View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5168-Insertion-4 (Length: 601)
Name: NF5168-Insertion-4
Description: NF5168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5168-Insertion-4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 8 - 601
Target Start/End: Complemental strand, 44299500 - 44298901
Alignment:
| Q |
8 |
gtttcttccatgcataacaatatggcaagattaaacaaccctagcattttagttacaatcattttgtttctattagtaacattaccatttgcctcatgtg |
107 |
Q |
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| T |
44299500 |
gtttcttccatgcataacaatatggcaagattaaataaccctagcattttagttacaatcattttgtttctattagtaacattaccatttgcctcatgtg |
44299401 |
T |
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| Q |
108 |
aatcagagtgctcgtccaaatatgaaggtgtatgtcacaacaaaaatgaagcactaaagctaaaattaattgcaatattttccatattagtgacgagcat |
207 |
Q |
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| T |
44299400 |
aatcagagtgctcgtccaaatatgaaggtgtatgtcacaacaaaaatgaagcactaaagctaaaattaattgcaatattttccatattagtgacgagcat |
44299301 |
T |
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| Q |
208 |
gattggaatttgtattccaattttcacaacttcgatcccagcgttaaaacccgacggagatttattcgtgatcgttaaggcttttgcctccggtgttata |
307 |
Q |
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| T |
44299300 |
gattggaatttgtattccaattttcacaacttcgatcccagcattaaaacccgacggagatttattcgtgatcattaaggcttttgcctccggtgttata |
44299201 |
T |
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| Q |
308 |
ctcgctaccggttacatgcacgtgatgccagattcatttcaggatctaaattctccttgtttgcctgaacggccttggaaaaaatttccattcaccactt |
407 |
Q |
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| T |
44299200 |
ctcgctaccggttacatgcacgtgatgccagattcatttcaggatctaaattctccttgtttgcctgaacggccttggaaaaaatttccattcaccactt |
44299101 |
T |
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| Q |
408 |
ttatcgctatggtgtctgctgtttttactctcatggttgattctttttctataagtttctttaagaagaaactttctgcgtcttcttctagtaatttaga |
507 |
Q |
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| T |
44299100 |
ttattgctatggtgtctgctgtttttactctcatggttgattctttttctataagtttctttaagaagaaactttctgcgtcttcttctagtaatttaga |
44299001 |
T |
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| Q |
508 |
agctggttctgagacaaaggaaccggaacaaattggtcatggtcat------ggtcttgtggttgcaaatggacatgaaaagaatgtaaatgctgaacaa |
601 |
Q |
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| T |
44299000 |
agctggttctgagacaaaggaaccggaacaaattggtcatggtcatggtcatggtcttgtggttgcaaatggacatgaaaagaatgtaaatgctgaacaa |
44298901 |
T |
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