View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5169-Insertion-1 (Length: 800)

Name: NF5169-Insertion-1
Description: NF5169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5169-Insertion-1
NF5169-Insertion-1
[»] chr8 (1 HSPs)
chr8 (122-777)||(1752293-1752948)


Alignment Details
Target: chr8 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 122 - 777
Target Start/End: Original strand, 1752293 - 1752948
Alignment:
Q  122 ttattcccaagtctgataaagaaatttctaattagcaaaatacaaccaatagcagcatagcacatacgtacagctacatagatttacaacaaaatgtaag 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||    
T  1752293 ttattcccaagtctgataaagaaatttctaattagcaaaatacaaccaataacagcatagcatatacgtatagctacatagatttacaacaaaatgtaag 1752392  T
Q  222 taaaattaaaatgaagcaatacaccttcaaaa-ctctgcattaatctgacacacctattagtgagcgtacaaccattccattgtattgtgtgggatatcc 320  Q
     ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1752393 caaaattaaaatgaagcaatacaccttcaaaaactctgcattaatctgacacacctattagtgagcgtacaaccattccattgtattgtgtgggatatcc 1752492  T
Q  321 tgagccatggcccggatgtttttcaatcgatctttacccgtaacaaatatacatttgacttgtttatacgtgtcctcggcggtgtataacaagagagata 420  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1752493 tgagccatggtccggatgtttttcaatcgatctttacccgtaacaaatatacattttacttgtttatacgtgtcctcggcggtgtataacaagagagata 1752592  T
Q  421 cagtagaaatgatccatagtcttgatacagtccaagcaagcttttgatcagaatattcgacgtaaaacatggaagtaactccattaaaaatcatcacaag 520  Q
    ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||    
T  1752593 cagcagaaatgatccatagtcttgatacaatccaagcaagcttttgatcagaatattcgacgtaaaagaaggaagtaagtccattaaaaatcatcacaag 1752692  T
Q  521 aatatactccaatgttccgcttcgaggtggcgaaagtgcaatggagagaaaatagtatagataaagaatctaaatactcttaaaaaatgaatgtatgaaa 620  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  1752693 aatatactcaaatgttccgcttcgaggtggcgaaagtgcaatggagagaaaatagtatagataaagaatctgaatactcttaaaaaatggatgtatgaaa 1752792  T
Q  621 tgtaagaaattcaacttatccattgtttcctttaacaccaatcatagggttttcaagtgttacgagagtaccagaaataacgtgcagccacatagttata 720  Q
    |||||||||||||| ||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1752793 tgtaagaaattcaaattatccattatttcc-ttaacaccaatcacagggttttcaagtgttacgagagtaccagaaataacgtgcagccacatagttata 1752891  T
Q  721 ttccccatctctttttgcttttcaaaatagaagtaattgcaattgaataattcttga 777  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  1752892 ttcctcatctctttttgcttttcaaaatagaagtaattgcgattgaatatttcttga 1752948  T

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