View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5169_low_7 (Length: 421)

Name: NF5169_low_7
Description: NF5169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5169_low_7
NF5169_low_7
[»] chr7 (11 HSPs)
chr7 (1-406)||(9948780-9949193)
chr7 (158-306)||(9942602-9942752)
chr7 (158-335)||(1032145-1032320)
chr7 (157-263)||(28782014-28782122)
chr7 (157-240)||(11621380-11621465)
chr7 (157-227)||(40871301-40871371)
chr7 (255-329)||(17193991-17194065)
chr7 (89-117)||(9482965-9482993)
chr7 (160-204)||(12622906-12622950)
chr7 (89-117)||(20549822-20549850)
chr7 (89-117)||(22602710-22602738)
[»] scaffold0300 (1 HSPs)
scaffold0300 (157-330)||(9503-9678)
[»] chr4 (9 HSPs)
chr4 (158-330)||(43499223-43499397)
chr4 (159-330)||(36651742-36651915)
chr4 (161-330)||(7743498-7743669)
chr4 (161-330)||(42718496-42718669)
chr4 (157-330)||(9896507-9896680)
chr4 (158-330)||(39059723-39059895)
chr4 (157-212)||(48640782-48640837)
chr4 (161-227)||(37870649-37870715)
chr4 (274-330)||(37870776-37870832)
[»] chr2 (15 HSPs)
chr2 (157-330)||(12410713-12410888)
chr2 (157-330)||(12422773-12422948)
chr2 (157-330)||(6764346-6764521)
chr2 (158-330)||(37647891-37648065)
chr2 (158-330)||(27271565-27271740)
chr2 (158-270)||(2702258-2702373)
chr2 (165-243)||(34394492-34394572)
chr2 (269-330)||(11031704-11031765)
chr2 (158-244)||(11031810-11031898)
chr2 (89-117)||(5367223-5367251)
chr2 (89-117)||(20242727-20242755)
chr2 (89-117)||(34691805-34691833)
chr2 (89-117)||(34714217-34714245)
chr2 (89-117)||(35056899-35056927)
chr2 (89-117)||(44860351-44860379)
[»] chr1 (16 HSPs)
chr1 (157-330)||(4532086-4532261)
chr1 (158-330)||(51534478-51534652)
chr1 (158-264)||(33766348-33766456)
chr1 (157-272)||(13182628-13182745)
chr1 (157-244)||(19227886-19227975)
chr1 (157-227)||(34549394-34549464)
chr1 (157-227)||(45432373-45432443)
chr1 (165-239)||(33936450-33936526)
chr1 (274-330)||(34549277-34549333)
chr1 (180-227)||(31911571-31911618)
chr1 (158-212)||(28756478-28756532)
chr1 (89-117)||(30749871-30749899)
chr1 (89-117)||(30771322-30771350)
chr1 (89-117)||(34371744-34371772)
chr1 (89-117)||(44482261-44482289)
chr1 (89-117)||(52903280-52903308)
[»] chr5 (8 HSPs)
chr5 (157-330)||(22639485-22639660)
chr5 (158-330)||(19021316-19021489)
chr5 (158-285)||(39143220-39143349)
chr5 (158-330)||(6537003-6537176)
chr5 (165-227)||(22580397-22580459)
chr5 (89-122)||(3966534-3966567)
chr5 (89-117)||(30502388-30502416)
chr5 (89-117)||(30542731-30542759)
[»] chr8 (14 HSPs)
chr8 (157-330)||(24503980-24504155)
chr8 (157-330)||(8444262-8444434)
chr8 (158-318)||(45547846-45548000)
chr8 (158-330)||(45540241-45540413)
chr8 (274-334)||(13089905-13089965)
chr8 (157-208)||(25582580-25582631)
chr8 (157-222)||(4034300-4034365)
chr8 (89-118)||(8847287-8847316)
chr8 (157-210)||(13089765-13089818)
chr8 (274-330)||(4034419-4034475)
chr8 (89-117)||(4786338-4786366)
chr8 (89-117)||(11927086-11927114)
chr8 (158-243)||(24581449-24581536)
chr8 (89-117)||(26902175-26902203)
[»] chr6 (9 HSPs)
chr6 (157-225)||(12912247-12912315)
chr6 (157-225)||(6029362-6029430)
chr6 (274-330)||(12912378-12912434)
chr6 (159-244)||(24393922-24394009)
chr6 (159-227)||(165542-165610)
chr6 (89-117)||(7027273-7027301)
chr6 (89-117)||(7265593-7265621)
chr6 (89-117)||(9025494-9025522)
chr6 (89-117)||(21924935-21924963)
[»] scaffold0041 (1 HSPs)
scaffold0041 (157-227)||(94911-94981)
[»] scaffold0037 (2 HSPs)
scaffold0037 (158-227)||(1008-1077)
scaffold0037 (274-330)||(891-947)
[»] chr3 (6 HSPs)
chr3 (158-212)||(15030113-15030167)
chr3 (89-117)||(7928481-7928509)
chr3 (89-117)||(8039835-8039863)
chr3 (180-212)||(20406426-20406458)
chr3 (89-117)||(25093533-25093561)
chr3 (89-117)||(40993335-40993363)
[»] scaffold0116 (1 HSPs)
scaffold0116 (92-121)||(9932-9961)
[»] scaffold0036 (1 HSPs)
scaffold0036 (89-117)||(9747-9775)


Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 9949193 - 9948780
Alignment:
Q  1 atgaagcaaaaatattgacacaaagataggatatgatatagacaccaacacgccgacaccaataataatatatnnnnnnnnnnnnnnt------attcag 94  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||                     ||||||    
T  9949193 atgaagcaaaaatattgacacaaacatcggatatgatatagacaccaacacgccgacaccaataataatatataaaaaaaataaaaaataaaaaattcag 9949094  T
Q  95 tgtaattatatgtgtcggtgtcgcgtcaatatccacaccgatacgtgtccgacannnnnnnngaagaaactaaaatggattaaaatactgaaagcctgaa 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||    
T  9949093 tgtaattatatgtgtcggtgtcgcgtcaatatccacaccgatacgtgtccgacattttttttgaagaaactaaaatggattaaaatactgaaagcctgaa 9948994  T
Q  195 gatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatggccaaaacatgaacaaaatagaaggctaccctgttaca 292  Q
    ||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9948993 gatttcagcacaaggagtaccaaaaccccagctaaaagagtcaattacaagagtgccaaaaggccaaaacatgaacaaaatagaaggctaccctgttaca 9948894  T
Q  293 taaatattcctaagcaaagtaaagggttcaaccaccataaataagacacgcataattcaaaaagtgtccgtgcttcatagacagaccaccatattatcag 392  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| || ||||||||||||| ||||||||| |||||||    
T  9948893 taaatattcctaagcaaggtaaagggttcaaccaccatgaataagacacgcataatccaaaaagtatcggtgcttcatagactgaccaccatgttatcag 9948794  T
Q  393 ggagatggaggtgc 406  Q
    ||||||||||||||    
T  9948793 ggagatggaggtgc 9948780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 158 - 306
Target Start/End: Original strand, 9942602 - 9942752
Alignment:
Q  158 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaaga--gtcaattacaagagtgccaaatgg 255  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||  ||||||| || |||| |  ||||||||||||||||||||| ||    
T  9942602 aagaaactaaaatggattaaaatactgaaagtctggagatttcagcacaaggagtgtcaaaacctcaactaaaatagtcaattacaagagtgccaaaagg 9942701  T
Q  256 ccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaag 306  Q
    |||||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  9942702 ccaaaacaagaacaaaaaagaaggctactctgttacataaatattcctaag 9942752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 158 - 335
Target Start/End: Complemental strand, 1032320 - 1032145
Alignment:
Q  158 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct--aagagtcaattacaagagtgcc-aaatg 254  Q
    ||||||||||| |||| |||| ||||||||||||| ||||||||||||| ||| |   ||||||||||||  ||||||||||||||||| |||| ||| |    
T  1032320 aagaaactaaattggactaaattactgaaagcctggagatttcagcacagggaatgctaaaaccccagctgaaagagtcaattacaagaatgccaaaacg 1032221  T
Q  255 gccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccataaata 335  Q
    |||||||||||||||||| |     |||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||    
T  1032220 gccaaaacatgaacaaaaaa-----ctaccctgttacataaatattcctaagcaaggtaaatggttcaaccaccatgaata 1032145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 157 - 263
Target Start/End: Original strand, 28782014 - 28782122
Alignment:
Q  157 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct--aagagtcaattacaagagtgccaaatg 254  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||  ||||||||||||||||||||||||| |    
T  28782014 gaagaaactaaaatggattaaaatactgaaagcctggagatttcagcacaaggagtgccaaaaccccagctaaaagagtcaattacaagagtgccaaaag 28782113  T
Q  255 gccaaaaca 263  Q
    |||||||||    
T  28782114 gccaaaaca 28782122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 11621465 - 11621380
Alignment:
Q  157 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct--aagagtcaattac 240  Q
    |||||| ||||||||||||| | ||||||||||||| |||||||||||||||||||  |||||||||||||  |||||||||||||    
T  11621465 gaagaagctaaaatggattatattactgaaagcctggagatttcagcacaaggagtgccaaaaccccagctgaaagagtcaattac 11621380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 40871301 - 40871371
Alignment:
