View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5169_low_15 (Length: 322)

Name: NF5169_low_15
Description: NF5169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5169_low_15
NF5169_low_15
[»] chr5 (1 HSPs)
chr5 (9-322)||(499083-499396)
[»] chr7 (6 HSPs)
chr7 (63-322)||(25638418-25638677)
chr7 (192-320)||(25485298-25485426)
chr7 (9-320)||(25477780-25478097)
chr7 (189-322)||(25446360-25446493)
chr7 (136-320)||(25503477-25503667)
chr7 (189-322)||(25435457-25435590)
[»] chr2 (5 HSPs)
chr2 (85-314)||(35054035-35054264)
chr2 (10-68)||(35104807-35104865)
chr2 (9-100)||(35044967-35045058)
chr2 (85-254)||(35176912-35177081)
chr2 (220-280)||(35183004-35183064)


Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 9 - 322
Target Start/End: Original strand, 499083 - 499396
Alignment:
Q  9 gattattctacttcctccacaaagcaatttcggatttatatgcaattcctgtaattgctcaatttgatcaatatcatcaagaactacaaggagctttatg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  499083 gattattctacttcctccacaaagcaatttcggatttatatgcaattcctgtaattgctcaatttgatcaatatcatcaagaactacaaggagttttatg 499182  T
Q  109 ttgtgtagtctatttcttacaatccgggatatttcggaaggactatatgcctctagattcttttctcttatagtttgatgaagaatttgtttctgcacag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  499183 ttgtgtagtctatttcttacaatccgggatatttcggaaggactatatgcctctagattcttttctcttatagtttgatgaagaatttgtttctgcacag 499282  T
Q  209 caacacattcaccatctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgagattttgtcatacaagaccgtcacaagagt 308  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  499283 caacacatccaccatctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgagattttgtcatacaagaccgtcacaagagt 499382  T
Q  309 tgtcttccctattc 322  Q
    ||||||||||||||    
T  499383 tgtcttccctattc 499396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 63 - 322
Target Start/End: Complemental strand, 25638677 - 25638418
Alignment:
Q  63 ttgctcaatttgatcaatatcatcaagaactacaaggagctttatgttgtgtagtctatttcttacaatccgggatatttcggaaggactatatgcctct 162  Q
    ||||||||||||||||| ||  ||||||||||||||||||||| |||| ||||| |||| ||||||||| |  | |||||| | |||||| || |  |||    
T  25638677 ttgctcaatttgatcaacattgtcaagaactacaaggagctttttgttttgtagcctatctcttacaattcttgctatttcaggaggactgtacgtgtct 25638578  T
Q  163 agattcttttctcttatagtttgatgaagaatttgtttctgcacagcaacacattcaccatctctataaattttgctaacattctcaataaagcaacaag 262  Q
    ||| | ||||||  ||||||| || ||||||||| |||||||||||||  |    | || |||  ||||||||||  ||||||||| ||  | |||| ||    
T  25638577 agaattttttcttctatagttcgacgaagaatttctttctgcacagcattagcaccgccctcttcataaattttgtgaacattctcgatgtaacaacgag 25638478  T
Q  263 cgtgaaactgatatgagattttgtcatacaagaccgtcacaagagttgtcttccctattc 322  Q
      | |||||||||||||||| ||||||||||||| ||  ||||||| ||||| |||||||    
T  25638477 tatcaaactgatatgagattctgtcatacaagacagttgcaagagtagtctttcctattc 25638418  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 192 - 320
Target Start/End: Complemental strand, 25485426 - 25485298
Alignment:
Q  192 aatttgtttctgcacagcaacacattcaccatctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgagattttgtcatac 291  Q
    ||||||||||||||||||||||    |||||||   ||||||||||||||| || |||||||| |||||||| | ||| ||| |||||||||||||||||    
T  25485426 aatttgtttctgcacagcaacagcaccaccatcctcataaattttgctaacgttttcaataaaacaacaagcatcaaattgaaatgagattttgtcatac 25485327  T
