View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5169-Insertion-9 (Length: 258)

Name: NF5169-Insertion-9
Description: NF5169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5169-Insertion-9
NF5169-Insertion-9
[»] chr3 (12 HSPs)
chr3 (7-252)||(42665408-42665644)
chr3 (42-130)||(49359535-49359623)
chr3 (57-131)||(5124724-5124798)
chr3 (43-129)||(40640542-40640628)
chr3 (51-131)||(54606758-54606838)
chr3 (59-129)||(44880845-44880915)
chr3 (61-130)||(18272150-18272219)
chr3 (65-130)||(45879428-45879493)
chr3 (43-131)||(11018412-11018500)
chr3 (43-110)||(29895937-29896004)
chr3 (43-149)||(43485345-43485451)
chr3 (59-107)||(4556621-4556669)
[»] chr4 (6 HSPs)
chr4 (42-147)||(22756838-22756943)
chr4 (42-117)||(22729777-22729852)
chr4 (42-117)||(1012362-1012437)
chr4 (66-131)||(9743640-9743705)
chr4 (64-129)||(2704566-2704629)
chr4 (53-117)||(5812633-5812697)
[»] chr5 (6 HSPs)
chr5 (43-131)||(26411349-26411437)
chr5 (42-129)||(25653638-25653725)
chr5 (65-117)||(31878449-31878501)
chr5 (59-128)||(41417503-41417572)
chr5 (65-129)||(10237468-10237532)
chr5 (42-110)||(22616566-22616634)
[»] chr7 (6 HSPs)
chr7 (59-129)||(22955236-22955306)
chr7 (59-117)||(37854218-37854276)
chr7 (59-128)||(4618679-4618748)
chr7 (59-110)||(4902413-4902464)
chr7 (65-129)||(23402301-23402365)
chr7 (63-117)||(8133487-8133541)
[»] chr1 (5 HSPs)
chr1 (42-126)||(28012123-28012207)
chr1 (59-129)||(16127574-16127644)
chr1 (42-129)||(421447-421534)
chr1 (43-131)||(15964152-15964240)
chr1 (64-129)||(10758229-10758294)
[»] chr8 (3 HSPs)
chr8 (42-128)||(35735887-35735973)
chr8 (59-131)||(4108838-4108908)
chr8 (58-131)||(23176688-23176759)
[»] chr6 (2 HSPs)
chr6 (64-131)||(19631801-19631868)
chr6 (42-131)||(11084061-11084148)
[»] chr2 (8 HSPs)
chr2 (42-129)||(41643926-41644013)
chr2 (43-131)||(58078-58166)
chr2 (52-131)||(34441840-34441917)
chr2 (42-129)||(43446365-43446452)
chr2 (59-129)||(6177829-6177899)
chr2 (75-129)||(18947538-18947592)
chr2 (65-129)||(19073412-19073476)
chr2 (43-131)||(41713216-41713302)
[»] scaffold0312 (1 HSPs)
scaffold0312 (42-129)||(9038-9125)
[»] scaffold0200 (1 HSPs)
scaffold0200 (59-129)||(24741-24811)
[»] scaffold0050 (1 HSPs)
scaffold0050 (64-128)||(5645-5709)


Alignment Details
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 7 - 252
Target Start/End: Original strand, 42665408 - 42665644
Alignment:
Q  7 agtaaggatacagtggcacatgtaccnnnnnnnnn-gatatagtggcacatcgtatgagcaaatgtgctatacaccatataatttgacgtgtcatgcatt 105  Q
    ||||||||||||||||||||||||||          |||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||    
T  42665408 agtaaggatacagtggcacatgtaccaaaaaaaaaagatatagtggcacatcatatgagcaaatgtgctatacaccccataatttgacgtgtcatgcatt 42665507  T
Q  106 aaatatacaaatcttcaatgattggttaaaatattaacttcaccnnnnnnntcattatcataacttcaccataaaaaatttctttaattaactatacatt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||| ||  || ||||||||||||||||       
T  42665508 aaatatacaaatcttcaatgattggttaaaatattaacttcaccaaaaaaatcattatcataacttcaccatagaattttcctttaattaactatac--- 42665604  T
Q  206 accattgattaacaagacatttaaatcaaatgtccttttattttgtt 252  Q
           ||| |||||||||||||||||||||||| |||||||||||    
T  42665605 -------attgacaagacatttaaatcaaatgtccgtttattttgtt 42665644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 130
Target Start/End: Original strand, 49359535 - 49359623
Alignment:
Q  42 gatatagtggcacatcgtatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattgg 130  Q
    |||||| || |||| | ||||||||||||||| ||||| |||||||| |||||||||||| |||||||| |||||| ||||||||||||    
T  49359535 gatataatgacacaccttatgagcaaatgtgcaatacatcatataatatgacgtgtcatggattaaatacacaaatgttcaatgattgg 49359623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 5124798 - 5124724
