View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5169_high_6 (Length: 459)
Name: NF5169_high_6
Description: NF5169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5169_high_6 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0771 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 459
Target Start/End: Original strand, 54618655 - 54619097
Alignment:
| Q |
19 |
tttcagtcccttaataatttagtttaaggttcgattcccgaccgatgcgtataaaaaacataaattatattcttaaatgggtctcaattatctcgaagaa |
118 |
Q |
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| T |
54618655 |
tttcagtcccttaataatttagtttaaggtttgattcccgaccgatgcgtataaaaaacataaattatatccttaaatggatctcaattatctcgaagaa |
54618754 |
T |
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| Q |
119 |
ttaatcttcacaattacgttcagatgataccttggtttacnnnnnnnttataatctgtaagaacaactagtaacaaaatgataaaagaatcattagtnnn |
218 |
Q |
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| T |
54618755 |
ttaatcttcacaattacgttcagatgataccttggtttacaaaaaaattataatctgtaagaacaactagtaacaaaatgataaaagaatcattagtaaa |
54618854 |
T |
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| Q |
219 |
nnnnnnnn-----gaataaaagaatcataaatcgcaatacaatgaacacaatttttgtttacgcaaaccggccaagtgtgcctacattcgtgactacata |
313 |
Q |
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| T |
54618855 |
aaaaaagaaaaaagaataaaagaatcataaatcgcaatacaatgaacacaatctttgtttacgcaaaccggccaagtgtgcctacattcgtgactacata |
54618954 |
T |
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| Q |
314 |
gtagctatacttatgatctatattccaacaattttcatgctgaaccgtgaaagcgatagccctcgcaccccagtcgcctcctacaacaaccaattggacc |
413 |
Q |
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| T |
54618955 |
gtagctatacttatgatctatattccaacaattttcatgctgaaccgtgacagcga---ccctcgcaccccagtcgcctcctacaacaaccaattggacc |
54619051 |
T |
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| Q |
414 |
taacacacgttttggccaaacacaagggcaggggcggagggagctt |
459 |
Q |
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| T |
54619052 |
taacacacgttttgaccaaacacaagggcaggggcagagggagctt |
54619097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 458
Target Start/End: Complemental strand, 13951107 - 13951061
Alignment:
| Q |
412 |
cctaacacacgttttggccaaacacaagggcaggggcggagggagct |
458 |
Q |
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| T |
13951107 |
cctaacacacgtttgggtcaaacgcaagggtaggggcggagggagct |
13951061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 458
Target Start/End: Complemental strand, 3247 - 3201
Alignment:
| Q |
412 |
cctaacacacgttttggccaaacacaagggcaggggcggagggagct |
458 |
Q |
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| T |
3247 |
cctaacacacgtttgggtcaaacgcaagggtaggggcggagggagct |
3201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 404 - 456
Target Start/End: Complemental strand, 6938345 - 6938293
Alignment:
| Q |
404 |
caattggacctaacacacgttttggccaaacacaagggcaggggcggagggag |
456 |
Q |
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| T |
6938345 |
caattgggactaacacacgtttgggccaaactcaagggcaggagcagagggag |
6938293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 407 - 459
Target Start/End: Complemental strand, 39129349 - 39129297
Alignment:
| Q |
407 |
ttggacctaacacacgttttggccaaacacaagggcaggggcggagggagctt |
459 |
Q |
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| T |
39129349 |
ttgggcctaacacacgtttgacccaaacacaagggcatgggtggagggagctt |
39129297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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