Q  157 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct 227  Q
    |||||| ||||||||||||| | || | |||||||| |||||||||||||||||||  ||||| |||||||    
T  40871301 gaagaagctaaaatggattatattattaaaagcctggagatttcagcacaaggagtgccaaaatcccagct 40871371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 329
Target Start/End: Original strand, 17193991 - 17194065
Alignment:
Q  255 gccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccacca 329  Q
    ||||||||| |  ||||| |||| |||||||| ||||| ||||||||| || ||| ||||||| |||||||||||    
T  17193991 gccaaaacaagctcaaaaaagaaagctaccctattacaaaaatattcccaaacaaggtaaaggattcaaccacca 17194065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 117
Target Start/End: Original strand, 9482965 - 9482993
Alignment:
Q  89 attcagtgtaattatatgtgtcggtgtcg 117  Q
    |||||||||||||||||||||||||||||    
T  9482965 attcagtgtaattatatgtgtcggtgtcg 9482993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 12622906 - 12622950
Alignment:
Q  160 gaaactaaaatggattaaaatactgaaagcctgaagatttcagca 204  Q
    ||||||||||||||||| | ||||||||||||| |||||| ||||    
T  12622906 gaaactaaaatggattatattactgaaagcctggagattttagca 12622950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 117
Target Start/End: Original strand, 20549822 - 20549850
Alignment:
Q  89 attcagtgtaattatatgtgtcggtgtcg 117  Q
    |||||||||||||||||||||||||||||    
T  20549822 attcagtgtaattatatgtgtcggtgtcg 20549850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 22602738 - 22602710
Alignment:
Q  89 attcagtgtaattatatgtgtcggtgtcg 117  Q
    |||||||||||||||||||||||||||||    
T  22602738 attcagtgtaattatatgtgtcggtgtcg 22602710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 157 - 330
Target Start/End: Complemental strand, 9678 - 9503
Alignment:
Q  157 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatg 254  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||  ||||| |||||||||  |||||| ||||||||||||||||||    
T  9678 gaagaaactaaaatggattaaaatactaaaagcctgaagatttcagcacaagaagtgtcaaaatcccagctaaaagagtcagttacaagagtgccaaatg 9579  T
Q  255 gccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 330  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9578 gccaaaacatgaacaaaatagaagactaccctgttacataaatattcctaagcaaggtaaagggttcaaccaccat 9503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 158 - 330
Target Start/End: Complemental strand, 43499397 - 43499223
Alignment:
Q  158 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatgg 255  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||||  |||||||||||||||  ||||||||||||||||||||||| ||    
T  43499397 aagaaactaaaatggattaaaatactgaaagcttggagatttcagcacaaggagtgccaaaaccccagctaaaagagtcaattacaagagtgccaaaagg 43499298  T
Q  256 ccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 330  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43499297 ccaaaacaagaacaaaaaagaaggctaccctgttacataaatattcctaagcaaggtaaagggttcaaccaccat 43499223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 159 - 330
Target Start/End: Original strand, 36651742 - 36651915
Alignment:
Q  159 agaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatggc 256  Q
    |||||||||||||||||||||||  |||||  || |||||||||||||||||||  |||||||||||||||  |||||| ||||||||||||||||||||    
T  36651742 agaaactaaaatggattaaaatatcgaaagtttggagatttcagcacaaggagtgccaaaaccccagctaaaagagtcagttacaagagtgccaaatggc 36651841  T
Q  257 caaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 330  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  36651842 caaaacatgaacaaaatagaaggttaccatgttacataaatattcctaagcaaggtaaagggttcaaccaccat 36651915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 161 - 330
Target Start/End: Complemental strand, 7743669 - 7743498
Alignment:
Q  161 aaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatggcca 258  Q
