View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5167_low_6 (Length: 247)
Name: NF5167_low_6
Description: NF5167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5167_low_6 |
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| [»] scaffold0386 (1 HSPs) |
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Alignment Details
Target: scaffold0386 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: scaffold0386
Description:
Target: scaffold0386; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 977 - 771
Alignment:
| Q |
1 |
cttgaaatgttgaaattttctcttccatgagttgagatatggtggctgaatgnnnnnnnaaggttgatgaacatgttcctagattttcacaaacactatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
977 |
cttgaaatgttgaaattttctcttccatgagttgagatatggtggctgaatgtttttttaaggttgatgaacatgttcctagattttcacaaacactatt |
878 |
T |
|
| Q |
101 |
aaagaaatataaaacaagaacatagattcagtttatgagcgattcaaaataagacatgatctataccaagttgcaaaaggatgacaatggttctatttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| |
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|
| T |
877 |
aaagaaatataaaacaagaacatagattcagtttatgagcgattcaaaataagacatgatctataccacgttgcaaaaggatgacgatggttctgtttct |
778 |
T |
|
| Q |
201 |
attttca |
207 |
Q |
| |
|
||||||| |
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|
| T |
777 |
attttca |
771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 33878976 - 33879182
Alignment:
| Q |
1 |
cttgaaatgttgaaattttctcttccatgagttgagatatggtggctgaatgnnnnnnnaaggttgatgaacatgttcctagattttcacaaacactatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33878976 |
cttgaaatgttgaaattttctcttccatgagttgagatatggtggctgaatgtttttttaaggttgatgaacatgttcctagattttcacaaacactatt |
33879075 |
T |
|
| Q |
101 |
aaagaaatataaaacaagaacatagattcagtttatgagcgattcaaaataagacatgatctataccaagttgcaaaaggatgacaatggttctatttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| |
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| T |
33879076 |
aaagaaatataaaacaagaacatagattcagtttatgagcgattcaaaataagacatgatctataccacgttgcaaaaggatgacgatggttctgtttct |
33879175 |
T |
|
| Q |
201 |
attttca |
207 |
Q |
| |
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||||||| |
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| T |
33879176 |
attttca |
33879182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 29735396 - 29735198
Alignment:
| Q |
9 |
gttgaaattttctcttccatgagttgagatatggtggctgaatgnnnnnnnaaggttgatgaacatgttcctagattttcacaaacactattaaagaaat |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
29735396 |
gttgaaattttctcttccatgagttgagatatggtggctgaatgtttttttaaggttgatgaacatgttcctagattttcataaacactattagagaaat |
29735297 |
T |
|
| Q |
109 |
ataaaacaagaacatagattcagtttatgagcgattcaaaataagacatgatctataccaagttgcaaaaggatgacaatggttctatttctattttca |
207 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||| |||||||| |||||||||||| |
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| T |
29735296 |
attaaacaagaacatagattcagtttatgagcgattcaaaataagacatgatctataccacgatgcaaaagaatgacgatggttctgtttctattttca |
29735198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 27641192 - 27641398
Alignment:
| Q |
1 |
cttgaaatgttgaaattttctcttccatgagttgagatatggtggctgaatgnnnnnnnaaggttgatgaacatgttcctagattttcacaaacactatt |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||| |||||||| | |
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| T |
27641192 |
cttgaaaggttgaaattttctcttccatgagttgacatatggtgggtgaatgtttttttaaggttgatgaacatgttcctagattttcagaaacactaat |
27641291 |
T |
|
| Q |
101 |
aaagaaatataaaacaagaacatagattcagtttatgagcgattcaaaataagacatgatctataccaagttgcaaaaggatgacaatggttctatttct |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||| ||||| |
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| T |
27641292 |
agagaaatataaaacaagaacatagattcagtttatgagcgattcaaaataagacatgatctataccacgatgcaaaaggatgacgatggttctgtttct |
27641391 |
T |
|
| Q |
201 |
attttca |
207 |
Q |
| |
|
||||||| |
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|
| T |
27641392 |
attttca |
27641398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 13869596 - 13869795
Alignment:
| Q |
1 |
cttgaaatgttgaaattttctcttccatgagttgagatatggtggctgaatgnnnnnnnaaggttgatgaacatgttcctagattttcacaaacactatt |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| | |
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| T |
13869596 |
cttgaaaggttgaaattttctcttccatgagttgagatatggtggctgaatgtttttttaaggtt-------atgttcctagattttcagaaacactaat |
13869688 |
T |
|
| Q |
101 |
aaagaaatataaaacaagaacatagattcagtttatgagcgattcaaaataagacatgatctataccaagttgcaaaaggatgacaatggttctatttct |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||| ||||| |
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| T |
13869689 |
agagaaatataaaacaagaacatagattcagtttatgagcgattcaaaataagacatgatctataccacgatgcaaaaggatgacgatggttctgtttct |
13869788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 49851115 - 49850914
Alignment:
| Q |
9 |
gttgaaattttctcttccatgagttgagatatggtggctgaatgnnnnnnnaaggttgat---gaacatgttcctagattttcacaaacactattaaaga |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||| ||||||||| ||||||||||||||||||||| ||| ||||||| ||| |
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|
| T |
49851115 |
gttgaaattttctcttccatgagttgagatatgatggccgaatgtttttttaaggttgatattgaacatgttcctagattttcagaaatactattagaga |
49851016 |
T |
|
| Q |
106 |
aatataaaacaagaacatagattcagtttatgagcgattcaaaataagacatgatctataccaagttgcaaaaggatgacaatggttctatttctatttt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||| | |||||||||| |
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|
| T |
49851015 |
aatataaaacaagaacatagattcagtttatgagcgattcaaaataagacatgatctataccacgatgcaaaaggatgacgatggttatgtttctatttt |
49850916 |
T |
|
| Q |
206 |
ca |
207 |
Q |
| |
|
|| |
|
|
| T |
49850915 |
ca |
49850914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 104 - 207
Target Start/End: Original strand, 38460745 - 38460848
Alignment:
| Q |
104 |
gaaatataaaacaagaacatagattcagtttatgagcgattcaaaataagacatgatctataccaagttgcaaaaggatgacaatggttctatttctatt |
203 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||| |
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| T |
38460745 |
gaaatataaaacaagaacatagatttagtttatgagcgattcaaaataagacatgatctataccacgttgcaaaaggatgacgatggttctgtttctatt |
38460844 |
T |
|
| Q |
204 |
ttca |
207 |
Q |
| |
|
|||| |
|
|
| T |
38460845 |
ttca |
38460848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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