View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5169-Insertion-4 (Length: 609)
Name: NF5169-Insertion-4
Description: NF5169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5169-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 7 - 421
Target Start/End: Complemental strand, 12463165 - 12462754
Alignment:
| Q |
7 |
agatacatttttggaagaaaaatgaattgcattattacttttaaggctacactattgaagaatgttgagatgaaataatgatcaagtgagggataaccta |
106 |
Q |
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| T |
12463165 |
agatacattcttggaagaaaattgaattgcattattacttttaaggctacactattgaagaatgttgagatgaaat---gatcaagtgagggataaccta |
12463069 |
T |
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| Q |
107 |
gatcnnnnnnnnnnnnnggttacaaagctaaaaaagaagaaagatctttagnnnnnnnnnnn---gaggggaagaaagatctttagtgttgagtgtaaat |
203 |
Q |
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| T |
12463068 |
gatctttttatttttttg-ttacaaagctaaaaaagaagaaagatctttagatttttttttttttgaggggaagaaagatctttagtgttgaatgtaaat |
12462970 |
T |
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| Q |
204 |
ttttatgtgtctaattgagtataaattagcttgattttatttttattaaaattcaaattttgtaagaagcttaatatcttttnnnnnnnnnntctaaata |
303 |
Q |
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| T |
12462969 |
ttttatttgtctaattgagtataaattggcttgattttatttttattaaaattcgaattttgtaagaagcttaatatctttt--aaaaaaaatctaaata |
12462872 |
T |
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| Q |
304 |
atgaaacatatataagaatttatatgccataatgtttcaactcaatctcggattccacaattcattggtgtggtgttttggactgcaagaaaggggttgc |
403 |
Q |
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| T |
12462871 |
ataaaacatatataagaatttatatgccataatttctcaacttaatctttgattccgcaattcattggtgtggtgttttggactgcaagaaaggggttgc |
12462772 |
T |
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| Q |
404 |
accccattccttcttgtg |
421 |
Q |
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| T |
12462771 |
accccattccttcttgtg |
12462754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 572 - 609
Target Start/End: Complemental strand, 12462604 - 12462567
Alignment:
| Q |
572 |
ggggataaatgtgaagggcacaaaggttcaaaaattga |
609 |
Q |
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| T |
12462604 |
ggggataaatgtgaagggcacaaaggttcaaaaattga |
12462567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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