    ||||||||||||||||||| ||||||||| || |||||||||||||||||||  ||||||   ||||||  |||||||||||||||||| |||| |||||    
T  7743669 aaactaaaatggattaaaaaactgaaagcatggagatttcagcacaaggagtgccaaaacttaagctaaaagagtcaattacaagagtgtcaaaaggcca 7743570  T
Q  259 aaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 330  Q
    ||||| |||||||| |||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||    
T  7743569 aaacaagaacaaaaaagaaggctaccctgctacataaatattcctaaacaaggtaaagggttcaaccaccat 7743498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 161 - 330
Target Start/End: Complemental strand, 42718669 - 42718496
Alignment:
Q  161 aaactaaaatggattaaaatactgaaagcctgaagatttcagcac-aaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatggcc 257  Q
    ||||||||||||||||||| |||||||||||| |||||||||||| |||||||   |||||||| |||||  |||| ||||| |||||||||||| ||||    
T  42718669 aaactaaaatggattaaaaaactgaaagcctggagatttcagcaccaaggagtgctaaaaccccggctaaaagagttaattataagagtgccaaaaggcc 42718570  T
Q  258 aaaacatgaacaaaata-gaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 330  Q
    |||||| |||||||| | ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  42718569 aaaacaagaacaaaaaaagaaggctaccccgttacataaatattcctaagcaaggtaaagggttcaaccaccat 42718496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 157 - 330
Target Start/End: Original strand, 9896507 - 9896680
Alignment:
Q  157 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct--aagagtcaattacaagagtgccaaatg 254  Q
    |||||||||||||||||| ||| || ||||||| || | |||| ||||||||||||  ||||||||||| |  || |||||||| ||||| |||||||      
T  9896507 gaagaaactaaaatggataaaattagtgaaagcttggaaatttaagcacaaggagtgccaaaaccccagatgaaaaagtcaattgcaagaatgccaaaac 9896606  T
Q  255 -gccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 330  Q
     ||||||||| ||||||||   ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  9896607 tgccaaaacaggaacaaaa---aaggctaccctgttacataaatattcccaagcaaggtaaagggttcaaccaccat 9896680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 158 - 330
Target Start/End: Original strand, 39059723 - 39059895
Alignment:
Q  158 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct--aagagtcaattacaagagtg-ccaaatg 254  Q
    ||||||||||||||||||||| ||||||||| ||||||| ||||||||||| |||  |||||||| ||||  |||||| |||||||||| || | ||| |    
T  39059723 aagaaactaaaatggattaaattactgaaagtctgaagaattcagcacaagcagtgccaaaacccaagctgaaagagttaattacaagaatgtcaaaacg 39059822  T
Q  255 gccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 330  Q
    ||||||||| ||||||||   |||||||| |||||||||||||||||  | |||| ||||| ||||||||||||||    
T  39059823 gccaaaacaggaacaaaa---aaggctactctgttacataaatattcgcaggcaaggtaaatggttcaaccaccat 39059895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 48640837 - 48640782
Alignment:
Q  157 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagt 212  Q
    ||||||||||||||||| || | ||||||| |||||||||||||||||||||||||    
T  48640837 gaagaaactaaaatggaatatattactgaacgcctgaagatttcagcacaaggagt 48640782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 37870649 - 37870715
Alignment:
Q  161 aaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct 227  Q
    |||||||||||||||| | |||| |||| ||| |||||||||||||||||||  |||||||||||||    
T  37870649 aaactaaaatggattatattactcaaagtctggagatttcagcacaaggagtgccaaaaccccagct 37870715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 330
Target Start/End: Original strand, 37870776 - 37870832
Alignment:
Q  274 agaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 330  Q
    |||| ||| |||||||||| ||||||||  |||||| ||||||| ||||||||||||    
T  37870776 agaatgctgccctgttacaaaaatattctcaagcaaggtaaaggattcaaccaccat 37870832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 157 - 330
Target Start/End: Complemental strand, 12410888 - 12410713
Alignment:
Q  157 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatg 254  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||||||||||||  ||||||||||||||||||||||| |    
T  12410888 gaagaaactaaaatggattaaaatactgaaagcctggagatttcatcacaaagagtgacaaaaccccagctaaaagagtcaattacaagagtgccaaaag 12410789  T
Q  255 gccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 330  Q
    ||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  12410788 gccaaaacaagaacaaaaaagaaggctaccttgttacataaatattcctaagcaaggtaaagggttcaaccaccat 12410713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 157 - 330
Target Start/End: Complemental strand, 12422948 - 12422773
Alignment:
Q  157 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatg 254  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||||||||||||  ||||||||||||||||||||||| |    
T  12422948 gaagaaactaaaatggattaaaatactgaaagcctggagatttcatcacaaagagtgacaaaaccccagctaaaagagtcaattacaagagtgccaaaag 12422849  T
Q  255 gccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 330  Q
    ||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  12422848 gccaaaacaagaacaaaaaagaaggctaccttgttacataaatattcctaagcaaggtaaagggttcaaccaccat 12422773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 157 - 330
Target Start/End: Complemental strand, 6764521 - 6764346
Alignment:
Q  157 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatg 254  Q
    |||||||||||||||||||||||||||||||||  | ||||||||||| |||||||  |||||||||||||||  ||||||||||||||||||||||| |    
T  6764521 gaagaaactaaaatggattaaaatactgaaagctcggagatttcagcataaggagtgtcaaaaccccagctaaaagagtcaattacaagagtgccaaaag 6764422  T
Q  255 gccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 330  Q
    ||||||||| |||||||| | |||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||    
T  6764421 gccaaaacaagaacaaaaaataaggctaccctgctacataaatattcataagcaaggtaaagggttcaaccaccat 6764346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 158 - 330
Target Start/End: Complemental strand, 37648065 - 37647891
Alignment:
Q  158 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatgg 255  Q
    |||||| ||||||||||||||||||||||||  || |||||||||||||||||||  ||||||| |||||||  |||||||||||||||||| |||| ||    
T  37648065 aagaaattaaaatggattaaaatactgaaagtttggagatttcagcacaaggagtgccaaaacctcagctaaaagagtcaattacaagagtgtcaaaagg 37647966  T
Q  256 ccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 330  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||    
T  37647965 ccaaaacatgaacaaaaaagaaggctaccatgttacataaatattcctaagcaaggtaaagggtccaaccaccat 37647891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 158 - 330
Target Start/End: Complemental strand, 27271740 - 27271565
Alignment:
Q  158 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct--aagagtcaattacaagagtg-ccaaatg 254  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||  |||||| ||||||  ||||||||||| ||| |||| | |||||    
T  27271740 aagaaactaaaatagattaaattactgaaagcctggagatttcagcacaaggagtgtcaaaactccagctgaaagagtcaattccaaaagtgtcaaaatg 27271641  T
Q  255 gccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 330  Q
    ||||||||| ||| |||| ||||| ||| | |||||||||| |||||| |||||| ||||||||||||||||||||    
T  27271640 gccaaaacaggaataaaaaagaagactatcttgttacataagtattcccaagcaaggtaaagggttcaaccaccat 27271565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 158 - 270
Target Start/End: Original strand, 2702258 - 2702373
Alignment:
Q  158 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct--aagagtcaattacaagagtgcc-aaatg 254  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||  ||||||||||||||||| |||| ||| |    
T  2702258 aagaaactaaaatggattaaaatactgaaagcctcaagatttcagcacaaggagtgccaaaaccccagctgaaagagtcaattacaagaatgccaaaacg 2702357  T
Q  255 gccaaaacatgaacaa 270  Q
    ||||||| ||||||||    
T  2702358 gccaaaatatgaacaa 2702373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 165 - 243
