View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5169-Insertion-2 (Length: 789)
Name: NF5169-Insertion-2
Description: NF5169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5169-Insertion-2 |
 |  |
|
| [»] chr4 (2 HSPs) |
 |  |
|
| [»] chr8 (6 HSPs) |
 |  |
|
| [»] scaffold0082 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr4 (Bit Score: 541; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 201 - 789
Target Start/End: Complemental strand, 28731477 - 28730889
Alignment:
| Q |
201 |
acttcccttgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28731477 |
acttcccttgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgttccgaatctcctccgtgaac |
28731378 |
T |
 |
| Q |
301 |
acatcgttccaggtatattcaccatcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||| |||||||| |
|
|
| T |
28731377 |
acatcgttccaggtatattcaccatcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcccggccgttgcgtaactgtcacttc |
28731278 |
T |
 |
| Q |
401 |
cgagtcgattcatccgaacagcacttccagcggtgctccgaaagtcttcatcggaggcgttgagattactcaaccagatctattcaacaacggaatggtt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28731277 |
cgagtcgattcatccgaacagcacttccggcggtgctccaaaagtattcatcggaggcgttgagattactcaaccagatctattcaacaacggaatggtt |
28731178 |
T |
 |
| Q |
501 |
gttgttcacggccttcaaggtttcgcctctacgctttctccgttttcttgcgacgttgagagaatgacttcactctcctttccgtttcatcctgatcacc |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28731177 |
gttgttcacggccttcaaggtttcgcctctacgctttctccgttttcttgcgacgttgagagaatgacttcactctcctttccgtttcatcctgatcacc |
28731078 |
T |
 |
| Q |
601 |
gttccagtgctcatgttcacagtcccggcgccaccgtgcttcctgctattatgcgcctcatgctacgagacacagcgctcaggctccgtaataacggttt |
700 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
28731077 |
gttccagtgctcatgttcacactcccggcgccaccgtgcttcctgctattatgcgcctcatgctacgagacacaacgctcaggctccgtaataacggttt |
28730978 |
T |
 |
| Q |
701 |
cagcatcctctccctcgcaatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgttgatgatctttcta |
789 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28730977 |
cagcatcctctcccttgcaatgaaggtaaaatacgaagagctcataactctcaacaacatgactattttcgccgttgatgatctttcta |
28730889 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 28731749 - 28731551
Alignment:
| Q |
8 |
aaatcttcttcactgtcatggaaaactattcaaccttttcctctctgcgattctcgatgctcttcttcgcaatcttcttcaccgccatgctttctggtga |
107 |
Q |
| |
|
||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28731749 |
aaatcttcttcaccgccatggaaaactcttcaaccttttcctctctgcgattctcgatgctcttcttcgcaatcttcttcaccgccatgctttccggtga |
28731650 |
T |
 |
| Q |
108 |
cgtcgtcaccgccactgaaggaatcgaagcttcattcccaccgccacctccacatgatcttcaagaacattcgttcttctctcacactgcattacttcc |
206 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28731649 |
cgttgtcaccgccactgaaggaatcgaagcttcattcccaccgccacctccacatgatcttcaagaacattcgttcttctctcacactgcattacttcc |
28731551 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 453; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 201 - 789
Target Start/End: Complemental strand, 38121903 - 38121315
Alignment:
| Q |
201 |
acttcccttgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaac |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| |||||||||| ||||||| |
|
|
| T |
38121903 |
acttcccctgcttggaccggtcctttcaccattttcgctccctctgatgcatcgcttcgcacttgcttttcttgctctgttccgaatctccttcgtgaac |
38121804 |
T |
 |
| Q |
301 |
acatcgttccaggtatattcaccatcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttc |
400 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| || |||||| ||||||||||||| |
|
|
| T |
38121803 |
acatagttccaggtatattcaccatcgaatatcttcggcgacttgcttttggcaccaagattgagactctcagtcccggccgttgcgtaaccgtcacttc |
38121704 |
T |
 |
| Q |
401 |
cgagtcgattcatccgaacagcacttccagcggtgctccgaaagtcttcatcggaggcgttgagattactcaaccagatctattcaacaacggaatggtt |
