View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5169_high_2 (Length: 541)
Name: NF5169_high_2
Description: NF5169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5169_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 487; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 6 - 520
Target Start/End: Original strand, 30707242 - 30707756
Alignment:
| Q |
6 |
agcagcacagaccgatccatagacagaaaaacccttctctttccactcatttaagcatttattcagctcttcttcattcctagagcaagtgaacactgtg |
105 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30707242 |
agcatcacaaaccgatccatagacagaaaaacccttctctttccactcatttaagcatttattcagctcttcttcattcctagagcaagtgaacactgtg |
30707341 |
T |
|
| Q |
106 |
gcaccaaactcagctagttcctccaccacagcatgaccgattccacgagttccaccagtaactagagcagtagttcccttgagagaccatcttgagcctc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30707342 |
gcaccaaactcagctagttcctccaccacagcatgaccgattccacgagttccaccagtaactagagcagtagttcccttgagagaccatcttgagcctc |
30707441 |
T |
|
| Q |
206 |
tcatactgctctcctggttctccattattgtttttgtgagttctcttacacagagaacgtgtttgttttgttgttgtgaaccggatatcctttgcgcgca |
305 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30707442 |
tcatactgctctcctggttctccattgttgtttttgtgagttctcttacacggagaacgtgtttgttttgttgttgtgaaccggatatcctttgcgcaca |
30707541 |
T |
|
| Q |
306 |
attgcagtgactaatccctcgagttgggtgggactgcgaggagtggcgaaactctctctcaagaaatttaacactgtattcgcatggctgaatttgaatc |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30707542 |
attgcagtgactaatccctcgagttgggtgggactgcgaggagtggtgaaactctctctcaagaaatttaacactgtattcgcatggctgaatttgaatc |
30707641 |
T |
|
| Q |
406 |
aaggatttctggttaaactgaaagagatcgtttatcatctcatggaagtgttcatatgccaaacaacctcgtttatttatatttgaaaaaactgtgcagt |
505 |
Q |
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| T |
30707642 |
aaggatttctggttaaactgaaagagatcgtttatcatctcatgcaagtgttcatatgccaaacaacctcgtttatttatatttgaaaaaactgtgcagt |
30707741 |
T |
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| Q |
506 |
gtgctgactgtggcc |
520 |
Q |
| |
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||||||||||||||| |
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| T |
30707742 |
gtgctgactgtggcc |
30707756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 30719621 - 30719846
Alignment:
| Q |
19 |
gatccatagacagaaaaacccttctctttccactcatttaagcatttattcagctcttcttcattcctagagcaagtgaacactgtggcaccaaactcag |
118 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||||| |||||||||||| |||| |||||||| |||||| | ||||||||||||||||||| |
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| T |
30719621 |
gatccataaacagaaaaacctttctctttccactcatttaagcgtttattcagctcctcttggttcctagaacaagtgtagactgtggcaccaaactcag |
30719720 |
T |
|
| Q |
119 |
ctagttcctccaccacagcatgaccgattccacgagttccaccagtaactagagcagtagttcccttgagagaccatcttgagcctctcatactgctctc |
218 |
Q |
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| T |
30719721 |
cgagttcttccacgatagcatgtccgattccacgtgttccgccggtgacgagagcagtgaatcccttgagggaccatcttgagcttctgctactgctctc |
30719820 |
T |
|
| Q |
219 |
ctggttctccattattgtttttgtga |
244 |
Q |
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|||| ||||| |||||||||||| |
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| T |
30719821 |
tgcgttcgccattcttgtttttgtga |
30719846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 30702070 - 30702253
Alignment:
| Q |
19 |
gatccatagacagaaaaacccttctctttccactcatttaagcatttattcagctcttcttcattcctagagcaagtgaacactgtggcaccaaactcag |
118 |
Q |
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|||||||| ||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||| | ||||||||||||| |
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| T |
30702070 |
gatccataaacagaaaaacctttctccttccactcatttaagcatttattcaattcttcttcattcctagaacaagtgtacactatagcaccaaactcag |
30702169 |
T |
|
| Q |
119 |
ctagttcctccaccacagcatgaccgattccacgagttccaccagtaactagagcagtagttcccttgagagaccatcttgagc |
202 |
Q |
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| T |
30702170 |
caagttcctctacgatagcatgaccgatcccacgagttccgccggtgacaagagctgtgaatcccttgagggaccatcttgagc |
30702253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 30797047 - 30796994
Alignment:
| Q |
148 |
ccacgagttccaccagtaactagagcagtagttcccttgagagaccatcttgag |
201 |
Q |
| |
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||||||||||||||||| || |||||||| |||| ||||| |||||||||||| |
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| T |
30797047 |
ccacgagttccaccagtgacgagagcagtctttcctttgagggaccatcttgag |
30796994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 328
Target Start/End: Original strand, 43621281 - 43621338
Alignment:
| Q |
271 |
ttttgttgttgtgaaccggatatcctttgcgcgcaattgcagtgactaatccctcgag |
328 |
Q |
| |
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|||| |||||||||| ||| |||||| ||||||||| | ||| ||||||||||||||| |
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| T |
43621281 |
tttttttgttgtgaatcgggtatcctctgcgcgcaactacagagactaatccctcgag |
43621338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 27763879 - 27763835
Alignment:
| Q |
284 |
aaccggatatcctttgcgcgcaattgcagtgactaatccctcgag |
328 |
Q |
| |
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||||||||||||| ||||||||| ||| | ||||||||||||||| |
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| T |
27763879 |
aaccggatatcctctgcgcgcaactgcggagactaatccctcgag |
27763835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 46864242 - 46864206
Alignment:
| Q |
291 |
tatcctttgcgcgcaattgcagtgactaatccctcga |
327 |
Q |
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|||||||||||||||| ||||| |||||||||||||| |
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| T |
46864242 |
tatcctttgcgcgcaactgcagagactaatccctcga |
46864206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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