Target Start/End: Original strand, 34394492 - 34394572
Alignment:
Q  165 taaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct--aagagtcaattacaag 243  Q
    ||||||| |||| | |||||||||||| ||||||||| ||||||||||  |||||||||||||  ||||||||||||||||    
T  34394492 taaaatgaattatattactgaaagcctaaagatttcaacacaaggagtgccaaaaccccagctgaaagagtcaattacaag 34394572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 330
Target Start/End: Complemental strand, 11031765 - 11031704
Alignment:
Q  269 aaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 330  Q
    |||| |||| ||| |||||||||| ||||||||| |||||| ||||| | ||||||||||||    
T  11031765 aaaaaagaatgctgccctgttacaaaaatattcccaagcaaggtaaatgattcaaccaccat 11031704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 244
Target Start/End: Complemental strand, 11031898 - 11031810
Alignment:
Q  158 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct--aagagtcaattacaaga 244  Q
    ||||| |||||||| || | | || |||||| ||| ||||||||||| |||||||  |||||||||||||  ||||||||| |||||||    
T  11031898 aagaagctaaaatgaatgatattattgaaagtctggagatttcagcataaggagtgccaaaaccccagctgaaagagtcaaatacaaga 11031810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 117
Target Start/End: Original strand, 5367223 - 5367251
Alignment:
Q  89 attcagtgtaattatatgtgtcggtgtcg 117  Q
    |||||||||||||||||||||||||||||    
T  5367223 attcagtgtaattatatgtgtcggtgtcg 5367251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 20242755 - 20242727
Alignment:
Q  89 attcagtgtaattatatgtgtcggtgtcg 117  Q
    |||||||||||||||||||||||||||||    
T  20242755 attcagtgtaattatatgtgtcggtgtcg 20242727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 34691833 - 34691805
Alignment:
Q  89 attcagtgtaattatatgtgtcggtgtcg 117  Q
    |||||||||||||||||||||||||||||    
T  34691833 attcagtgtaattatatgtgtcggtgtcg 34691805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 34714245 - 34714217
Alignment:
Q  89 attcagtgtaattatatgtgtcggtgtcg 117  Q
    |||||||||||||||||||||||||||||    
T  34714245 attcagtgtaattatatgtgtcggtgtcg 34714217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 117
Target Start/End: Original strand, 35056899 - 35056927
Alignment:
Q  89 attcagtgtaattatatgtgtcggtgtcg 117  Q
    |||||||||||||||||||||||||||||    
T  35056899 attcagtgtaattatatgtgtcggtgtcg 35056927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 117
Target Start/End: Original strand, 44860351 - 44860379
Alignment:
Q  89 attcagtgtaattatatgtgtcggtgtcg 117  Q
    |||||||||||||||||||||||||||||    
T  44860351 attcagtgtaattatatgtgtcggtgtcg 44860379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 3e-64; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 157 - 330
Target Start/End: Original strand, 4532086 - 4532261
Alignment:
Q  157 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatg 254  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||  ||||||||||| |||  ||||||||||||||||| |||||||    
T  4532086 gaagaaactaaaatggattaaaatactgaaagtctggagatttcagcacaaggagtgccaaaaccccaggtaaaagagtcaattacaagagtaccaaatg 4532185  T
Q  255 gccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 330  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||| || |||||||||||||||||    
T  4532186 gccaaaacatgaacaaaatagaaggataccttgttacataaatattcctaagcaaggtgaagggttcaaccaccat 4532261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 158 - 330
Target Start/End: Original strand, 51534478 - 51534652
Alignment:
Q  158 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatgg 255  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||  ||||||||| |||||  ||||||||||||||||||||||| ||    
T  51534478 aagaaactaaaatggattaaaataccgaaagcctggagatttcagcacaaggagtgccaaaacccctgctaaaagagtcaattacaagagtgccaaaagg 51534577  T
Q  256 ccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 330  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||| ||||||    