Q  292 aagaccgtcacaagagttgtcttccctat 320  Q
    || || ||  |||||||||||||||||||    
T  25485326 aaaacggtggcaagagttgtcttccctat 25485298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 320
Target Start/End: Original strand, 25477780 - 25478097
Alignment:
Q  9 gattattctacttcctccacaaagcaatttcggatttatatgcaattcctgtaattgctcaatttgatcaatatcatcaagaactacaaggagctttatg 108  Q
    |||||||||||||||| |||||||  || | ||||||||||||||||| |||| |||| ||  |||||||| ||  || || ||||  |||||||| |      
T  25477780 gattattctacttcctgcacaaagggatataggatttatatgcaattcttgtagttgcacagattgatcaacattgtcgaggactagtaggagcttcaac 25477879  T
Q  109 ttgtgtagtctatttcttacaatccgggatatttcggaaggactatatgcctctagattcttttctcttatagtttgatgaagaatttgtttctgcacag 208  Q
    |||| ||| || |||  || ||| |  |||||||| || ||||| ||| | || ||||| |||||| ||||||| ||||  |||||| ||||||||||||    
T  25477880 ttgtatagcctgtttgatataattccagatatttcagatggactgtatccttccagatttttttcttttatagtctgatctagaattcgtttctgcacag 25477979  T
Q  209 caacacattcaccatctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatat------gagattttgtcatacaagaccgtcac 302  Q
    ||| |    |||||||||||||||||||||| |||| |||||  || |||||||| | ||| ||||||      |||||| |||||||||||||  |  |    
T  25477980 caatagcaccaccatctctataaattttgctgacatcctcaacgaaacaacaagcatcaaattgatattgatgggagattgtgtcatacaagacatttgc 25478079  T
Q  303 aagagttgtcttccctat 320  Q
    |||||||||||| |||||    
T  25478080 aagagttgtctttcctat 25478097  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 322
Target Start/End: Complemental strand, 25446493 - 25446360
Alignment:
Q  189 aagaatttgtttctgcacagcaacacattcaccatctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgagattttgtca 288  Q
    |||||||||||||||||||||||||    ||||||||  ||||||||| ||||| || |||||||| |||||||| | ||| |||||||||||| |||||    
T  25446493 aagaatttgtttctgcacagcaacagcaccaccatcttcataaattttactaacgttttcaataaaacaacaagcatcaaattgatatgagattctgtca 25446394  T
Q  289 tacaagaccgtcacaagagttgtcttccctattc 322  Q
    ||||| ||  |  |||||| |||||| |||||||    
T  25446393 tacaaaactttagcaagagctgtctttcctattc 25446360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 320
Target Start/End: Original strand, 25503477 - 25503667
Alignment:
Q  136 gatatttcggaaggactatatgcctctagattcttttctcttatagtttgatgaagaatttgtttctgcacagcaacacattcaccatctctataaattt 235  Q
    |||||||| |||||||| ||||| || |||||   |||| | | ||||||||||||||||||| ||||||||||||      ||||||||||||||||||    
T  25503477 gatatttcagaaggactgtatgcatccagatttggttctttcagagtttgatgaagaatttgtctctgcacagcaatggcaccaccatctctataaattt 25503576  T
Q  236 tgctaacattctcaataaagcaacaagc------gtgaaactgatatgagattttgtcatacaagaccgtcacaagagttgtcttccctat 320  Q
    |||||||||| || | ||| ||||||||       ||| | |||| ||||||  ||||||||||||| ||  |||||||||||||||||||    
T  25503577 tgctaacattttcgaaaaaacaacaagcaccaaattgataatgatgtgagatcctgtcatacaagacagttgcaagagttgtcttccctat 25503667  T

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Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 322
Target Start/End: Original strand, 25435457 - 25435590
Alignment:
Q  189 aagaatttgtttctgcacagcaacacattcaccatctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgagattttgtca 288  Q