500 |
Q |
| |
|
|||||||||||||| ||||| ||||||| || ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38121703 |
cgagtcgattcatcagaacaacacttccggcagtgctccaaaagtcttcatcggaggcgttgagattactcaaccggatctattcaacaacggaatggtt |
38121604 |
T |
 |
| Q |
501 |
gttgttcacggccttcaaggtttcgcctctacgctttctccgttttcttgcgacgttgagagaatgacttcactctcctttccgtttcatcctgatcacc |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
38121603 |
gttgttcacggccttcaaggtttcgcctctaagctttctccgttttcttgcgacgttgagagaatgagttctctctcctttccgtttcatcctgatcacc |
38121504 |
T |
 |
| Q |
601 |
gttccagtgctcatgttcacagtcccggcgccaccgtgcttcctgctattatgcgcctcatgctacgagacacagcgctcaggctccgtaataacggttt |
700 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| || | | |||||||||||||||||||| |
|
|
| T |
38121503 |
gttccggtgctcatgttcacactcccggcgccaccgtgctccctgctattatgcgcctcatgctacgagatgcaatggtaaggctccgtaataacggttt |
38121404 |
T |
 |
| Q |
701 |
cagcatcctctccctcgcaatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgttgatgatctttcta |
789 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38121403 |
cagcatcctctcccttgctatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgctgttgatgatctttcta |
38121315 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 209 - 789
Target Start/End: Original strand, 38608228 - 38608808
Alignment:
| Q |
209 |
tgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaacacatcgtt |
308 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||| ||| | |||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38608228 |
tgcttggaccggtccttctaccattttcgctccctccgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgtt |
38608327 |
T |
 |
| Q |
309 |
ccaggtatattcaccatcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttccgagtcga |
408 |
Q |
| |
|
|||||| ||||||| ||||| ||| | || ||| |||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| |||| |
|
|
| T |
38608328 |
ccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcga |
38608427 |
T |
 |
| Q |
409 |
ttcatccgaacagcacttccagcggtgctccgaaagtcttcatcggaggcgttgagattactcaaccagatctattcaacaacggaatggttgttgttca |
508 |
Q |
| |
|
||||| |||||| ||| || |||||||||| ||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38608428 |
ttcattcgaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaacggaatggttgttgttca |
38608527 |
T |
 |
| Q |
509 |
cggccttcaaggtttcgcctctacgctttctccgttttcttgcgacgttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagt |
608 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608528 |
cggccttcaaggtttcgtctctacactttctccgttttcttgtgacgttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagt |
38608627 |
T |
 |
| Q |
609 |
gctcatgttcacagtcccggcgccaccgtgcttcctgctattatgcgcctcatgctacgagacacagcgctcaggctccgtaataacggtttcagcatcc |
708 |
Q |
| |
|
||||| ||||||| || ||||| ||||||||| |||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
38608628 |
gctcacgttcacactcacggcgtcaccgtgctccctgctataatgcgcctcatgctacgagatgcaatgctcaggctccgtaataacggtttcagcatcc |
38608727 |
T |
 |
| Q |
709 |
tctccctcgcaatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgttgatgatctttcta |
789 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608728 |
tctcccttgcgatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgttgatgatctttcta |
38608808 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 209 - 789
Target Start/End: Original strand, 38793011 - 38793591
Alignment:
| Q |
209 |
tgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaacacatcgtt |
308 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||| ||| | |||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38793011 |
tgcttggaccggtccttctaccattttcgctccctccgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgtt |
38793110 |
T |
 |
| Q |
309 |
ccaggtatattcaccatcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttccgagtcga |
408 |
Q |
| |
|
|||||| ||||||| ||||| ||| | || ||| |||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| |||| |
|
|
| T |
38793111 |
ccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcga |
38793210 |
T |
 |
| Q |
409 |
ttcatccgaacagcacttccagcggtgctccgaaagtcttcatcggaggcgttgagattactcaaccagatctattcaacaacggaatggttgttgttca |
508 |
Q |
| |
|
||||| |||||| ||| || |||||||||| ||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38793211 |
ttcattcgaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaacggaatggttgttgttca |
38793310 |
T |
 |
| Q |
509 |
cggccttcaaggtttcgcctctacgctttctccgttttcttgcgacgttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagt |
608 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793311 |
cggccttcaaggtttcgtctctacactttctccgttttcttgtgacgttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagt |
38793410 |
T |
 |
| Q |
609 |
gctcatgttcacagtcccggcgccaccgtgcttcctgctattatgcgcctcatgctacgagacacagcgctcaggctccgtaataacggtttcagcatcc |
708 |
Q |
| |
|
||||| ||||||| || ||||| ||||||||| |||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
38793411 |
gctcacgttcacactcacggcgtcaccgtgctccctgctataatgcgcctcatgctacgagatgcaatgctcaggctccgtaataacggtttcagcatcc |
38793510 |
T |
 |
| Q |
709 |
tctccctcgcaatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgttgatgatctttcta |
789 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793511 |
tctcccttgcgatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgttgatgatctttcta |
38793591 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 38122159 - 38121977
Alignment:
| Q |
24 |
catggaaaactattcaaccttttcctctctgcgattctcgatgctcttcttcgcaatcttcttcaccgccatgctttctggtgacgtcgtcaccgccact |
123 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
38122159 |
catggaaaactcttcaaccttttcctctatgcgattctctatgctcttcttcgcaatcttcttcaccgccatgctttccggtgacgaggtcaccgccact |
38122060 |
T |
 |
| Q |
124 |
gaaggaatcgaagcttcattcccaccgccacctccacatgatcttcaagaacattcgttcttctctcacactgcattacttcc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38122059 |
gaaggaatcgaagcttcattcccaccgccacctccgcacgatcttcaagaacattcgttcttctctcaaactgcattacttcc |
38121977 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 24 - 206
Target Start/End: Original strand, 38607967 - 38608146
Alignment:
| Q |
24 |
catggaaaactattcaaccttttcctctctgcgattctcgatgctcttcttcgcaatcttcttcaccgccatgctttctggtgacgtcgtcaccgccact |
123 |
Q |
| |
|
|||||||| || |||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||| |||||| |||||||||||| |
|
|
| T |
38607967 |
catggaaagctcttcaaccttttcttctcttcgattctcgatgctctt---cgcaatcttcttcaccgtcatgctttccggtgacaaggtcaccgccact |
38608063 |
T |
 |
| Q |
124 |
gaaggaatcgaagcttcattcccaccgccacctccacatgatcttcaagaacattcgttcttctctcacactgcattacttcc |
206 |
Q |
| |
|
||||| ||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38608064 |
gaaggtttcgaaccttcaatcccaccgctacctccacatgatcttcaagaacattcgttcttctctcacaccacattacttcc |
38608146 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 24 - 206
Target Start/End: Original strand, 38792750 - 38792929
Alignment:
| Q |
24 |
catggaaaactattcaaccttttcctctctgcgattctcgatgctcttcttcgcaatcttcttcaccgccatgctttctggtgacgtcgtcaccgccact |
123 |
Q |
| |
|
|||||||| || |||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||| |||||| |||||||||||| |
|
|
| T |
38792750 |
catggaaagctcttcaaccttttcttctcttcgattctcgatgctctt---cgcaatcttcttcaccgtcatgctttccggtgacaaggtcaccgccact |
38792846 |
T |
 |
| Q |
124 |
gaaggaatcgaagcttcattcccaccgccacctccacatgatcttcaagaacattcgttcttctctcacactgcattacttcc |
206 |
Q |
| |
|
||||| ||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38792847 |
gaaggtttcgaaccttcaatcccaccgctacctccacatgatcttcaagaacattcgttcttctctcacaccacattacttcc |