Alignment:
Q  57 cgtatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattggt 131  Q
    |||||||| |||||||| ||||||| ||||||||||| || ||| ||||||||| |||||| |||||||||||||    
T  5124798 cgtatgagtaaatgtgcaatacaccgtataatttgacatgacatacattaaatacacaaatgttcaatgattggt 5124724  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 40640542 - 40640628
Alignment:
Q  43 atatagtggcacatcgtatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattg 129  Q
    ||||| || |||||| |||| |||||||||| |||||||||||||| ||||||| |||| |||||||| ||||||  ||||||||||    
T  40640542 atataatgacacatcttatgggcaaatgtgcaatacaccatataatatgacgtgacatggattaaatacacaaatgctcaatgattg 40640628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 131
Target Start/End: Complemental strand, 54606838 - 54606758
Alignment:
Q  51 gcacatcgtatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattggt 131  Q
    ||||| |||||||| |||||||| ||||||| ||| ||||||| || ||| ||||||||| |||||| |||||||||||||    
T  54606838 gcacaccgtatgagtaaatgtgcaatacaccgtatgatttgacatgacatacattaaatacacaaatgttcaatgattggt 54606758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 129
Target Start/End: Complemental strand, 44880915 - 44880845
Alignment:
Q  59 tatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattg 129  Q
    ||||||||||||||| ||||||||||| || ||||||| |||| |||||||| | |||| |||||||||||    
T  44880915 tatgagcaaatgtgcaatacaccatattatctgacgtgacatggattaaatacataaatgttcaatgattg 44880845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 130
Target Start/End: Original strand, 18272150 - 18272219
Alignment:
Q  61 tgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattgg 130  Q
    ||||||||||||| |||||||||||||| |||| ||  ||| |||||||| |||||| ||||||||||||    
T  18272150 tgagcaaatgtgcaatacaccatataatctgacttgatatgaattaaatacacaaatgttcaatgattgg 18272219  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 45879428 - 45879493
Alignment:
Q  65 caaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattgg 130  Q
    ||||||||| |||||||||||||| ||||||| |||| |||||||| ||||||  |||||||||||    
T  45879428 caaatgtgcaatacaccatataatctgacgtggcatggattaaatacacaaatgctcaatgattgg 45879493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 131
Target Start/End: Complemental strand, 11018500 - 11018412
Alignment:
Q  43 atatagtggcacatcgtatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattggt 131  Q
    ||||||||||||| ||||||||||||||| |  ||||| |||||||| ||||||  ||| |||||||| | |||| |  ||||||||||    
T  11018500 atatagtggcacaccgtatgagcaaatgtacagtacacaatataattggacgtgatatgtattaaatacataaatgtaaaatgattggt 11018412  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 29896004 - 29895937
Alignment:
Q  43 atatagtggcacatcgtatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaata 110  Q
    ||||||||| ||| ||||||||||||||| |  |||||  |||||||||| ||| |||||||||||||    
T  29896004 atatagtggtacaccgtatgagcaaatgtacagtacacggtataatttgatgtgacatgcattaaata 29895937  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 149
Target Start/End: Complemental strand, 43485451 - 43485345
Alignment:
Q  43 atatagtggcacatcgtatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattggttaaaatattaa 142  Q
    ||||| || |||||| || | |||||| ||| || ||||||||||| ||| ||| |||| |||||||||  |||| ||||||||||||| | |  |||||    
T  43485451 atataatgacacatcttaggggcaaatatgcaatgcaccatataatctgaagtggcatgaattaaatatgaaaatgttcaatgattggtcataggattaa 43485352  T
Q  143 cttcacc 149  Q
    |||||||    
T  43485351 cttcacc 43485345  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 4556669 - 4556621
Alignment:
Q  59 tatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaa 107  Q
