View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5168_high_1 (Length: 376)
Name: NF5168_high_1
Description: NF5168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5168_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 83 - 309
Target Start/End: Original strand, 49680376 - 49680606
Alignment:
| Q |
83 |
ttatgcaggaagggtagaagttcaacttggaagctaagattggttttaggtgatgtacaaactttaatattcaatacaactagtttgtgtgcatatgggt |
182 |
Q |
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| T |
49680376 |
ttatgcaggaggggtagaagttcaacttggaagctaatattggttttaggtgatgtacaaactttaatattcaatacaactagtttgtgtgcatttgggt |
49680475 |
T |
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| Q |
183 |
atatgtttggctaagaccaa-----tagcttattggcttataagctcataggagtaaaacagtctattttactatcttatagtttatttttcaaatgtta |
277 |
Q |
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| T |
49680476 |
atatgtttggctaagaccaataaactagctta-tagcttacaagttcataggagtaaaacagtctattttactatcttatagtttatttttcaaatgtta |
49680574 |
T |
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| Q |
278 |
tttcaaataagatttaagtttagcatatcatc |
309 |
Q |
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| T |
49680575 |
tttcaaataagatttaagtttagcatatcatc |
49680606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 83 - 186
Target Start/End: Original strand, 49691395 - 49691498
Alignment:
| Q |
83 |
ttatgcaggaagggtagaagttcaacttggaagctaagattggttttaggtgatgtacaaactttaatattcaatacaactagtttgtgtgcatatgggt |
182 |
Q |
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| T |
49691395 |
ttatgcaggaagggtagaagtccagctcggaagctaggattggttttaggtgatgtacatactttaatgttcaatataactagtttgtgtgcatttgggc |
49691494 |
T |
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| Q |
183 |
atat |
186 |
Q |
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|||| |
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| T |
49691495 |
atat |
49691498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 49679623 - 49679683
Alignment:
| Q |
18 |
aattgtcgtgttgacagaaacggacaaatttattgcccccgcaaggtaatgcgttaacaaaa |
79 |
Q |
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| T |
49679623 |
aattgtcgtgttgacagaaaaggacaaatttattg-ccccgcaaggtaatgcgttaacaaaa |
49679683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 49691264 - 49691323
Alignment:
| Q |
19 |
attgtcgtgttgacagaaacggacaaatttattgcccccgcaaggtaatgcgttaacaaaa |
79 |
Q |
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| T |
49691264 |
attgtcatgttgacagcaacggacaaatttattg-cgtcgcaaggtaatgcattaacaaaa |
49691323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 111
Target Start/End: Original strand, 49687236 - 49687264
Alignment:
| Q |
83 |
ttatgcaggaagggtagaagttcaacttg |
111 |
Q |
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| T |
49687236 |
ttatgcaggaagggtagaagttcaacttg |
49687264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 18532505 - 18532460
Alignment:
| Q |
242 |
tattttactatcttatagtttatttttcaaatgttatttcaaataa |
287 |
Q |
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| T |
18532505 |
tatttcactatcttatagcttatttttcagatgttattttaaataa |
18532460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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