View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5167_low_5 (Length: 299)
Name: NF5167_low_5
Description: NF5167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5167_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 51109280 - 51108997
Alignment:
| Q |
1 |
cggttaattcaaccgttgaggttatgtcatttctgcatcgaatcggaaactttatgctgaataccgagaggacatttcaatttcgcagatgttacactca |
100 |
Q |
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| T |
51109280 |
cggttaattcaaccgttgaggttatgtcatttctgcatcgaatctgaaactttaggctgaataccgagaggacatttcaatttcgcagatgttacactca |
51109181 |
T |
|
| Q |
101 |
cctgcttcatgcttctttctcaaattctattcccaaacctaaaactctccctactgttatgccatattcgcattcgcttttccataatactagacccata |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51109180 |
cctgcttcatgcttctttctcaaattctattcccgaacctaaaactctccctactgttatgccatattcgcattcgcttttccataatactagacccata |
51109081 |
T |
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| Q |
201 |
aatgtttctccaattgttttaaacagcgtgaggtgttatgctgcacccgttcaggtaatttacaaacttctagtagttgtaact |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51109080 |
aatgtttctccaattgttttaaacagcgtgaggtgttatgctgcacccgttcaggtaatttacaaacttctagtagttgtaact |
51108997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 125 - 210
Target Start/End: Complemental strand, 51116719 - 51116634
Alignment:
| Q |
125 |
ttctattcccaaacctaaaactctccctactgttatgccatattcgcattcgcttttccataatactagacccataaatgtttctc |
210 |
Q |
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||||| |||||| ||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
51116719 |
ttctactcccaagcctaaaactctccctacggttatgccatattcacattcgcttttccatagtactagacccataaatgtttctc |
51116634 |
T |
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