View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5169_high_1 (Length: 619)
Name: NF5169_high_1
Description: NF5169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5169_high_1 |
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| [»] scaffold0034 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 64 - 608
Target Start/End: Complemental strand, 3209478 - 3208935
Alignment:
| Q |
64 |
gcatcaactacaccattaatcttatcccaacttacaactctctcccttcaacctcaacttcctcgccatcatcgctgactagttcttgctcttcttcttc |
163 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
3209478 |
gcatcaactacaccattaatcttatcccaacttacaactctctcccttcaacctcaacttcctcgccgtcatcgctgcctagttcttgctcttcttcttc |
3209379 |
T |
|
| Q |
164 |
cgtgaccgccccctcgtcctcttccgtttcaccatcgacgactgattcctcctcctcctactcaccgctctcaccgtcgtagctcttgtcttcaccggcg |
263 |
Q |
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| T |
3209378 |
catgaccgccccctcgtcctcttccgtttcaccatcgacgaccgcttactcctcctcctactcaccactctcaccgtcgtagctcttgtcttcaccggcg |
3209279 |
T |
|
| Q |
264 |
tttggcttaacgtcctcgtgagtcgtgtcggtgctgcggtggttgttttgaatgaggcgtttcagagtattgatgatttgtatttagatgaagaagagat |
363 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3209278 |
tttggcttaacgtcctcgtgagtcgtgttggtgctgcggtggttgttttgaatgaggcgtttcagagtattgatgatttgtatttagatgaagaagagat |
3209179 |
T |
|
| Q |
364 |
ctttgatggtgatttgctttcagttgttggtggtagctttgataccaaacgttgtttcagcgacggtgaaggagagtcacaatctgggtcagcgcttgtt |
463 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3209178 |
ctttgatggtgatttgctttcagttgttggtggtagcttcgataccaaacgttg-ttcagcgacggtgaaggagagtcacaatctgggtcagcgcttatt |
3209080 |
T |
|
| Q |
464 |
gtttcaaaaccgggtcttggtgcgaggatatgaggttctatgtgagaggatgagaagtcacgatctgggtcagcgcttgttcttcttgaggttgttgttg |
563 |
Q |
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| T |
3209079 |
gtttcaaaactgtgtcttggtgcgaggatatgaggttctatgtgagaggatgagaagtcacgatctgggtcagcgcttgttcttcttgaggttgttgttg |
3208980 |
T |
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| Q |
564 |
aggatgagaagtctgttaaggttgtggttgttgatgtgagtgatg |
608 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208979 |
aggatgagaagtctgttaaggttgtggttgttgatgtgagtgatg |
3208935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0034 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: scaffold0034
Description:
Target: scaffold0034; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 64 - 608
Target Start/End: Complemental strand, 109313 - 108764
Alignment:
| Q |
64 |
gcatcaactacaccattaatcttatcccaacttacaactctctcccttcaacctcaacttcctcgccatcatcgctgactagttcttgctcttcttcttc |
163 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
109313 |
gcatcaactacatcattaattttatcccaacttacaactctctcccttcaacctcaacttcctcgccgtcatcgctgcctagttcttgctcttcttcttc |
109214 |
T |
|
| Q |
164 |
cgtgaccgccccctcgtcctcttccgtttcaccatcgacgactgattcctcctcctcctactcaccgctctcaccgtcgtagctcttgtcttcaccggcg |
263 |
Q |
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| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
109213 |
catgaccgccct-tcgtcctcttccgtttcaccatcgacgacctcttcctcctcctcctactcaccgctctcaccgtcgtagctcttgtcttcaccggcg |
109115 |
T |
|
| Q |
264 |
tttggcttaacgtcctcgtgagtcgtgtcggtgct----------gcggtggttgttttgaatgaggcgtttcagagtattgatgatttgtatttagatg |
353 |
Q |
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|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
109114 |
tt-ggcttaacgtcctcgtgagtcgtgtcggtgctcgtcggtgttgcggtggttgttttgaatgaggcgtttcagagtattgatgatttgtatttagatg |
109016 |
T |
|
| Q |
354 |
aagaagagatctttgatggtgatttgctttcagttgttggtggtagctttgataccaaacgttgtttcagcgacggtgaaggagagtcacaatctgggtc |
453 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
109015 |
aagaagagatctttgatggtgatttgctttcagttgttggtggtagcttcgataccaaacgttgtttcagcgatggtgaaggagagtcacaatctgggtc |
108916 |
T |
|
| Q |
454 |
agcgcttgttgtttcaaaaccgggtcttggtgcgaggatatgaggttctatgtgagaggatgagaagtcacgatctgggtcagcgcttgttcttcttgag |
553 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
108915 |
agcgtttgttgtttcaaaaccgtgtcttggtgcgaggatatgaggttctatgtgagaggatgagaagtcacgatctgggtcagcgcttgttcttcttga- |
108817 |
T |
|
| Q |
554 |
gttgttgttgaggatgagaagtctgttaaggttgtggttgttgatgtgagtgatg |
608 |
Q |
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| T |
108816 |
--agttgttgaggatgagaagtctgttaaggttgtggttgttgatgtgagtgatg |
108764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 166; Significance: 2e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 145 - 402
Target Start/End: Original strand, 31283114 - 31283374
Alignment:
| Q |
145 |
gttcttgctcttcttcttccgtgaccgccccctcgtcctcttccgtttcaccatcgacgactgattcctcctcctcctactcaccgctctcaccgtcgta |
244 |
Q |
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||||||||| ||||||||||||||||||||| |||||||||||||||||||||| || ||| | ||||||||| |||||||| || | |||||| |||| |
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| T |
31283114 |
gttcttgcttttcttcttccgtgaccgccccgtcgtcctcttccgtttcaccattgatgaccgcttcctcctcgtcctactctccaccctcaccatcgtc |
31283213 |
T |
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| Q |
245 |
gctcttgtcttcaccggcgtttggcttaacgtcctcgtg--agtcgt-gtcggtgctgcggtggttgttttgaatgaggcgtttcagagtattgatgatt |
341 |
Q |
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||||||||||||||||||||||||||||||||||| ||| ||| | |||||| ||||||||||||||||| ||| |||||||| |||||||||||||| |
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| T |
31283214 |
gctcttgtcttcaccggcgtttggcttaacgtccttgtgtcagtgctcgtcggttctgcggtggttgttttgcatgcggcgtttcggagtattgatgatt |
31283313 |
T |
|
| Q |
342 |
tgtatttagatgaagaagagatctttgatggtgatttgctttcagttgttggtggtagctt |
402 |
Q |
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| T |
31283314 |
tgtatttagatgaagaagagatctttgatggtgatttgctttcagttgttggtggtagctt |
31283374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 31282834 - 31282882
Alignment:
| Q |
76 |
ccattaatcttatcccaacttacaactctctcccttcaacctcaacttc |
124 |
Q |
| |
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||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
31282834 |
ccattaatcctactccaacttacaactctctcccttcaacctcaacttc |
31282882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 544 - 608
Target Start/End: Original strand, 36169979 - 36170043
Alignment:
| Q |
544 |
tcttcttgaggttgttgttgaggatgagaagtctgttaaggttgtggttgttgatgtgagtgatg |
608 |
Q |
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||||||||||||||||||||||||||| |||| |||||||||| | ||||||||||||||||||| |
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| T |
36169979 |
tcttcttgaggttgttgttgaggatgaaaagtatgttaaggttattgttgttgatgtgagtgatg |
36170043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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