View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5168-Insertion-2 (Length: 932)
Name: NF5168-Insertion-2
Description: NF5168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5168-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 469; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 8 - 546
Target Start/End: Original strand, 7561075 - 7561613
Alignment:
| Q |
8 |
taattatcattgttttcaaacaaactcaacatctttatgttaatattgcaattcgaattgtggtaccactctttcatttcggtaaacttatgacatgacc |
107 |
Q |
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| T |
7561075 |
taattatcattgttttcaaacaaactcaacatctttatgttaatattgcaattcgaattgtggtaccactctttcatttcggtaaacttatgatatgacc |
7561174 |
T |
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| Q |
108 |
aacaaaaaggtagcttccacaaaatgaatttgaaacattcttgtttatgacggatggcggaatgccaaaaatcctcgccatattaaacatgctattgcgg |
207 |
Q |
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| T |
7561175 |
aacaaaaaggtagcttccacaaaatgaatttgaaacattcttgtttatgacggatggcagaatgccaaaaatcctcgccatattaaacatgctattgcgg |
7561274 |
T |
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| Q |
208 |
cttatggcgccgcacatcccttaacaaaatccatatggctgttgtcaaaaaatccgccacagcatccaccattgcggcgtcttggcctccatttaacaac |
307 |
Q |
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| T |
7561275 |
cttatggcgccgcacatcccttaacaaaatccatatggctgttgtc-aaaaatccgccacagcgtccaccattgcggcgtcttggcctccatttaacaac |
7561373 |
T |
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| Q |
308 |
actgatttgcaaacatggagtgggtcagtttttcaaacatagtactcctagtggttgatattaaagttgttaaattaatttctggtttgtagttgttagg |
407 |
Q |
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| T |
7561374 |
actgatttgcaaacatggagtgggtcagtttttcaaacatagaactcctagtggttgatattaaagttgttaaattaatttctggtttgtagttgttagg |
7561473 |
T |
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| Q |
408 |
catcaagtttatctttcattcttannnnnnnngtatgtataagggtttttcttgaagggtttgatatcaatatattatttacacagtttaaattatttca |
507 |
Q |
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| T |
7561474 |
catcaagtttatctttcattctta-tttttttgtatgtataatggtttttcttgaagggtttgatatcaatatactatttacacagtttaaattatttca |
7561572 |
T |
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| Q |
508 |
aattgtacttcataactc--tgtgtatgttccattctatat |
546 |
Q |
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| T |
7561573 |
aattgtacttcataactctttgtgtatgttccattctatat |
7561613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 585 - 762
Target Start/End: Original strand, 7561625 - 7561799
Alignment:
| Q |
585 |
tatgcacgagattgtgtggtatttgattttagcttgattcattatcatcttttgttttttaagttaagaattattgtgtataatcatgtaagtttccaga |
684 |
Q |
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| T |
7561625 |
tatgcacgagattgtgtggtatttgattttagctcgattcattatcatcttttgttttttaagttaagaattcttgtgtataatcatgtaagtttccaga |
7561724 |
T |
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| Q |
685 |
aattattagacaaaatgagctgttcttgtgaaaaaccagtacagaattattacatttcatctcattgaaaataaagcc |
762 |
Q |
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| T |
7561725 |
aattattagacaaaatgagttgttcttgtgaaaaaccagtacaga---attacatttcatctcattgaaaataaagcc |
7561799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 771 - 914
Target Start/End: Original strand, 7561832 - 7561976
Alignment:
| Q |
771 |
agctaaaatttgtgtgtaagttttggttggttttcctatttcaggaaatatgtgttgtgagctagaataatttaacttgtagtaaactatggccaaacaa |
870 |
Q |
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| T |
7561832 |
agctaaaatttgtgtgtaagttttggttggtattcctatttcaggtaatatgtgttgtgagctagaataatttaacttgtagtaaactatggccaaacaa |
7561931 |
T |
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| Q |
871 |
tagatgatctaattatatcctgtcaaaaaat-gtaaaaactataa |
914 |
Q |
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| T |
7561932 |
tagatgatctaattatatcctgtaaaaaaatggtaaaaactataa |
7561976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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