    ||||||||||||||| |||| ||||||||| ||||||| |||| |||||    
T  4556669 tatgagcaaatgtgcaatacgccatataatctgacgtgacatgaattaa 4556621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 42 - 147
Target Start/End: Original strand, 22756838 - 22756943
Alignment:
Q  42 gatatagtggcacatcgtatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattggttaaaatatta 141  Q
    |||||||||||||   |||||||||||||||| ||||||| |||||||||| ||| ||||||||||||| ||||||  ||||||||| ||||||||||||    
T  22756838 gatatagtggcacgctgtatgagcaaatgtgcaatacaccgtataatttgatgtggcatgcattaaatacacaaatactcaatgatttgttaaaatatta 22756937  T
Q  142 acttca 147  Q
    ||||||    
T  22756938 acttca 22756943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 22729852 - 22729777
Alignment:
Q  42 gatatagtggcacatcgtatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaat 117  Q
    |||||||||||||| | ||||||||||||||| ||||||| |||||||||| ||| ||||||||||||| ||||||    
T  22729852 gatatagtggcacaccatatgagcaaatgtgcaatacaccgtataatttgatgtggcatgcattaaatacacaaat 22729777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 1012437 - 1012362
Alignment:
Q  42 gatatagtggcacatcgtatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaat 117  Q
    |||||| || |||| | |||| |||||||||| |||||||||||||| ||||||| |||| |||||||| ||||||    
T  1012437 gatataatgacacaccttatgggcaaatgtgcaatacaccatataatctgacgtgacatggattaaatacacaaat 1012362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 9743705 - 9743640
Alignment:
Q  66 aaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattggt 131  Q
    |||||||| |||||||||||||| ||||||  |||| |||||||| |||||| |||||| ||||||    
T  9743705 aaatgtgcaatacaccatataatatgacgttacatggattaaatacacaaatgttcaataattggt 9743640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 2704629 - 2704566
Alignment:
Q  64 gcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattg 129  Q
    |||||||||| |||||||||||||  ||||||| | || |||||||| |||||| |||||||||||    
T  2704629 gcaaatgtgcaatacaccatataa--tgacgtgacgtgaattaaatacacaaatattcaatgattg 2704566  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 5812697 - 5812633
Alignment:
Q  53 acatcgtatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaat 117  Q
    ||||| ||||||||||||| | |||| | ||||||||||| ||  ||||||||||||| ||||||    
T  5812697 acatcatatgagcaaatgtacaatacgcaatataatttgatgttacatgcattaaatacacaaat 5812633  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 131
Target Start/End: Complemental strand, 26411437 - 26411349
Alignment:
Q  43 atatagtggcacatcgtatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattggt 131  Q
    ||||||||||| |  |||||||||||||| | |||||||||||||||||||||| |||| |||||||| | |||| |||||||||||||    
T  26411437 atatagtggcatactgtatgagcaaatgtacaatacaccatataatttgacgtgacatgtattaaatacataaatattcaatgattggt 26411349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 129
Target Start/End: Complemental strand, 25653725 - 25653638
Alignment:
Q  42 gatatagtggcacatcgtatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattg 129  Q
    |||||| || |||| | ||||||||||||||| |||||||||| ||| |||||||  ||| |||||||| ||||||  ||||||||||    
T  25653725 gatataatgacacaccttatgagcaaatgtgcaatacaccatacaatctgacgtgatatgaattaaatacacaaatactcaatgattg 25653638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 31878501 - 31878449
Alignment:
Q  65 caaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaat 117  Q
    ||||||||| |||||||||||||| ||||||| |||| |||||||| ||||||    
T  31878501 caaatgtgcaatacaccatataatctgacgtgacatgaattaaatacacaaat 31878449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 41417503 - 41417572
Alignment:
Q  59 tatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgatt 128  Q
