View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5168-Insertion-3 (Length: 821)

Name: NF5168-Insertion-3
Description: NF5168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5168-Insertion-3
NF5168-Insertion-3
[»] chr2 (3 HSPs)
chr2 (400-818)||(37760733-37761143)
chr2 (10-195)||(37760332-37760526)
chr2 (248-329)||(37760577-37760659)


Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-175; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 400 - 818
Target Start/End: Original strand, 37760733 - 37761143
Alignment:
Q  400 acccttgcttatttaccatttcaacgttcaaaatgaacaattaacaaagaattcaagcnnnnnnnacgctgttttttcatcatagatactctcttttata 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  37760733 acccttgcttatttaccatttcaacgttcaaaatgaacaattaacaaagaattcaagctttctttacgctgttttttcatcatagatactctcttttata 37760832  T
Q  500 ttaacaatggcatttttccgttgcaactacaagaaacataaatggtacacacattctcgtttctttctttgagagattcttctcctccattctttttgga 599  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37760833 ttaacaatggtatttttccgttgcaactacaagaaacaaaaatggtacacacattctcgtttctttctttgagagattcttctcctccattctttttgga 37760932  T
Q  600 aaattagattttctagatgcattgcttttttaccatggt-aaaaatattgtttttcaccatagtg-aaaacataattattttccagtatgaataggcaaa 697  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||| | |||||||||||||| ||||||||||||    
T  37760933 aaattagattttctagatacattgcttttttaccatggtaaaaaatattgtttttcaccatagtgaaaaatagaattattttccagtctgaataggcaaa 37761032  T
Q  698 tccgatcaaatccagtttaaagaaatatggtaggggacaaaacgtgctttctctttcttttccttatatagtgaggtgaataaaacaaatattcacctgt 797  Q
    |||  |         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37761033 tccagt---------tttaaagaaatatggtaggggacaaaacgtgctttctctttcttttccttatatagtgaggtgaataaaacaaatattcacctgt 37761123  T
Q  798 cccacatagctcaaccaaacc 818  Q
     ||||||||||||||||||||    
T  37761124 -ccacatagctcaaccaaacc 37761143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 10 - 195
Target Start/End: Original strand, 37760332 - 37760526
Alignment:
Q  10 tttatttatcaaatcaacaagttgatggttaaaactcgaaaacttgtatagttgatgatgtataggctacctttggagaattgtaggta-----cccaac 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||     ||||||    
T  37760332 tttatttatcaaatcaacaagttgatggttaaaactcgaaaacttgtatagttgatgatgtataggttacctttgaagaattgtaggtaacttacccaac 37760431  T
Q  105 aatcaatcaaaattaaccaaataccacattgtccattttaaacacacat----tatgtaccaacaatggacaatctatatgtgcacgttggatgc 195  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||     | || |||||||||||||||||||||||||||||||||||||    
T  37760432 aatcaatcacaattaaccaaataccacattgtccattttaaacacacacacactgtgcaccaacaatggacaatctatatgtgcacgttggatgc 37760526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 37760577 - 37760659
Alignment:
Q  248 catcacaatgtaaaaacgagcacaccagaaacc-catgacgtggtaggatgcgaatatgcagaaacaaaattctcgattatac 329  Q
    ||||| ||||||||||||||||||||||||| | ||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  37760577 catcagaatgtaaaaacgagcacaccagaaaacgcatgacgtggtagaatgcgattatgcagaaacaaaattctcgattatac 37760659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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