View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5169_high_8 (Length: 417)
Name: NF5169_high_8
Description: NF5169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5169_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 15 - 401
Target Start/End: Complemental strand, 13994513 - 13994127
Alignment:
| Q |
15 |
tatagacaatgatattctattgatggacaaaacttttggctttgacaccgcggttgaagaagcgcaaagagcaatatattctgcatatatagaggtaaat |
114 |
Q |
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| T |
13994513 |
tatagacaatgatattctattgatggacaaaacttttggctttgacaccgcggttgaagaagcgcaaagagcaatatattctgcatatatagaggtaaat |
13994414 |
T |
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| Q |
115 |
tacttgataatgaatcaatctgacaaacccagtattgttttctagttaataaatactatcatatttaaatcttttgctcgtcttattaggcgcatagtgc |
214 |
Q |
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| T |
13994413 |
tacttgataatgaatcaatctgacaaacccagtattgttttctagttaataaatactatcatatttaaatcttttgctcgtcttattaggcgcatagtgc |
13994314 |
T |
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| Q |
215 |
atatcacggaatcgggattgtgaaattaatgggtcgtagcagtggattcatagcaatgcaatcttccttagccagtggacagattgatgtatgcctaatt |
314 |
Q |
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| T |
13994313 |
atatcatggaatcgggattgtgaaattaatgggtcgtagcagtggattcatagcaatgcaatcttccttagccagtggacagattgatgtatgcctaatt |
13994214 |
T |
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| Q |
315 |
cctgaggtatgtaagttaaacattgcgcctagaattctctctgtcgtatagataaactgatactagttctatctgtggttcaaaggt |
401 |
Q |
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| T |
13994213 |
cctgaggtatgtaagttaaacattgcgcctagaattctctctgtcgtatagataaactgatactagttctatctgtggttcaaaggt |
13994127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 28880027 - 28879932
Alignment:
| Q |
22 |
aatgatattctattgatggacaaaacttttggctttgacaccgcggttgaagaagcgcaaagagcaatatattctgcatatatagaggtaaattac |
117 |
Q |
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| T |
28880027 |
aatgatattctattgatggataaaacatttggctttgatactgcagtggaagaagctcaaagagcaataaattctgcatacattgaggtaaattac |
28879932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 197 - 327
Target Start/End: Complemental strand, 28879852 - 28879722
Alignment:
| Q |
197 |
ttattaggcgcatagtgcatatcacggaatcgggattgtgaaattaatgggtcgtagcagtggattcatagcaatgcaatcttccttagccagtggacag |
296 |
Q |
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||||||||| |||||||||||||| ||||| ||| ||||||| || ||||| ||||| ||||| ||||||||||||||| ||||| || | ||||||||| |
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| T |
28879852 |
ttattaggcacatagtgcatatcatggaattggggttgtgaagttgatgggccgtagtagtgggttcatagcaatgcaagcttccctatctagtggacag |
28879753 |
T |
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| Q |
297 |
attgatgtatgcctaattcctgaggtatgta |
327 |
Q |
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| T |
28879752 |
gttgacatatgtctgattcccgaggtatgta |
28879722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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