 |
cgtgatgctgctgacatcaaatatcttgcttttgatggttatttcat |
344 |
Q |
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| T |
38365913 |
cgtgatgctcaagacatcaaatctcttgcttttgatggttacttcat |
38365959 |
T |
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