View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5169_low_14 (Length: 350)
Name: NF5169_low_14
Description: NF5169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5169_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 23)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 23408642 - 23408821
Alignment:
| Q |
1 |
tcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
23408642 |
tcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatac |
23408741 |
T |
|
| Q |
101 |
ccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctaca |
180 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
23408742 |
ccatcgctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaagatgtagatcttgtatgtttctaca |
23408821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 23868908 - 23868733
Alignment:
| Q |
1 |
tcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23868908 |
tcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagtttctcgaagatatcattgatgaaactgttcattattc |
23868809 |
T |
|
| Q |
101 |
ccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||| |
|
|
| T |
23868808 |
ccatggctttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc |
23868733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 23402250 - 23402071
Alignment:
| Q |
1 |
tcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
23402250 |
tcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatac |
23402151 |
T |
|
| Q |
101 |
ccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctaca |
180 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
23402150 |
ccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttctaca |
23402071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 23453474 - 23453653
Alignment:
| Q |
1 |
tcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
23453474 |
tcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatac |
23453573 |
T |
|
| Q |
101 |
ccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctaca |
180 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
23453574 |
ccatggccttgcttgagataccaatgtctgggtgaacatgattcagaactttgaagatgtagatcttgtatgtttctaca |
23453653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 24307399 - 24307224
Alignment:
| Q |
1 |
tcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24307399 |
tcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagctagtttctcgaagatatcattgatgaaactgttcattattc |
24307300 |
T |
|
| Q |
101 |
ccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||||| |
|
|
| T |
24307299 |
ccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatatagatcttgtatgtttc |
24307224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 23415811 - 23415986
Alignment:
| Q |
1 |
tcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
23415811 |
tcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatac |
23415910 |
T |
|
| Q |
101 |
ccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
176 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||| |
|
|
| T |
23415911 |
ccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc |
23415986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 23886003 - 23885828
Alignment:
| Q |
1 |
tcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
23886003 |
tcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatac |
23885904 |
T |
|
| Q |
101 |
ccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
176 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||| |
|
|
| T |
23885903 |
ccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc |
23885828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 26832911 - 26832736
Alignment:
| Q |
1 |
tcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || | |
|
|
| T |
26832911 |
tcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatac |
26832812 |
T |
|
| Q |
101 |
ccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| |
|
|
| T |
26832811 |
ccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc |
26832736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 26434200 - 26434025
Alignment:
| Q |
1 |
tcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || | |
|
|
| T |
26434200 |
tcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatac |
26434101 |
T |
|
| Q |
101 |
ccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| || ||||| |||||||||||||||||||| |
|
|
| T |
26434100 |
ccatggctttgcttgagataccaatgtctggatgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc |
26434025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 26435980 - 26435805
Alignment:
| Q |
1 |
tcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||| || | |
|
|
| T |
26435980 |
tcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggaagattcttgagtgagtttctcgaagatatcattgatgaaactgttcatgatac |
26435881 |
T |
|
| Q |
101 |
ccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| |
|
|
| T |
26435880 |
ccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc |
26435805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 34662143 - 34662318
Alignment:
| Q |
1 |
tcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattc |
100 |
Q |
| |
|
||||| ||||| || || ||||||||||| || | ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
34662143 |
tccctcgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatac |
34662242 |
T |
|
| Q |
101 |
ccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
176 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||| ||||| |
|
|
| T |
34662243 |
ccatggctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatcttgtaggtttc |
34662318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 214 - 334
Target Start/End: Original strand, 23416021 - 23416141
Alignment:
| Q |
214 |
gcagcggaaccaccttcctttggtagcttctttccggcctttggcttcttctctgctggagctttctcggcgacggtggacttcttctcctcagcaggtt |
313 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
23416021 |
gcagctgaaccaccttcctttggtagcttcttccctgcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagctggtt |
23416120 |
T |
|
| Q |
314 |
tcttctctgctggcttcttct |
334 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
23416121 |
tcttctccgctggcttcttct |
23416141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 214 - 334
Target Start/End: Complemental strand, 24307186 - 24307066
Alignment:
| Q |
214 |
gcagcggaaccaccttcctttggtagcttctttccggcctttggcttcttctctgctggagctttctcggcgacggtggacttcttctcctcagcaggtt |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| || |||| |
|
|
| T |
24307186 |
gcagcggaaccaccttcctttggtagcttctttcctgcctttggcttcttctcagcaggagccttctcggcgacggtggacttcttctcctctgcgggtt |
24307087 |
T |
|
| Q |
314 |
tcttctctgctggcttcttct |
334 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
24307086 |
tcttctctgctggcttcttct |
24307066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 217 - 334
Target Start/End: Original strand, 23453690 - 23453807
Alignment:
| Q |
217 |
gcggaaccaccttcctttggtagcttctttccggcctttggcttcttctctgctggagctttctcggcgacggtggacttcttctcctcagcaggtttct |
316 |
Q |
| |
|
||||| ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23453690 |
gcggagccaccttccttaggaagcttctttccagcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagcaggtttct |
23453789 |
T |
|
| Q |
317 |
tctctgctggcttcttct |
334 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
23453790 |
tctccgctggcttcttct |
23453807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 211 - 334
Target Start/End: Complemental strand, 23402040 - 23401917
Alignment:
| Q |
211 |
cctgcagcggaaccaccttcctttggtagcttctttccggcctttggcttcttctctgctggagctttctcggcgacggtggacttcttctcctcagcag |
310 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
23402040 |
cctgctgcagaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgg |
23401941 |
T |
|
| Q |
311 |
gtttcttctctgctggcttcttct |
334 |
Q |
| |
|
|||||||||| ||||||||||||| |
|
|
| T |
23401940 |
gtttcttctccgctggcttcttct |
23401917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 220 - 334
Target Start/End: Complemental strand, 23885784 - 23885670
Alignment:
| Q |
220 |
gaaccaccttcctttggtagcttctttccggcctttggcttcttctctgctggagctttctcggcgacggtggacttcttctcctcagcaggtttcttct |
319 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23885784 |
gaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctcagctggtttcttct |
23885685 |
T |
|
| Q |
320 |
ctgctggcttcttct |
334 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
23885684 |
ctgctggcttcttct |
23885670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 220 - 334
Target Start/End: Complemental strand, 26832692 - 26832578
Alignment:
| Q |
220 |
gaaccaccttcctttggtagcttctttccggcctttggcttcttctctgctggagctttctcggcgacggtggacttcttctcctcagcaggtttcttct |
319 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| || |||||||||| |
|
|
| T |
26832692 |
gaaccaccttcctttggaagcttctttccggcctttggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctggtttcttct |
26832593 |
T |
|
| Q |
320 |
ctgctggcttcttct |
334 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
26832592 |
ctgctggcttcttct |
26832578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 211 - 334
Target Start/End: Original strand, 23408852 - 23408975
Alignment:
| Q |
211 |
cctgcagcggaaccaccttcctttggtagcttctttccggcctttggcttcttctctgctggagctttctcggcgacggtggacttcttctcctcagcag |
310 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||| || ||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
23408852 |
cctgctgcagaaccaccttcctttggtagcttctttcctgccttgggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgg |
23408951 |
T |
|
| Q |
311 |
gtttcttctctgctggcttcttct |
334 |
Q |
| |
|
|||||||||| ||||||||||||| |
|
|
| T |
23408952 |
gtttcttctccgctggcttcttct |
23408975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 220 - 334
Target Start/End: Complemental strand, 26433981 - 26433867
Alignment:
| Q |
220 |
gaaccaccttcctttggtagcttctttccggcctttggcttcttctctgctggagctttctcggcgacggtggacttcttctcctcagcaggtttcttct |
319 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||||||| || |||||||||| |
|
|
| T |
26433981 |
gaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctggtttcttct |
26433882 |
T |
|
| Q |
320 |
ctgctggcttcttct |
334 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
26433881 |
ctgctggcttcttct |
26433867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 220 - 334
Target Start/End: Complemental strand, 26435761 - 26435647
Alignment:
| Q |
220 |
gaaccaccttcctttggtagcttctttccggcctttggcttcttctctgctggagctttctcggcgacggtggacttcttctcctcagcaggtttcttct |
319 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||||||| || |||||||||| |
|
|
| T |
26435761 |
gaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctggtttcttct |
26435662 |
T |
|
| Q |
320 |
ctgctggcttcttct |
334 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
26435661 |
ctgctggcttcttct |
26435647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 220 - 334
Target Start/End: Complemental strand, 23868689 - 23868575
Alignment:
| Q |
220 |
