View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5169_low_18 (Length: 274)
Name: NF5169_low_18
Description: NF5169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5169_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 36 - 240
Target Start/End: Original strand, 20873636 - 20873840
Alignment:
| Q |
36 |
atatttcatgtgaaagtacatcaacactatgacatgagttatattgctttgtatttgaaggcgaaactccaattacttttccaaagataacaagttacag |
135 |
Q |
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| T |
20873636 |
atatttgatgtgaaaatacgtaaacacgatggaatgagttgtattgctttgtattagaaggtgaaactccaattttttctccaaagataaaaggttaaga |
20873735 |
T |
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| Q |
136 |
tccgatttaccgtatcacaaacaaccaaatacgaagtaccagcatcgatattttaacaaaaaattcatcaaccacttacgaagaagcatttatcaatcca |
235 |
Q |
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| T |
20873736 |
atcaatttaccataacacaaacaaccaaatactaagtaccagcatctatatttgcacaaaaaattcatctaccacttatgaagaagcgtttttcaatcta |
20873835 |
T |
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| Q |
236 |
aatct |
240 |
Q |
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||||| |
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| T |
20873836 |
aatct |
20873840 |
T |
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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 36612304 - 36612387
Alignment:
| Q |
15 |
catcaagagcacgtgatcaatatatttcatgtgaaagtacatcaacactatgacatgagttatattgctttgtatttgaaggcg |
98 |
Q |
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| T |
36612304 |
catcaagagcacgtgatcaatatatttcatgtgaaagtacgtcaacactatgacatgagttgtattgctttgtatttgaaggcg |
36612387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 19656796 - 19656858
Alignment:
| Q |
171 |
gtaccagcatcgatattttaacaaaaaattcatcaaccacttacgaagaagcatttatcaatc |
233 |
Q |
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| T |
19656796 |
gtactagcatctatatttgcacaaaaaattcatctaccacttatgaagaagctcttatcaatc |
19656858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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