View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5168-Insertion-1 (Length: 936)
Name: NF5168-Insertion-1
Description: NF5168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5168-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 839; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 839; E-Value: 0
Query Start/End: Original strand, 8 - 907
Target Start/End: Complemental strand, 6626023 - 6625120
Alignment:
| Q |
8 |
gaaacatattttcattccttgcagagaaactggagcattgtgtgcaatgaaggaagcagacatattttttgatgatccaaaatctgccgagagtataaag |
107 |
Q |
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| T |
6626023 |
gaaacatattttcattccttgcagagaaactggagcattgtgtgcaatgaaggaagcagacatattttttgatgatccaaaatctgccgagagtataaag |
6625924 |
T |
|
| Q |
108 |
cagttagaacaggttttcatccatcacttggttgttaatgctgtttatttattatctgtatggtgtatgaagtatgtacatttaaattcactatctgttt |
207 |
Q |
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| T |
6625923 |
cagttagaacaggttttcatccatcacttggttgttaatgctgtttatttattatatgtatggtgtatgaagtatgtacatttaaattcactatctgttt |
6625824 |
T |
|
| Q |
208 |
tatttgttctgtctgttggtgtggacacttcagttataatcagaaccatattattatggttaaagagtttaaaacttaaaatgtgaatgtagaatatttc |
307 |
Q |
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| T |
6625823 |
tatttgttctgtctgttggtgtggacacttcagttataatcagaaccatattattatggttaaagagtttaaaacttaaaatgtgaatgtagaatatttc |
6625724 |
T |
|
| Q |
308 |
agtgtcaatgtcatagagacaataaatttcattccaagctagcctagatgcagactgcattgctcattgctttggattctcgacaattggatatgtaatt |
407 |
Q |
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| T |
6625723 |
agtgtcaatgtcatagagacaataaatttcattccaagctagcctagatgcagactgcattgctcattgctttggattctcgacaattggatatgtaatt |
6625624 |
T |
|
| Q |
408 |
tttggggggagatggatgtgtgatcaaattatctcatcaatttgctatctgaaatgacttagctattcaagatat-ttttattgttagttcacttgatcc |
506 |
Q |
| |
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| T |
6625623 |
tttggggggagatggatgtgtgatcaaattatctcatcaatttgctatctgaaatgacttagctattcaagatattttttattgttagctcacttgatcc |
6625524 |
T |
|
| Q |
507 |
ttattactattttgtacccatttctttttcaggaaattaaagttctcagccatctacaacatccaaatattgtgcagtattacggtagtgaaatagtaag |
606 |
Q |
| |
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| T |
6625523 |
ttattactattttgtacccatttctttttcaggaaattaaagttctcagccatctacaacatccaaatattgtgcagtattacggtagtgaaatagtaag |
6625424 |
T |
|
| Q |
607 |
tactctaaatgttgattaggagtcctgtgtccatgataagtaannnnnnngatagaaatgcca-acaacctaattataagtcataatattttcagataga |
705 |
Q |
| |
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| T |
6625423 |
tactctaaatgttgattaggagtcctgtgtccatgataagtaatttttttgatagaaatgccacacaacctaattataagtcataatattttcagataga |
6625324 |
T |
|
| Q |
706 |
agacaagttttatatttatttggaatttatccatcctggttcaataaataaatacgttcgggaccactgtggtgcgataacagaatccgttgttcggaat |
805 |
Q |
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| T |
6625323 |
agacaagttttatatttatttggaatttatccatcctggttcaataaataaatacgttcgggaccactgtggtgcgataacagaatccgttgttcggaat |
6625224 |
T |
|
| Q |
806 |
ttcacacgacatattctttcggggttggcttacttgcacagc-aaaagacaattcacaggtatgggtcacatgctggataagctgctc-atatccaacta |
903 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
6625223 |
ttcacacgacatattctttcggggttggcttacttgcacagcaaaaagacaattcacaggtatgggtcacatgcttgataagctgctcaatatccaacta |
6625124 |
T |
|
| Q |
904 |
ggat |
907 |
Q |
| |
|
|||| |
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|
| T |
6625123 |
ggat |
6625120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 802 - 863
Target Start/End: Original strand, 18718762 - 18718824
Alignment:
| Q |
802 |
gaatttcacacgacatattctttcggggttggcttacttgcacagc-aaaagacaattcacag |
863 |
Q |
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|||||||||| |||| |||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
18718762 |
gaatttcacaagacaatttcttttggggttggcttacttgcacagcaaaaagacaattcacag |
18718824 |
T |
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