View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5169_high_9 (Length: 397)
Name: NF5169_high_9
Description: NF5169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5169_high_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 354
Target Start/End: Original strand, 43824863 - 43825199
Alignment:
| Q |
18 |
gagataagggccaaagcaagacccattttagcagcaaaaatgatctttcttggatcagaacgacccatttcccatgctttttcagcaacgagtttcatca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43824863 |
gagataagggccaaagcaagacccattttagcagcgaaaatgatcttccttggatcagaacgacccatttcccatgctttttcagcaacgagtttcatca |
43824962 |
T |
|
| Q |
118 |
tctctttgaatttgaccatattagattcctcttgttcttgtagcaaaccatttcctatatgatcaccacccttcattgagagaagtctttcctttttctc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43824963 |
tctctttgaatttgaccatattagattcctcttgttcttgtagcaaaccatttcctatatgatcaccacccttcattgagagaagtctttcctttttctc |
43825062 |
T |
|
| Q |
218 |
agctaaagtataacgaaatgatcctgatttcgctaactttggtgccatgattgattgctttgttgctaagcaaaagagagaaaagtagaaagttgaacac |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43825063 |
agctaaagtataacgaaatgatcctgatttcgctaactttggtgccatgattgattgctttgttgctaagcaaaagagagaaaagtagaaatttgaacac |
43825162 |
T |
|
| Q |
318 |
tattagtatatgaaagtgaacatggaagaagtgtgga |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43825163 |
tattagtatatgaaagtgaacatggaagaagtgtgga |
43825199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 29 - 303
Target Start/End: Original strand, 43816938 - 43817224
Alignment:
| Q |
29 |
caaagcaagacccattttagcagcaaaaatgatctttcttggatcagaacgacccatttcccatgctttttcagcaacgagtttcatcatctctttgaat |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
43816938 |
caaagcaagacccattttagcagcaaaaatgatctttcttggatcagaacgacccatttcccatgctttttcagcaatgagtttcatcatctttttgaac |
43817037 |
T |
|
| Q |
129 |
ttgaccatattagattcctcttgttcttgtagcaaaccatttcctat------------atgatcaccacccttcattgagagaagtctttcctttttct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||| ||||||| |||||||||||||||||| || |||||| ||||||| |||| |
|
|
| T |
43817038 |
ttgaccatattagattcctcttgttcttcttccaaaccaattcctataggagaataaccatgatcaccacccttcatggatagaagtttttccttcttct |
43817137 |
T |
|
| Q |
217 |
cagctaaagtataacgaaatgatcctgatttcgctaactttggtgccatgattgattgctttgttgctaagcaaaagagagaaaagt |
303 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43817138 |
cagctaaagtgtaaagaaatgatcctgatttcgctaactttggtgccataattgattgctttgttcgtaagcaaaagagagaaaagt |
43817224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 43831842 - 43831900
Alignment:
| Q |
29 |
caaagcaagacccattttagcagcaaaaatgatctttcttggatcagaacgacccattt |
87 |
Q |
| |
|
|||||||||||||||||| || ||||| || ||||| ||||||||||| |||||||||| |
|
|
| T |
43831842 |
caaagcaagacccatttttgcggcaaatataatcttccttggatcagaccgacccattt |
43831900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University