    ||||||||||| ||| |||||||||||||| |||| ||  ||  |||||||| |||||| ||||||||||    
T  41417503 tatgagcaaatttgcaatacaccatataatctgacatgatataaattaaatacacaaatgttcaatgatt 41417572  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 10237532 - 10237468
Alignment:
Q  65 caaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattg 129  Q
    |||||| || |||||||||||||| |||||||  ||| |||||||| ||||||  ||||||||||    
T  10237532 caaatgcgcaatacaccatataatctgacgtgaaatgaattaaatacacaaatgctcaatgattg 10237468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 22616634 - 22616566
Alignment:
Q  42 gatatagtggcacatcgtatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaata 110  Q
    |||||| || |||| | |||| |||||||| | |||||||||||||| ||||||| |||| ||||||||    
T  22616634 gatataatgacacaccttatgggcaaatgtccaatacaccatataatatgacgtgacatggattaaata 22616566  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 22955236 - 22955306
Alignment:
Q  59 tatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattg 129  Q
    ||||||||||||||| |||||||||||||||||||||| |||| |||||||| |||||| |||||| ||||    
T  22955236 tatgagcaaatgtgcaatacaccatataatttgacgtgacatggattaaatacacaaatgttcaataattg 22955306  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 37854218 - 37854276
Alignment:
Q  59 tatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaat 117  Q
    ||||||||||||||| |||||||||||||| ||||||| |||| |||||||| ||||||    
T  37854218 tatgagcaaatgtgcaatacaccatataatgtgacgtgacatggattaaatacacaaat 37854276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 4618679 - 4618748
Alignment:
Q  59 tatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgatt 128  Q
    ||||| ||||||||| |||||||||||||||||| | | |||| |||||||| |||||| ||||||||||    
T  4618679 tatgaacaaatgtgcaatacaccatataatttgaagcgacatgaattaaatacacaaatgttcaatgatt 4618748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 4902464 - 4902413
Alignment:
Q  59 tatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaata 110  Q
    |||| ||||||||||||||||||||||||| ||||||| |||| ||||||||    
T  4902464 tatgggcaaatgtgctatacaccatataatctgacgtgacatggattaaata 4902413  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 23402301 - 23402365
Alignment:
Q  65 caaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattg 129  Q
    |||||| || |||||||||||||| ||||||| |||| |||||||| ||| || |||||||||||    
T  23402301 caaatgcgcaatacaccatataatatgacgtgacatgaattaaatacacagatgttcaatgattg 23402365  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 8133487 - 8133541
Alignment:
Q  63 agcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaat 117  Q
    |||||| |||| |||||||||||||| ||||||||| || |||||||| ||||||    
T  8133487 agcaaacgtgcaatacaccatataatctgacgtgtcttgaattaaatacacaaat 8133541  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 28012207 - 28012123
Alignment:
Q  42 gatatagtggcacatcgtatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatga 126  Q
    |||||||| ||||||| || |||||||||||| |||||||||||||||| | ||| ||||||||||||| ||||||  |||||||    
T  28012207 gatatagtagcacatcttaggagcaaatgtgcaatacaccatataatttaatgtgacatgcattaaatacacaaatactcaatga 28012123  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 129
Target Start/End: Complemental strand, 16127644 - 16127574
Alignment:
Q  59 tatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattg 129  Q
    |||||| |||||||| ||||| |||||||| |||||||||||| |||||||| ||||||  ||||||||||    
T  16127644 tatgagtaaatgtgcaatacatcatataatctgacgtgtcatggattaaatacacaaatgatcaatgattg 16127574  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 129
Target Start/End: Complemental strand, 421534 - 421447
Alignment:
Q  42 gatatagtggcacatcgtatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattg 129  Q
    |||||| ||| ||||||||| || |||||||| ||| ||  ||||||||||| || ||| ||||||||| |||||| |||||||||||    
T  421534 gatataatggaacatcgtataagtaaatgtgcaataaactgtataatttgacatgacatacattaaatacacaaatgttcaatgattg 421447  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 131
Target Start/End: Complemental strand, 15964240 - 15964152
Alignment:
Q  43 atatagtggcacatcgtatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattggt 131  Q
    ||||| || |||||| ||||  ||||||||| |||||| ||||||||||||||| |||  |||||||| ||||||  | ||||||||||    
T  15964240 atataatgacacatcttatggacaaatgtgcaatacactatataatttgacgtgacatagattaaatacacaaatgcttaatgattggt 15964152  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 10758229 - 10758294
Alignment:
Q  64 gcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattg 129  Q
    |||||||| | |||||||||||||| ||| ||| |||| |||||||| ||||||  ||||||||||    
T  10758229 gcaaatgttcaatacaccatataatctgatgtggcatgaattaaatacacaaatgctcaatgattg 10758294  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 128
Target Start/End: Original strand, 35735887 - 35735973
Alignment:
Q  42 gatatagtggcacatcgtatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgatt 128  Q
    |||||||||||||| | ||||||||||||||| |||||||||||||||| ||| | ||  ||||||||| ||||||  |||||||||    
T  35735887 gatatagtggcacaccttatgagcaaatgtgcaatacaccatataatttaacgggacacacattaaatacacaaatgctcaatgatt 35735973  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 131
Target Start/End: Original strand, 4108838 - 4108908
Alignment:
Q  59 tatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattggt 131  Q
    |||| |||||||||| |||||||||||||  ||||||| |||  |||||||| |||||| |||||||||||||    
T  4108838 tatgggcaaatgtgcaatacaccatataa--tgacgtggcattaattaaatacacaaatattcaatgattggt 4108908  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 131
Target Start/End: Original strand, 23176688 - 23176759
Alignment:
Q  58 gtatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattggt 131  Q
    ||||| ||| || ||| ||||||||||||||  |||||| |||||||||| || |||||| |||||||||||||    
T  23176688 gtatgggcagatttgcaatacaccatataat--gacgtgacatgcattaagtacacaaatattcaatgattggt 23176759  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 19631868 - 19631801
Alignment:
Q  64 gcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattggt 131  Q
    |||||||||| |||||||||||||| | ||||| |||| |||||||| |||||| |||||||||||||    
T  19631868 gcaaatgtgcaatacaccatataatctaacgtgacatggattaaatacacaaatgttcaatgattggt 19631801  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 11084061 - 11084148
Alignment:
Q  42 gatatagtggcacatcgtatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattggt 131  Q
    |||||| || |||| | |||| |||||||||  ||||||||||||||  |||||| |||| |||||||| | |||| |||||||||||||    
T  11084061 gatataatgacacaccttatgggcaaatgtgtaatacaccatataat--gacgtgacatggattaaatacataaatattcaatgattggt 11084148  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 129
Target Start/End: Complemental strand, 41644013 - 41643926
Alignment:
Q  42 gatatagtggcacatcgtatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattg 129  Q
    |||||| || |||| | ||||| ||||||||| |||||||||||||| ||||||| |||| |||||||| ||||||  ||||||||||    
T  41644013 gatataatgacacaccttatgatcaaatgtgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctcaatgattg 41643926  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 131
Target Start/End: Complemental strand, 58166 - 58078
Alignment:
Q  43 atatagtggcacatcgtatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattggt 131  Q
    |||| |||||||| ||||||| ||||||||| ||||||||||||||||||  || |||| |||||||| | | || || ||||||||||    
