View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5169_high_23 (Length: 239)
Name: NF5169_high_23
Description: NF5169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5169_high_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 27 - 218
Target Start/End: Complemental strand, 52968112 - 52967921
Alignment:
| Q |
27 |
aaattaagatacatgtggaaggaaagattaagtcaacttttgcttgttctaatgctaaagtgtaactgtaaattgattctgaaacaaagatttgttttgg |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52968112 |
aaattaagatacatgtggaaggaaagattaagtcaacttttgcttgttctaatgctaaagtgtaactgtaaattgattctgaaacaaagatttgttttgg |
52968013 |
T |
|
| Q |
127 |
ataagaaatagcatggcaatgtagggccacgtatgggttgaaagaatttgggaatcaaatgataaagatgttgaattgtgagatgagatgta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
52968012 |
ataagaaatagcatggcaatgtagggccacgtataggttgaaagaatttgggaatcaaatgataaagttgttgaactgtgagatgagatgta |
52967921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 52962089 - 52961964
Alignment:
| Q |
93 |
tgtaaattgattctgaaacaaagatttgttttggataagaaatagcatggcaatgtagggccacgtatgggttgaaagaatttgggaatcaaatgataaa |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
52962089 |
tgtaaattgattctgaaacaaagatttgttttggataagaaatagcatggcaatgtagggccacgtataggttgaaagaatttgggaatcaaatgataaa |
52961990 |
T |
|
| Q |
193 |
gatgttgaattgtgagatgagatgta |
218 |
Q |
| |
|
| ||||||| |||||||||||||||| |
|
|
| T |
52961989 |
gttgttgaactgtgagatgagatgta |
52961964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University