    ||||||||||||||||||||||| |    |||| | |  ||||| ||||||||| ||||||| ||| |||||||| | ||| |||||||||||| |||||    
T  25435457 aagaatttgtttctgcacagcaatagcaccaccgttttcataaaatttgctaacgttctcaacaaaacaacaagcatcaaattgatatgagattctgtca 25435556  T
Q  289 tacaagaccgtcacaagagttgtcttccctattc 322  Q
    ||||| || ||  ||||||||||||| |||||||    
T  25435557 tacaaaacggtggcaagagttgtctttcctattc 25435590  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 314
Target Start/End: Original strand, 35054035 - 35054264
Alignment:
Q  85 tcaagaactacaaggagctttatgttgtgtagtctatttcttacaatccgggatatttcggaaggactatatgcctctagattcttttctcttatagttt 184  Q
    |||||||||||||| | |||| |||||   ||||| || | |||||| |  |||||||| ||||| || |||| ||||||||  |||||   ||| ||||    
T  35054035 tcaagaactacaagaaactttctgttgcacagtcttttacgtacaattccagatatttcagaagggctgtatgtctctagatatttttcatctatggttt 35054134  T
Q  185 gatgaagaatttgtttctgcacagcaacacattcaccatctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgagatttt 284  Q
    |  |||| ||||||||||| | || ||||    ||||||||||||| |||||||| |||||||||||||| || |  || | ||| ||| | |||||| |    
T  35054135 gccgaaggatttgtttctggagagaaacagcaccaccatctctatagattttgcttacattctcaataaaacagcttgcatcaaattgagaggagattct 35054234  T
Q  285 gtcatacaagaccgtcacaagagttgtctt 314  Q
     ||||||||||| | | |||||||||||||    
T  35054235 atcatacaagacagacgcaagagttgtctt 35054264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 35104807 - 35104865
Alignment:
Q  10 attattctacttcctccacaaagcaatttcggatttatatgcaattcctgtaattgctc 68  Q
    ||||||||||| |||| |||||||||||| |||||||||  ||| ||||||||||||||    
T  35104807 attattctactacctcgacaaagcaatttgggatttatagccaactcctgtaattgctc 35104865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 35044967 - 35045058
Alignment:
Q  9 gattattctacttcctccacaaagcaatttcggatttatatgcaattcctgtaattgctcaatttgatcaatatcatcaagaactacaagga 100  Q
    |||||||||||| |||| |||||| ||||| |||||||||  ||| ||||| |||||||| | ||||| ||| |  ||||||||||| ||||    
T  35044967 gattattctactacctcaacaaagtaatttaggatttatagccaactcctgcaattgctctaattgattaatgttgtcaagaactactagga 35045058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 254
Target Start/End: Original strand, 35176912 - 35177081
Alignment:
Q  85 tcaagaactacaaggagctttatgttgtgtagtctatttcttacaatccgggatatttcggaaggactatatgcctctagattcttttctcttatagttt 184  Q
    |||||||||||||| | |||| |||||   ||||| || | |||||| |  |||||||| ||||| || |||| |||||| || ||||| ||| | | ||    
T  35176912 tcaagaactacaagaaactttttgttgcaaagtcttttacgtacaattccagatatttcagaagggctgtatgtctctaggtttttttcacttgtggctt 35177011  T
Q  185 gatgaagaatttgtttctgcacagcaacacattcaccatctctataaattttgctaacattctcaataaa 254  Q
    |  |||| ||||||||||| ||||||       |||||||| ||||||||||||| ||||||||||||||    
T  35177012 gccgaaggatttgtttctgtacagcagtggcaccaccatctttataaattttgcttacattctcaataaa 35177081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 280
Target Start/End: Original strand, 35183004 - 35183064
Alignment:
Q  220 ccatctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgaga 280  Q
    |||||| ||||||||||||| |||||||||||||| ||||  || | ||||||||| ||||    
T  35183004 ccatctttataaattttgcttacattctcaataaaacaacttgcatcaaactgataagaga 35183064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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