View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5167_low_7 (Length: 234)
Name: NF5167_low_7
Description: NF5167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5167_low_7 |
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| [»] scaffold0386 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: scaffold0386 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0386
Description:
Target: scaffold0386; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 1229 - 1008
Alignment:
| Q |
13 |
ttctttctcttctctttgcttaaacctgtggaataattctaaaaactccaaacttctcttgttgtttaaattgtgaagatggttatggctcatcgactac |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1229 |
ttctttctcttctctttgcttaaacctgtggaataattctagaaactccaaacttctcttgttgtttaaattgtgaagatggttatggctcatcgactac |
1130 |
T |
|
| Q |
113 |
tcattgcaacaccataattaacggatccaaatcatgcagagattgtttctaaaccatgctgtattgggtgttattgcaatccaatcgagcaatgggtcaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1129 |
tcattgcaacaccataattaacggatccaaatcatgcagagattgtttctaaaccatgctgtattgggtgttattgcaatccaatcgagcaatgggtcaa |
1030 |
T |
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| Q |
213 |
attatattaaaatagttagttt |
234 |
Q |
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|||||||||||||||||||||| |
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| T |
1029 |
attatattaaaatagttagttt |
1008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 33878724 - 33878945
Alignment:
| Q |
13 |
ttctttctcttctctttgcttaaacctgtggaataattctaaaaactccaaacttctcttgttgtttaaattgtgaagatggttatggctcatcgactac |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33878724 |
ttctttctcttctctttgcttaaacctgtggaataattctagaaactccaaacttctcttgttgtttaaattgtgaagatggttatggctcatcgactac |
33878823 |
T |
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| Q |
113 |
tcattgcaacaccataattaacggatccaaatcatgcagagattgtttctaaaccatgctgtattgggtgttattgcaatccaatcgagcaatgggtcaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33878824 |
tcattgcaacaccataattaacggatccaaatcatgcggagattgtttctaaaccatgctgtattgggtgttattgcaatccaatcgagcaatgggtcaa |
33878923 |
T |
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| Q |
213 |
attatattaaaatagttagttt |
234 |
Q |
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|||||||||||||||||||||| |
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| T |
33878924 |
attatattaaaatagttagttt |
33878945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 120
Target Start/End: Original strand, 46673679 - 46673718
Alignment:
| Q |
81 |
aattgtgaagatggttatggctcatcgactactcattgca |
120 |
Q |
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||||||||||||||||||| |||||| ||||||||||||| |
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| T |
46673679 |
aattgtgaagatggttatgactcatccactactcattgca |
46673718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 13869344 - 13869565
Alignment:
| Q |
13 |
ttctttctcttctctttgcttaaacctgtggaataattctaaaaactccaaacttctcttgttgtttaaattgtgaagatggttatggctcatcgactac |
112 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||| |||||| ||| | |
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| T |
13869344 |
ttctttctcttctctttgcttaaaccggtggaataattctagaaacgccaaacttctcttgttgtttaaattatgaagatggttatgtctcatccactgc |
13869443 |
T |
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| Q |
113 |
tcattgcaacaccataattaacggatccaaatcatgcagagattgtttctaaaccatgctgtattgggtgttattgcaatccaatcgagcaatgggtcaa |
212 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13869444 |
tcattgtaacaccataattaacggatccaaatcatgtagagattgtttctaaatcatgctgtattgggtgttattgcaatccaatcgagcaatgggtcaa |
13869543 |
T |
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| Q |
213 |
attatattaaaatagttagttt |
234 |
Q |
| |
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||| |||||||||||||||||| |
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| T |
13869544 |
attctattaaaatagttagttt |
13869565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 13 - 164
Target Start/End: Original strand, 27640978 - 27641129
Alignment:
| Q |
13 |
ttctttctcttctctttgcttaaacctgtggaataattctaaaaactccaaacttctcttgttgtttaaattgtgaagatggttatggctcatcgactac |
112 |
Q |
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|
||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||| |||||| ||| | |
