View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5169_high_22 (Length: 250)

Name: NF5169_high_22
Description: NF5169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5169_high_22
NF5169_high_22
[»] chr3 (5 HSPs)
chr3 (1-236)||(11591404-11591639)
chr3 (1-92)||(27477562-27477653)
chr3 (1-92)||(27488787-27488878)
chr3 (3-91)||(42965939-42966027)
chr3 (3-91)||(42974370-42974458)
[»] chr4 (2 HSPs)
chr4 (3-236)||(31831764-31831997)
chr4 (42-135)||(23858756-23858849)
[»] chr6 (1 HSPs)
chr6 (1-136)||(3814858-3814993)
[»] chr7 (2 HSPs)
chr7 (3-121)||(2867115-2867233)
chr7 (3-103)||(22314154-22314254)
[»] chr5 (1 HSPs)
chr5 (1-183)||(18301451-18301633)
[»] chr2 (1 HSPs)
chr2 (1-91)||(41491176-41491266)


Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 11591404 - 11591639
Alignment:
Q  1 catgtggatatgggaacttgtatagccaagggtatgggactaacacagctgctttaagcactgctctattcaacagtggattaagctgtggagcatgttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11591404 catgtggatatgggaacttgtatagccaagggtatgggactaacacagctgctttaagcactgctctattcaacagtggattaagctgtggagcatgttt 11591503  T
Q  101 tgagataaaatgtgttaatgaccaaaagtggtgtcttccaaaatcaattgtggtcactgcaacaaatttttgtccaccaaacaatgcacttccaaataat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11591504 tgagataaaatgtgttaatgaccaaaagtggtgtcttccaaaatcaattgtggtcactgcaacaaatttttgtcctccaaacaatgcacttccaaataat 11591603  T
Q  201 gcaggtggttggtgtaaccctcctcttcatcatttt 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  11591604 gcaggtggttggtgtaaccctcctcttcatcatttt 11591639  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 27477653 - 27477562
Alignment:
Q  1 catgtggatatgggaacttgtatagccaagggtatgggactaacacagctgctttaagcactgctctattcaacagtggattaagctgtgga 92  Q
    ||||||||||||| || |||||||||||||| ||||| || |||||||| ||  ||||||||||| | ||||||| ||| ||||||||||||    
T  27477653 catgtggatatggaaatttgtatagccaaggatatggaaccaacacagcagcactaagcactgctttgttcaacaatggtttaagctgtgga 27477562  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 27488878 - 27488787
Alignment:
Q  1 catgtggatatgggaacttgtatagccaagggtatgggactaacacagctgctttaagcactgctctattcaacagtggattaagctgtgga 92  Q
    ||||||||||||| || || ||||||||||| ||||| || |||||||| ||  ||||||||||| | ||||||| ||| ||||||||||||    
T  27488878 catgtggatatggaaatttatatagccaaggatatggaaccaacacagcagcactaagcactgctttgttcaacaatggtttaagctgtgga 27488787  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 42965939 - 42966027
Alignment:
Q  3 tgtggatatgggaacttgtatagccaagggtatgggactaacacagctgctttaagcactgctctattcaacagtggattaagctgtgg 91  Q
    ||||| ||||| || |||||||||||||| ||||| || ||||| |||||  ||||||||||||| ||||||| |||||| || |||||    
T  42965939 tgtggttatggaaatttgtatagccaaggctatggaaccaacactgctgcactaagcactgctcttttcaacaatggattgagttgtgg 42966027  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 42974370 - 42974458
Alignment:
Q  3 tgtggatatgggaacttgtatagccaagggtatgggactaacacagctgctttaagcactgctctattcaacagtggattaagctgtgg 91  Q
    ||||| ||||| || |||||||||||||| ||||| || ||||| |||||  |||| |||||||| ||||||| |||||| || |||||    
T  42974370 tgtggttatggaaatttgtatagccaaggctatggaaccaacactgctgcactaagtactgctcttttcaacaatggattgagttgtgg 42974458  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 236
Target Start/End: Complemental strand, 31831997 - 31831764
Alignment:
Q  3 tgtggatatgggaacttgtatagccaagggtatgggactaacacagctgctttaagcactgctctattcaacagtggattaagctgtggagcatgttttg 102  Q
    ||||||||||| ||| | || || ||||||||||| || ||||| |||||||| || || || || ||||||| ||| |||||||||||  | || | ||    
T  31831997 tgtggatatggtaacctttacagtcaagggtatggaacaaacactgctgctttgagtacagcacttttcaacaatggcttaagctgtggctcttgctatg 31831898  T
Q  103 agataaaatgtgttaatgaccaaaagtggtgtcttccaaaatcaattgtggtcactgcaacaaatttttgtccaccaaacaatgcacttccaaataatgc 202  Q
