View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5169_low_13 (Length: 356)
Name: NF5169_low_13
Description: NF5169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5169_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 75 - 337
Target Start/End: Original strand, 9037820 - 9038100
Alignment:
| Q |
75 |
caattgctattacatgtggatgtcatatatatacctgcagctagtaaaccaccacatgccagatgttgtacaaaaaattattttaaatagaagtttttga |
174 |
Q |
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| T |
9037820 |
caattgctattacatttggatgtcatatatatacctgcagctagtaaaccatcacatgccagatgttgtacaaaaaaatattttgaa-acaagtttctga |
9037918 |
T |
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| Q |
175 |
t-------------------gatttattttgtatgcacatgcagctggtaaaccacaccatgccagatgatgtactcaacaatgtactgaaacaagtttc |
255 |
Q |
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| T |
9037919 |
ttactttgaaaaaatgtgatgatttattttgtatgcacatgcagctggtaaaccataccatgccagatgatgtactcaacaatgtattgaaacaagtttc |
9038018 |
T |
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| Q |
256 |
aaattactttgatccaacaacaattgaggagagaatgatctacggtaaaaagggttcatcagataaaatccgatggggccta |
337 |
Q |
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| T |
9038019 |
aaattactttgatccaacaacaattgaggagagaatgatctacggtaaaaagggttcatcagataaaatccgatggggccta |
9038100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 172 - 337
Target Start/End: Original strand, 9029870 - 9030035
Alignment:
| Q |
172 |
tgatgatttattttgtatgcacatgcagctggtaaaccacaccatgccagatgatgtactcaacaatgtactgaaacaagtttcaaattactttgatcca |
271 |
Q |
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| T |
9029870 |
tgatgatttattttgtacgcacctgcagctggtaaaccataccatgccagatgatgtactcaacaatgtattgaaacaagtttcaaattactttgatcca |
9029969 |
T |
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| Q |
272 |
acaacaattgaggagagaatgatctacggtaaaaagggttcatcagataaaatccgatggggccta |
337 |
Q |
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| T |
9029970 |
acaacaattgaggagagaatgatctacagtaaaaaggttccatcagataaaatcctatggggccta |
9030035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 258 - 333
Target Start/End: Original strand, 9046996 - 9047071
Alignment:
| Q |
258 |
attactttgatccaacaacaattgaggagagaatgatctacggtaaaaagggttcatcagataaaatccgatgggg |
333 |
Q |
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| T |
9046996 |
attactttgatccaacaacgattgatgagagaaaaatctaaggtaaaaagggttcatcagataaaatccgatgggg |
9047071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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