View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5169_high_10 (Length: 370)

Name: NF5169_high_10
Description: NF5169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5169_high_10
NF5169_high_10
[»] chr5 (6 HSPs)
chr5 (181-360)||(28398009-28398184)
chr5 (19-179)||(28398248-28398407)
chr5 (34-177)||(28390398-28390540)
chr5 (19-56)||(28398417-28398454)
chr5 (27-66)||(30485684-30485723)
chr5 (26-67)||(28398549-28398590)
[»] chr3 (3 HSPs)
chr3 (29-80)||(25735577-25735628)
chr3 (36-69)||(25735471-25735504)
chr3 (35-71)||(39721981-39722017)
[»] chr8 (4 HSPs)
chr8 (34-77)||(37044081-37044124)
chr8 (29-69)||(72802-72842)
chr8 (123-179)||(43488063-43488118)
chr8 (36-69)||(37044154-37044187)
[»] chr4 (3 HSPs)
chr4 (29-77)||(32742991-32743039)
chr4 (29-68)||(35765449-35765488)
chr4 (29-67)||(24572073-24572111)
[»] chr1 (2 HSPs)
chr1 (29-91)||(13694133-13694195)
chr1 (31-67)||(25089836-25089872)
[»] chr6 (3 HSPs)
chr6 (35-71)||(6261239-6261275)
chr6 (29-77)||(29064878-29064926)
chr6 (29-77)||(29119732-29119780)


Alignment Details
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 181 - 360
Target Start/End: Complemental strand, 28398184 - 28398009
Alignment:
Q  181 acattggtataacatttttcctattataatttttcagttttgtatcaatgaaattaattagaaatagtgacaacctcatgctatgacaaatttagatttc 280  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||    
T  28398184 acattggtataacatttttcctattattatttttcagttttgtatcaatgaaatta----gaaatagtgacaacctcatgctatgacaaatttagatttc 28398089  T
Q  281 tcaagttgtggacactttatgaagactgctagaatgtcgtaacaaatagttggaactcttgaattagtggttgtcctatg 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28398088 tcaagttgtggacactttatgaagactgctagaatgtcgtaacaaatagttggaactcttgaattagtggttgtcctatg 28398009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 28398407 - 28398248
Alignment:
Q  19 ttaagtaccatattgatatatgagtaaaaatatagatatgtgtataaattacagaaaaatatgtcaccatattgatagatgctgaaaaaatgtaagaata 118  Q
    ||||||| ||||||||||||||||||||||||||||    ||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||    
T  28398407 ttaagtatcatattgatatatgagtaaaaatatagacgcatgtataaattacaaaaaattatgtcaccttattgatagatgctgaaaaaatgtaagaata 28398308  T
Q  119 tccatatcactcacaaatatttgtctcgta-ttttttatttatatttatcactcacaaatat 179  Q
    | |  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28398307 ttc--atcactcacaaatatttgtctcgtatttttttatttatatttatcactcacaaatat 28398248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 28390540 - 28390398
Alignment:
Q  34 atatatgagtaaaaatatagatatgtgtataaattacagaaaaatatgtcaccatattgatagatgc-tgaaaaaatgtaagaatatccatatcactcac 132  Q
    |||||||||||||||||||||| | | ||| ||||||||||||||||||||||||||||||| |||| | ||||||||||||||| |||  |||||||||    
T  28390540 atatatgagtaaaaatatagatgtatatatgaattacagaaaaatatgtcaccatattgatatatgcataaaaaaatgtaagaatgtcc--atcactcac 28390443  T
Q  133 aaatatttgtctcgtattttttatttatatttatcactcacaaat 177  Q
    ||||||| ||| ||||| ||| ||||||||||||||| |||||||    
T  28390442 aaatattggtcccgtatatttgatttatatttatcacccacaaat 28390398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 28398454 - 28398417
Alignment:
Q  19 ttaagtaccatattgatatatgagtaaaaatatagata 56  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28398454 ttaagtaccatattgatatatgagtaaaaatatagata 28398417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 30485684 - 30485723
Alignment:
Q  27 catattgatatatgagtaaaaatatagatatgtgtataaa 66  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  30485684 catattgatatatgaataaaaatatagatatatgtataaa 30485723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 28398590 - 28398549
Alignment:
Q  26 ccatattgatatatgagtaaaaatatagatatgtgtataaat 67  Q
    |||| ||||||||||| |||||||||||| ||||||||||||    
T  28398590 ccatgttgatatatgactaaaaatatagacatgtgtataaat 28398549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 25735577 - 25735628
Alignment:
Q  29 tattgatatatgagtaaaaatatagatatgtgtataaattacagaaaaatat 80  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  25735577 tattaatatatgagtaaaaatatagatacgtgtataaattacagaaaaatat 25735628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 69
Target Start/End: Original strand, 25735471 - 25735504
Alignment:
Q  36 atatgagtaaaaatatagatatgtgtataaatta 69  Q
    ||||||||||||||||||| ||||||||||||||    
T  25735471 atatgagtaaaaatatagacatgtgtataaatta 25735504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 39722017 - 39721981
Alignment:
Q  35 tatatgagtaaaaatatagatatgtgtataaattaca 71  Q
    |||||||||||||||||||| |||| |||||||||||    
T  39722017 tatatgagtaaaaatatagacatgtatataaattaca 39721981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 37044124 - 37044081
Alignment:
Q  34 atatatgagtaaaaatatagatatgtgtataaattacagaaaaa 77  Q
    ||||||||||||||||||||| |||||||||||||||| |||||    
T  37044124 atatatgagtaaaaatatagacatgtgtataaattacaaaaaaa 37044081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 72802 - 72842
Alignment:
Q  29 tattgatatatgagtaaaaatatagatatgtgtataaatta 69  Q
    ||||||||||||| |||||||||||| ||||||||||||||    
T  72802 tattgatatatgaataaaaatatagacatgtgtataaatta 72842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 43488063 - 43488118
Alignment:
Q  123 tatcactcacaaatatttgtctcgtattttttatttatatttatcactcacaaatat 179  Q
    ||||||| ||||||||||||| ||||||||||| |||||||||||| | ||||||||    
T  43488063 tatcactaacaaatatttgtcccgtatttttta-ttatatttatcagtgacaaatat 43488118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 69
Target Start/End: Complemental strand, 37044187 - 37044154
Alignment:
Q  36 atatgagtaaaaatatagatatgtgtataaatta 69  Q
    ||||||||||||||||||| ||||||||||||||    
T  37044187 atatgagtaaaaatatagacatgtgtataaatta 37044154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 32742991 - 32743039
Alignment:
Q  29 tattgatatatgagtaaaaatatagatatgtgtataaattacagaaaaa 77  Q
    |||| |||||||||||||| |||||| |||||||||||||||| |||||    
T  32742991 tattaatatatgagtaaaagtatagacatgtgtataaattacaaaaaaa 32743039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 35765449 - 35765488
Alignment:
Q  29 tattgatatatgagtaaaaatatagatatgtgtataaatt 68  Q
    ||||||||||||| |||||||||||| |||||||||||||    
T  35765449 tattgatatatgaataaaaatatagacatgtgtataaatt 35765488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 24572073 - 24572111
Alignment:
Q  29 tattgatatatgagtaaaaatatagatatgtgtataaat 67  Q
    ||||||||||||| |||||||||||| ||||||||||||    
T  24572073 tattgatatatgaataaaaatatagacatgtgtataaat 24572111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 13694195 - 13694133
Alignment:
Q  29 tattgatatatgagtaaaaatatagatatgtgtataaattacagaaaaatatgtcaccatatt 91  Q
    ||||||||||||| |||||||||||| |||||||| ||||| | ||||||  ||| |||||||    
T  13694195 tattgatatatgaataaaaatatagacatgtgtatcaattaaaaaaaaatcggtccccatatt 13694133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 25089872 - 25089836
Alignment:
Q  31 ttgatatatgagtaaaaatatagatatgtgtataaat 67  Q
    |||||||||||||||||||||||| || |||||||||    
T  25089872 ttgatatatgagtaaaaatatagagatttgtataaat 25089836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 6261275 - 6261239
Alignment:
Q  35 tatatgagtaaaaatatagatatgtgtataaattaca 71  Q
    |||||||||||||||||||| |||| |||||||||||    
T  6261275 tatatgagtaaaaatatagacatgtatataaattaca 6261239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 29064878 - 29064926
Alignment:
Q  29 tattgatatatgagtaaaaatatagatatgtgtataaattacagaaaaa 77  Q
    ||||||||||||| |||||||||||| || |||| |||||||| |||||    
T  29064878 tattgatatatgaataaaaatatagacatatgtacaaattacaaaaaaa 29064926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 29119732 - 29119780
Alignment:
Q  29 tattgatatatgagtaaaaatatagatatgtgtataaattacagaaaaa 77  Q
    ||||||||||||| |||||||||||| || |||| |||||||| |||||    
T  29119732 tattgatatatgaataaaaatatagacatatgtacaaattacaaaaaaa 29119780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University