38792929 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 176; Significance: 2e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 201 - 428
Target Start/End: Complemental strand, 31529431 - 31529204
Alignment:
| Q |
201 |
acttcccttgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaac |
300 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||||||||||| ||| | |||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
31529431 |
acttcccctgcttggaccggtcctttcactattttcgctccctctgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaac |
31529332 |
T |
 |
| Q |
301 |
acatcgttccaggtatattcaccatcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || |||||| ||||||||||||| |
|
|
| T |
31529331 |
acatcgttccaggtatattcaccatcgaatatctccggcgacttgcttttggcaccaagattgagactctcagtcccggccgttgcgtaaccgtcacttc |
31529232 |
T |
 |
| Q |
401 |
cgagtcgattcatccgaacagcacttcc |
428 |
Q |
| |
|
|||||||||||||||||||| ||||||| |
|
|
| T |
31529231 |
cgagtcgattcatccgaacaacacttcc |
31529204 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 201 - 428
Target Start/End: Complemental strand, 51801499 - 51801272
Alignment:
| Q |
201 |
acttcccttgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaac |
300 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||||||||| | ||| | | |||||| |||||||||| |||| |||||||||||||||||| |
|
|
| T |
51801499 |
acttcccctgcttggaccggtcctttcactattttcgctccctctgatacttcgcttcacacttgcttttcttgctgtgttccgaatctcctccgtgaac |
51801400 |
T |
 |
| Q |
301 |
acatcgttccaggtatattcaccatcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttc |
400 |
Q |
| |
|
|||||||||||| ||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||| || |||||| ||| ||||||||| |
|
|
| T |
51801399 |
acatcgttccagatatattcaccatcaaatacctccggcgacttgcttttggcaccaagatcgagactctcagtcccggccgttgcgtaatcgtcacttc |
51801300 |
T |
 |
| Q |
401 |
cgagtcgattcatccgaacagcacttcc |
428 |
Q |
| |
|
||| |||||||||||||||| ||||||| |
|
|
| T |
51801299 |
cgattcgattcatccgaacaacacttcc |
51801272 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 163; Significance: 1e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 201 - 427
Target Start/End: Original strand, 34875789 - 34876015
Alignment:
| Q |
201 |
acttcccttgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaac |
300 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||| ||||||| |||||| ||| | | |||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
34875789 |
acttcccctgcttggaccggtcctttcactatttttgctccctttgatgcttcgcttcacacttgcttttcttgctctgttccgaatctcctccgtgaac |
34875888 |
T |
 |
| Q |
301 |
acatcgttccaggtatattcaccatcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||| ||||| ||||||| |
|
|
| T |
34875889 |
acatcgttccaggtatattcaccatcgaatatctccggcgacttgcttttggcaccaagatcgagactctcagtcccggccgttgcgtaaccatcacttc |
34875988 |
T |
 |
| Q |
401 |
cgagtcgattcatccgaacagcacttc |
427 |
Q |
| |
|
|||||||||||||||||||| |||||| |
|
|
| T |
34875989 |
cgagtcgattcatccgaacaacacttc |
34876015 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 453 - 598
Target Start/End: Complemental strand, 34183 - 34038
Alignment:
| Q |
453 |
ggaggcgttgagattactcaaccagatctattcaacaacggaatggttgttgttcacggccttcaaggtttcgcctctacgctttctccgttttcttgcg |
552 |
Q |
| |
|
||||| || ||||| || ||||| ||||| ||||||||||| ||||| ||| |||| ||||||||||||||| |||| |||| |||||||||| ||||| |
|
|
| T |
34183 |
ggaggggtggagatcacgcaacctgatctcttcaacaacggcatggtggttattcatggccttcaaggtttcatctctccgctctctccgttttattgcg |
34084 |
T |
 |
| Q |
553 |
acgttgagagaatgacttcactctcctttccgtttcatcctgatca |
598 |
Q |
| |
|
|||| ||||| ||||| || ||||| || ||||| ||||| ||||| |
|
|
| T |
34083 |
acgtggagaggatgacctcgctctcgttcccgttccatccagatca |
34038 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University