View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5169-Insertion-8 (Length: 260)
Name: NF5169-Insertion-8
Description: NF5169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5169-Insertion-8 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 27585200 - 27585418
Alignment:
| Q |
8 |
tgaatgacagtgtaaaattgtacacacagacagtgcacagtcattaacctctttatttatcattttattttagttgatgaaattggttataagttataac |
107 |
Q |
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| T |
27585200 |
tgaatgacagtgtaaaattgtacacacagacagtgcgcagtcattaacctctttatttatcattttattttagttgatgaaattggttataagttataac |
27585299 |
T |
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| Q |
108 |
tataagaattggttactctaatacaacatgttaaatgcttactctaatacattgagtagctgagaaaagtggttcatgccgtgttcatagcttataacat |
207 |
Q |
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| T |
27585300 |
tataagaattggttactctaatacaacatgttaaatgcttactctaatacattgagtagctgagaaaagtggttcatgccttgttcatagcttataacat |
27585399 |
T |
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| Q |
208 |
atctgccaatagccaacaa |
226 |
Q |
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| T |
27585400 |
atctgccaatagccaacaa |
27585418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 27564374 - 27564171
Alignment:
| Q |
17 |
gtgtaaaattgtacacacagacagtgcacagtcattaacctctttatttatcattttattttagttgatgaaattggttataagttataactataagaat |
116 |
Q |
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| T |
27564374 |
gtgtaaaatttaatacactgacagtgcaaagtcattgacctctttatttatcattttattttatttgatgaaatccgttataa-------ctataagaat |
27564282 |
T |
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| Q |
117 |
tggttactctaatacaacatgttaaatgcttactctaatacattgagtagctgagaaaagtggttcatgccgtgttcatagcttataacatatc-tgcca |
215 |
Q |
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| T |
27564281 |
tagttactctaatactacacgttaaatgcttactctaatacattgagtagctgagaaaagcggttcatgccttgttcattgcttataacatatcttgcca |
27564182 |
T |
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| Q |
216 |
atagccaacaa |
226 |
Q |
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| T |
27564181 |
atagccaacaa |
27564171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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