View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5169-Insertion-5 (Length: 585)
Name: NF5169-Insertion-5
Description: NF5169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5169-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 7 - 583
Target Start/End: Complemental strand, 39908361 - 39907785
Alignment:
| Q |
7 |
aacaactagccctttggttaggctatatatgtctcttcttggctaccacatggagaaatttaggtcagaggaacaaggttaacgatgttggatccaaatg |
106 |
Q |
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| T |
39908361 |
aacaactagccctttggttaggctatatatgtctcttcttggctaccacatggagaaattaaggtcagaggaacaaggttaacgatgttggatccaaatg |
39908262 |
T |
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| Q |
107 |
caaaataaaaaattggcttaacgtgaattattaattagtgcaactcaccttgatnnnnnnntaataatattaacgcaactcaccaaggtaatgagatggg |
206 |
Q |
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| T |
39908261 |
caaaataaaaaattggcttaacgtgaattattaattagtgcaactcaccttgataaaaaaataataatattaacgcaactcaccaaggtaatgagatggg |
39908162 |
T |
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| Q |
207 |
ggttaaacaaataacaacaattacgcagcatgtttgcaataatgttgcgaactgtcttggattagtaggaacttaaacaagttagcacggtctagtcaaa |
306 |
Q |
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| T |
39908161 |
ggttaaacaaataacaacaattacgcagcatgtttgcaataatgttgcgaactgtcttggattagtaggaacttaaacaagttagcacggtctagtcaaa |
39908062 |
T |
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| Q |
307 |
atcaaaggttgaatnnnnnnnttagttaagacagttggttaaagtaggattggtccaagttgactaagtatgattagaaaaattaaacagttctagaata |
406 |
Q |
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| T |
39908061 |
atcaaaggttgaataaaaaaattagttaagacagttggttaaagtaggattggtccaagttgaccaagtatgattagaaaaattaaacagttctagaata |
39907962 |
T |
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| Q |
407 |
taagattctcttctaaaatttacgagtactgtacttttataagacttatgttcataactagtcgaaaaatttacccaaagaggataaagatactcacagt |
506 |
Q |
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| T |
39907961 |
taagattctcttgaaaaatttacgagtactgtacttttataagacttatgttcataactagtcgaaaaatttacccaaagaggataaagatactcacagt |
39907862 |
T |
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| Q |
507 |
ggtagtggatccacgaaagtaggtactctgaggatatgatggccacatcccattgaggggaaagggggtgttttatc |
583 |
Q |
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| T |
39907861 |
ggtagtggatccacgaaagtaggtactccgaggatatgatggccacatcccattgaggggaaatggagtgttttatc |
39907785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 528
Target Start/End: Complemental strand, 4028013 - 4027959
Alignment:
| Q |
474 |
aatttacccaaagaggataaagatactcacagtggtagtggatccacgaaagtag |
528 |
Q |
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| T |
4028013 |
aatttatccaaagaggataaagatacttacagtggtggtggagcgacggaagtag |
4027959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 509
Target Start/End: Original strand, 6119825 - 6119861
Alignment:
| Q |
473 |
aaatttacccaaagaggataaagatactcacagtggt |
509 |
Q |
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| T |
6119825 |
aaatttagccaaagaggataaagatacttacagtggt |
6119861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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