gaaccaccttcctttggtagcttctttccggcctttggcttcttctctgctggagctttctcggcgacggtggacttcttctcctcagcaggtttcttct |
319 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
23868689 |
gaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctctgcgggtttcttct |
23868590 |
T |
|
| Q |
320 |
ctgctggcttcttct |
334 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
23868589 |
ccgctggcttcttct |
23868575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 228 - 321
Target Start/End: Original strand, 34662370 - 34662463
Alignment:
| Q |
228 |
ttcctttggtagcttctttccggcctttggcttcttctctgctggagctttctcggcgacggtggacttcttctcctcagcaggtttcttctct |
321 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
34662370 |
ttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttcttctct |
34662463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 23451834 - 23451920
Alignment:
| Q |
1 |
tcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaa |
87 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||| |||||||| ||||||||| |
|
|
| T |
23451834 |
tcccttgaagtgattgttggcttcttgttgtagcgagcaagtctggagtattcttgagcgagcttctcaaagatatcgttgatgaaa |
23451920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 7 - 176
Target Start/End: Complemental strand, 41670570 - 41670401
Alignment:
| Q |
7 |
gaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatgg |
106 |
Q |
| |
|
||||||||||| |||||||||||||| | ||||||||||| ||||| ||||| |||||||| ||||||||||||||||| |||||||| || ||||| | |
|
|
| T |
41670570 |
gaagtgattgtaggcttcttgttgtacctcgcaagtctggaagattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccatag |
41670471 |
T |
|
| Q |
107 |
ctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
176 |
Q |
| |
|
| |||||||||||||||||||| || ||||| || || || || ||||| |||||||||||||| ||||| |
|
|
| T |
41670470 |
ccttgcttgagataccaatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttc |
41670401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 22 - 179
Target Start/End: Complemental strand, 40795924 - 40795767
Alignment:
| Q |
22 |
ttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagatac |
121 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||| || ||||| || ||||| ||||| | |
|
|
| T |
40795924 |
ttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaagatgtcattgatgaaactgttcatgatccccatagccttgctggagattc |
40795825 |
T |
|
| Q |
122 |
caatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctac |
179 |
Q |
| |
|
||||||| || ||||| || || || || ||||| |||||||||||||| |||||||| |
|
|
| T |
40795824 |
caatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctac |
40795767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 176
Target Start/End: Complemental strand, 29391621 - 29391467
Alignment:
| Q |
22 |
ttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagatac |
121 |
Q |
| |
|
||||||||||||||||| | ||| || | ||| ||||| || ||||| |||||||||||||||||||||||||| || ||||| |||||| || |||| |
|
|
| T |
29391621 |
ttcttgttgtaacgagccaatctagaagcttcctgagcgagtttctcaaagatatcattgatgaaactgttcataatccccatagctttggaagaaatac |
29391522 |
T |
|
| Q |
122 |
caatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
176 |
Q |
| |
|
| || || || ||||| ||||| || || ||||| ||||| ||||| || ||||| |
|
|
| T |
29391521 |
ctatatcaggatgaacctgtttgagaaccttgaagatgtaaatcttataggtttc |
29391467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 33216594 - 33216558
Alignment:
| Q |
48 |
tgattcttgagcaagcttctcgaagatatcattgatg |
84 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33216594 |
tgattcttgagcaagcttcacgaagatatcattgatg |
33216558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 176
Target Start/End: Original strand, 40180420 - 40180547
Alignment:
| Q |
49 |
gattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagta |
148 |
Q |
| |
|
||||| ||||| || ||||| |||||||| || |||||||||||||| |||||||| || |||||||| | ||| || || || ||||| |||||||| | |
|
|
| T |
40180420 |
gattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaa |
40180519 |
T |
|
| Q |
149 |
ctttgaatatgtagatcttgtatgtttc |
176 |
Q |
| |
|
| ||||| ||||| |||||||| ||||| |
|
|
| T |
40180520 |
ccttgaagatgtatatcttgtaggtttc |
40180547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 47317431 - 47317395
Alignment:
| Q |
48 |
tgattcttgagcaagcttctcgaagatatcattgatg |
84 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47317431 |
tgattcttgagcaagcttcacgaagatatcattgatg |
47317395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 176
Target Start/End: Complemental strand, 29684826 - 29684701
Alignment:
| Q |
51 |
ttcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtact |
150 |
Q |
| |
|
||||||||| || |||| |||||||| || | ||||||||| || | |||||| ||||| ||||| | ||||||| | || ||||||||||| || || |
|
|
| T |
29684826 |
ttcttgagcgagtttcttaaagatatcgttcacgaaactgttaataactcccatagctttacttgaaacaccaatggcaggatgaacttgtttgagaacc |
29684727 |
T |
|
| Q |
151 |
ttgaatatgtagatcttgtatgtttc |
176 |
Q |
| |
|
|||||||| || |||||||| ||||| |
|
|
| T |
29684726 |
ttgaatatatatatcttgtaggtttc |
29684701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 334
Target Start/End: Complemental strand, 14715420 - 14715358
Alignment:
| Q |
272 |
gagctttctcggcgacggtggacttcttctcctcagcaggtttcttctctgctggcttcttct |
334 |
Q |
| |
|
|||||||||| |||| ||| | ||||||||||| || ||||||||||| ||||||||||||| |
|
|
| T |
14715420 |
gagctttctcctcgacagtgtatttcttctcctctgcgggtttcttctcagctggcttcttct |
14715358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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