View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5169_high_18 (Length: 273)
Name: NF5169_high_18
Description: NF5169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5169_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 269
Target Start/End: Complemental strand, 52968407 - 52968148
Alignment:
| Q |
10 |
attatactggacagtaattaaaaagaacttccatgaaaggctaaccagaaccaggatctaaacttgatcacaatatatat----ttcatttgtttaatag |
105 |
Q |
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| T |
52968407 |
attataatggacagtaattaaatagaacttccatgaaaggctaaccagaaccaggatctaaacttgatcacaatatatatatatttcatttgtttaatag |
52968308 |
T |
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| Q |
106 |
aattaattttaacaaccaacattttctataatttttagtttaacacttgtatataaccatcaatataatttcacaagtttgaatgatctgcaagatatat |
205 |
Q |
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| T |
52968307 |
aattaattttaacaaccaacattttctataatttttagtttaacacttgtatataaccatc-----aatttcacaagtttgaatgatctgcaagatatat |
52968213 |
T |
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| Q |
206 |
aagtaacacaagttgcttttcaacttcaatcactttccttttaac-ttttctaaattctatcact |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
52968212 |
aagtaacacaagttgcttttcaacttcaatcactttccttttaactttttttaaattctatcact |
52968148 |
T |
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