    | || |  ||||  |||||||| |  ||||| |||||    || |||||||||||||| || ||||| |||||||||||||||||  | ||||| ||||     
T  31831897 aaatcaggtgtgccaatgaccatagatggtgccttcctggttccattgtggtcactgccaccaatttctgtccaccaaacaatgccttaccaaacaatga 31831798  T
Q  203 aggtggttggtgtaaccctcctcttcatcatttt 236  Q
     ||||||||||||||||||||||| || ||||||    
T  31831797 tggtggttggtgtaaccctcctctccaacatttt 31831764  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 135
Target Start/End: Complemental strand, 23858849 - 23858756
Alignment:
Q  42 aacacagctgctttaagcactgctctattcaacagtggattaagctgtggagcatgttttgagataaaatgtgttaatgaccaaaagtggtgtc 135  Q
    |||||||| || |||||||||||| | ||||||| ||| ||||||||||| || |||||||||||||| ||||  |||||| || |||||||||    
T  23858849 aacacagcagcattaagcactgctttgttcaacaatggtttaagctgtggtgcttgttttgagataaagtgtgcaaatgacaaagagtggtgtc 23858756  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 3814993 - 3814858
Alignment:
Q  1 catgtggatatgggaacttgtatagccaagggtatgggactaacacagctgctttaagcactgctctattcaacagtggattaagctgtggagcatgttt 100  Q
    ||||||||||||| ||||||||||| ||||| ||||||||||| ||||| ||  | ||||||||  ||||||||| ||| || || ||||| ||||| |     
T  3814993 catgtggatatggaaacttgtatagtcaaggttatgggactaatacagcagcacttagcactgcattattcaacaatggtttgagttgtggtgcatgcta 3814894  T
Q  101 tgagataaaatgtgttaatgaccaaaagtggtgtct 136  Q
    ||| || ||||||| || ||||| ||| ||||||||    
T  3814893 tgaaattaaatgtgctagtgacccaaaatggtgtct 3814858  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 121
Target Start/End: Complemental strand, 2867233 - 2867115
Alignment:
Q  3 tgtggatatgggaacttgtatagccaagggtatgggactaacacagctgctttaagcactgctctattcaacagtggattaagctgtggagcatgttttg 102  Q
    ||||||||||| ||| | ||||||||||| ||||| || || ||||| || || |||||||| |||||||||| |||||| || ||||| ||||||| ||    
T  2867233 tgtggatatggaaacctttatagccaaggttatggaacaaatacagcagcattgagcactgcactattcaacaatggattgagttgtggtgcatgttatg 2867134  T
Q  103 agataaaatgtgttaatga 121  Q
    | || |||||||| |||||    
T  2867133 aaattaaatgtgtgaatga 2867115  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 22314254 - 22314154
Alignment:
Q  3 tgtggatatgggaacttgtatagccaagggtatgggactaacacagctgctttaagcactgctctattcaacagtggattaagctgtggagcatgttttg 102  Q
    ||||||||||||||| | || |||||||| |||||    |||||||| ||  ||||||| || |||||||||| ||| ||||| ||||||||||||||||    
T  22314254 tgtggatatgggaacctatacagccaaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttgtggagcatgttttg 22314155  T
Q  103 a 103  Q
    |    
T  22314154 a 22314154  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 18301633 - 18301451
Alignment:
Q  1 catgtggatatgggaacttgtatagccaagggtatgggactaacacagctgctttaagcactgctctattcaacagtggattaagctgtggagcatgttt 100  Q
    ||||||||||||| ||| | || || ||||| ||||| || ||||| |||||||||||||| ||| | ||||||||||| |||||||||||  | |||||    
T  18301633 catgtggatatggaaacctatacagtcaaggttatggaacaaacactgctgctttaagcacagctttgttcaacagtggtttaagctgtggttcttgttt 18301534  T
Q  101 tgagataaaatgtgttaatgaccaaaagtggtgtcttccaaaatcaattgtggtcactgcaacaaatttttgtccaccaaaca 183  Q
    |||||| |  |||| |  |||||  || |||||||||||    || ||| |||||||||| || ||||| ||||| |||||||    
T  18301533 tgagattaggtgtgctggtgaccgtaaatggtgtcttcctggctctattttggtcactgctactaatttctgtcctccaaaca 18301451  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 41491266 - 41491176
Alignment:
Q  1 catgtggatatgggaacttgtatagccaagggtatgggactaacacagctgctttaagcactgctctattcaacagtggattaagctgtgg 91  Q
    ||||||| ||||| ||||||||||| ||||| |||||   ||||||||| || |||||||| || |||||||||| |||| |||| |||||    
T  41491266 catgtggttatggaaacttgtatagtcaaggttatggagttaacacagcagcattaagcacagcactattcaacaatggactaagttgtgg 41491176  T

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