View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5168-Insertion-9 (Length: 428)
Name: NF5168-Insertion-9
Description: NF5168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5168-Insertion-9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 8 - 428
Target Start/End: Original strand, 39940256 - 39940677
Alignment:
| Q |
8 |
ccttgttgctcaagcaatgtcattaagcatggtaattacaaaggcatggtccatgacattaaggtaacacaaacatcaaagtttgccagaaaatgtatga |
107 |
Q |
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| T |
39940256 |
ccttgttgctcaagcaatgtcattaagcatggtaattacaaagtcatggtccatgacattaaggtaacacaaacatcaaagtttgccagaaaatgtatga |
39940355 |
T |
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| Q |
108 |
ataataggaaaagagttattcgaaggcaaaggcaatagaataattcaaaatggtgtataatgttaaccactatataatgtatgcttgcttgtattaaaaa |
207 |
Q |
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| T |
39940356 |
ataataggaaaagagttattcgaaggcaaaggcgatagaataattcaaaatggtgtataatgttaaccactatataatgtatgcttgcttgtattaaaaa |
39940455 |
T |
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| Q |
208 |
tttaaacaca-nnnnnnnnnccttcttattatttgattttgacataaataatgaaaaattgtactataaagtaatttgatttctttgatcttaacattaa |
306 |
Q |
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| T |
39940456 |
ttaaaacacattttttgtttccttcttattatttgattttgacataaataatgaaaaattgtactataaagcaatttgatttctttgatcttaacattaa |
39940555 |
T |
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| Q |
307 |
tataagcattttgtctcaagaaattgacaaatacatgcatagcaaatagcaataatgtaacgcaaaaataaatgatctgttttggagtaaggtatattgc |
406 |
Q |
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| T |
39940556 |
tataagcattttgtctcaagaaattgacaaatacatgcatagcaaatagcaataatgtaatgcaaaaataaaggatctgttttggagtaaggtatattgc |
39940655 |
T |
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| Q |
407 |
tccttatggaggatgttttgct |
428 |
Q |
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| T |
39940656 |
tccttatggaggatgttttgct |
39940677 |
T |
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