View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5169_low_17 (Length: 294)
Name: NF5169_low_17
Description: NF5169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5169_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 117 - 289
Target Start/End: Original strand, 3900413 - 3900585
Alignment:
| Q |
117 |
agttctactgtttgtttgattgctgctctccatattggttcttatattttatcgatcgacttcctattgatttttatatttgatagattttctcttcatg |
216 |
Q |
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| T |
3900413 |
agttctactgtttgtttgattgctgctctccatattggttcttatattttatcgatcgacttcctattgatttttatatttgatagtttttctctttatg |
3900512 |
T |
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| Q |
217 |
ggttgttatgtttggttacctctatatatatattacttcttttgtttcggttgttctctcctcctttgcttct |
289 |
Q |
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| T |
3900513 |
ggttgttatgtttggttacctctatatatatattacttcttttgtttcggttgttctctccttctttggttct |
3900585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 3900143 - 3900208
Alignment:
| Q |
55 |
aaaaattcaatgagttcttcagatgatgtaattgatagtggtgtgattggtggggcagccaaagtt |
120 |
Q |
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| T |
3900143 |
aaaaattcaatgagttcttcagatgatgtaattgatagtggtgtcattggtggggcagccaaagtt |
3900208 |
T |
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