View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5169_low_4 (Length: 496)
Name: NF5169_low_4
Description: NF5169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5169_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 242 - 490
Target Start/End: Complemental strand, 6932865 - 6932603
Alignment:
| Q |
242 |
ggatttgaagctctgttgtgcttgtaatcctgtgcctgatcactttgtccttatgccgcttgatgagttctacatccatcgcatttcaatccttgaaaat |
341 |
Q |
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| T |
6932865 |
ggatttgaagctctgttgtgcttgtaatcctgtgcctgatcactctgtccttatgccgcttgatgagttctacatccatcgcatttcaatccttgaaaat |
6932766 |
T |
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| Q |
342 |
tttatatatcggttaggatctatgtatcacaaatgct--------------tgtccgacaccgacatgataaacactggtggttacatacaatcactttc |
427 |
Q |
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| T |
6932765 |
tttatatatcggttaggatctatgtatcacaaacgcttggtgtattttgagtgtccgacaccgacatgataaacacttgtggttacatacaatcacttcc |
6932666 |
T |
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| Q |
428 |
attttcgtaaattcttaccagagtctacatgtcgatgtcaatgttgtgtctggtgtctgtgct |
490 |
Q |
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| T |
6932665 |
attttcgtaaattcttaccagagtctacatgttgatgtcaatgttgtgtctggtgtctgtgct |
6932603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 6933080 - 6932882
Alignment:
| Q |
19 |
attttgggcgtaccaagatcaaattactcgaatttgataccctgtgaattggttcacgaacctagtgcagtgaattatgttactgtctaataaaccacca |
118 |
Q |
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| T |
6933080 |
attttgggcgtaccaagatcaaattacttgaatttgataccctgtgaattggttcacgaacctagtgcagtgaattatgttactgtctaataaaccacca |
6932981 |
T |
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| Q |
119 |
gaaatcaacaacttttcgacttctttttgaagttcaatgcctattgctattgaatcttttggattgtttgaggaaaaaagattatatttttagtcatga |
217 |
Q |
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| T |
6932980 |
gaaatcaacaacttttcgacttctttttgaagttcaatgcctattgctattgaatcttttggattgtttgaggaaaaaagattatatttttagtcatga |
6932882 |
T |
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