T  58166 atattgtggcacaccgtatgaacaaatgtgcaatacaccatataatttgatctgacatgaattaaatacagatatgttaaatgattggt 58078  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 131
Target Start/End: Original strand, 34441840 - 34441917
Alignment:
Q  52 cacatcgtatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattggt 131  Q
    |||||| |||| |||||||||| |||||||||||||  ||||||| |||| |||||||| |||||| |||||| ||||||    
T  34441840 cacatcttatgggcaaatgtgcaatacaccatataa--tgacgtgacatgaattaaatacacaaatattcaataattggt 34441917  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 43446365 - 43446452
Alignment:
Q  42 gatatagtggcacatcgtatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattg 129  Q
    ||||||||| || | | |||||||||| |||| | ||||||||||||||||||||  |||||||| |||  ||||| |||||||||||    
T  43446365 gatatagtgacataccctatgagcaaacgtgcaacacaccatataatttgacgtggtatgcattagatacgcaaatgttcaatgattg 43446452  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 129
Target Start/End: Complemental strand, 6177899 - 6177829
Alignment:
Q  59 tatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattg 129  Q
    |||| ||||||| || |||||||||||||| ||||||| |||| |||||||| ||||||  ||||||||||    
T  6177899 tatgggcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctcaatgattg 6177829  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 18947538 - 18947592
Alignment:
Q  75 atacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattg 129  Q
    |||||||||||||| ||||||| |||| |||||||| |||||| |||||||||||    
T  18947538 atacaccatataatctgacgtgacatggattaaatacacaaatgttcaatgattg 18947592  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 19073476 - 19073412
Alignment:
Q  65 caaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattg 129  Q
    ||||||||  |||||||||||||| ||||||| |||| |||||||| ||||||  ||||||||||    
T  19073476 caaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctcaatgattg 19073412  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 131
Target Start/End: Complemental strand, 41713302 - 41713216
Alignment:
Q  43 atatagtggcacatcgtatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattggt 131  Q
    ||||| || |||||| |||| |||||||||  | ||||||||||||  |||||| |||| |||||||| | |||| |||||||||||||    
T  41713302 atataatgacacatcttatgggcaaatgtgtaacacaccatataat--gacgtgacatgaattaaatacataaatattcaatgattggt 41713216  T

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Target: scaffold0312 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 9038 - 9125
Alignment:
Q  42 gatatagtggcacatcgtatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattg 129  Q
    |||||| ||| ||||||||| || |||||||| ||| ||  ||||||||||| || ||| ||||||||| |||||| |||||||||||    
T  9038 gatataatggaacatcgtataagtaaatgtgcaataaactgtataatttgacatgacatacattaaatacacaaatgttcaatgattg 9125  T

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Target: scaffold0200 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 24741 - 24811
Alignment:
Q  59 tatgagcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgattg 129  Q
    |||| ||||||| || |||||||||||||| ||||||| |||| |||||||| ||||||  ||||||||||    
T  24741 tatgggcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctcaatgattg 24811  T

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Target: scaffold0050 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 5709 - 5645
Alignment:
Q  64 gcaaatgtgctatacaccatataatttgacgtgtcatgcattaaatatacaaatcttcaatgatt 128  Q
    |||||||||| |||||||||||||| | || || |||| |||||||| ||||||  |||||||||    
T  5709 gcaaatgtgcaatacaccatataatctaacatgacatgaattaaatacacaaatgctcaatgatt 5645  T

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