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| T |
27640978 |
ttctttctcttctctttgcttaaactggtggaataattctagaaacgccaaacttctcttgttgtttaaattatgaagatggttatgtctcatccactgc |
27641077 |
T |
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| Q |
113 |
tcattgcaacaccataattaacggatccaaatcatgcagagattgtttctaa |
164 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27641078 |
tcattgtaacaccataattaacggatccaaatcatgtagagattgtttctaa |
27641129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 29735656 - 29735441
Alignment:
| Q |
13 |
ttctttctcttctctttgcttaaacctgtggaataattctaaaaactccaaacttctcttgttgtttaaattgtgaagatggttatggctcatcgactac |
112 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||| |||||| |
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| T |
29735656 |
ttctttctcttctctttgcttaaaccggtggaataattctaaaaatgccaaattcctcttgttgtttaaattgtgaagatggttatgtctcatc------ |
29735563 |
T |
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| Q |
113 |
tcattgcaacaccataattaacggatccaaatcatgcagagattgtttctaaaccatgctgtattgggtgttattgcaatccaatcgagcaatgggtcaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
29735562 |
tcattgcaacaccataattaacggatccaaatcatgtagagattgtttctaaaccatactgtattgggtgttattgcaatccaatcgagcaatgggttaa |
29735463 |
T |
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| Q |
213 |
attatattaaaatagttagttt |
234 |
Q |
| |
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||| |||||||||||||||||| |
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| T |
29735462 |
attctattaaaatagttagttt |
29735441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 8720808 - 8720845
Alignment:
| Q |
81 |
aattgtgaagatggttatggctcatcgactactcattg |
118 |
Q |
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||||||||||||||||||| |||||| ||||||||||| |
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| T |
8720808 |
aattgtgaagatggttatgtctcatccactactcattg |
8720845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 38460531 - 38460702
Alignment:
| Q |
13 |
ttctttctcttctctttgcttaaacctgtggaataattctaaaaactccaaacttctcttgttgtttaaattgtgaagatggttatggctcatcgactac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| |||||| ||| | |
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| T |
38460531 |
ttctttctcttctctttgcttaaacctgtggaataagtctagaaactccaaatatctcttgttgtttaaattgtgaagatggttatgtctcatccactgc |
38460630 |
T |
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| Q |
113 |
tcattgcaacaccataattaacggatccaaatcatgcagagattgtttctaaaccatgctgtattgggtgtt |
184 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38460631 |
tcattgcaacaccataattaacggatccaaatcatgcagagattgtttctaaaccatgttgtattgggtgtt |
38460702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 120
Target Start/End: Complemental strand, 44428158 - 44428119
Alignment:
| Q |
81 |
aattgtgaagatggttatggctcatcgactactcattgca |
120 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||| |
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| T |
44428158 |
aattgtgaagatggttatgtctcatccactactcattgca |
44428119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 49851364 - 49851154
Alignment:
| Q |
13 |
ttctttctcttctctttgcttaaacctgtggaataattctaaaaactccaaacttctcttgttgtttaaattgtgaagatggttatggctcatcgactac |
112 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||| |||||| ||| | |
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| T |
49851364 |
ttctttcttttctctttgcttaaactggtggaataattctagaaacgccaaacttcccttgttgtttaaattgtgaagatggttatgtctcatccactgc |
49851265 |
T |
|
| Q |
113 |
tcattgcaacaccataattaacggatccaaatcatgcagagattgtttctaaaccatgctgtattgggtg---ttattgcaatccaatcgagcaatgggt |
209 |
Q |
| |
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| |||| |||||||||||| ||| |||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
49851264 |
ttattgtaacaccataatt--------------atgtagagattgtttctaaatcatgctgtattgggtgttattattgcaatccaattgagcaatgggt |
49851179 |
T |
|
| Q |
210 |
caaattatattaaaatagttagttt |
234 |
Q |
| |
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|||||| |||||||||||||||||| |
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|
| T |
49851178 |
caaattctattaaaatagttagttt |
49851154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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