T  51534578 ccaaaacatgaacaaaatagaatgctaccctattacataaatattcctaagcaaggtaaagggttcaatcaccat 51534652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 158 - 264
Target Start/End: Complemental strand, 33766456 - 33766348
Alignment:
Q  158 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct--aagagtcaattacaagagtgccaaatgg 255  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||  ||||||||||| |  |||||||||||||||||||| |||| ||    
T  33766456 aagaaactaaaatggattaaaatactgaaagtctggagatttcagcacaaggagtgccaaaaccccagttaaaagagtcaattacaagagtgtcaaaagg 33766357  T
Q  256 ccaaaacat 264  Q
    |||||||||    
T  33766356 ccaaaacat 33766348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 157 - 272
Target Start/End: Complemental strand, 13182745 - 13182628
Alignment:
Q  157 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct--aagagtcaattacaagagtgccaaatg 254  Q
    ||||||| |||||| ||||||||||||||||||||| | ||||||| | |||||||  |||||||||| ||  ||||||||||||||||| | ||||| |    
T  13182745 gaagaaattaaaatagattaaaatactgaaagcctggaaatttcagtataaggagtgccaaaaccccaactaaaagagtcaattacaagaattccaaaag 13182646  T
Q  255 gccaaaacatgaacaaaa 272  Q
    ||||||||| ||| ||||    
T  13182645 gccaaaacaagaagaaaa 13182628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 157 - 244
Target Start/End: Original strand, 19227886 - 19227975
Alignment:
Q  157 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct--aagagtcaattacaaga 244  Q
    |||||| ||||||||||||| | ||||||||||||| |||||||||||||||||||  |||||||||||||  ||||||||| |||||||    
T  19227886 gaagaagctaaaatggattatattactgaaagcctggagatttcagcacaaggagtgccaaaaccccagctgaaagagtcaaatacaaga 19227975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 34549464 - 34549394
Alignment:
Q  157 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct 227  Q
    |||||| ||||||||||||| | |||| |||| ||| |||||||||||||||||||  |||||||||||||    
T  34549464 gaagaagctaaaatggattatattactaaaagtctggagatttcagcacaaggagtgccaaaaccccagct 34549394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 45432373 - 45432443
Alignment:
Q  157 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct 227  Q
    |||||| ||||||||||||| | |||| |||| ||| |||||||||||||||||||  |||||||||||||    
T  45432373 gaagaagctaaaatggattatattactaaaagtctggagatttcagcacaaggagtgccaaaaccccagct 45432443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 33936526 - 33936450
Alignment:
Q  165 taaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct--aagagtcaatta 239  Q
    |||||||||||| | ||||||||| ||| ||||||||| |||||||||  ||||| |||||||  ||||||||||||    
T  33936526 taaaatggattatattactgaaagtctggagatttcaggacaaggagtgccaaaatcccagctgaaagagtcaatta 33936450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 330
Target Start/End: Complemental strand, 34549333 - 34549277
Alignment:
Q  274 agaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 330  Q
    |||| ||| |||||||||| ||||||||| |||||| ||||||| ||||||||||||    
T  34549333 agaatgctgccctgttacaaaaatattcccaagcaaggtaaaggattcaaccaccat 34549277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 31911571 - 31911618
Alignment:
Q  180 tactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct 227  Q
    ||||||||||||||||||||||| |||||||||  |||||| ||||||    
T  31911571 tactgaaagcctgaagatttcagtacaaggagtgtcaaaacgccagct 31911618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 28756478 - 28756532
Alignment:
Q  158 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagt 212  Q
    ||||| |||||||| | || | ||||||| |||||||||||||||||||||||||    
T  28756478 aagaagctaaaatgaaatatattactgaatgcctgaagatttcagcacaaggagt 28756532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 117
Target Start/End: Original strand, 30749871 - 30749899
Alignment:
Q  89 attcagtgtaattatatgtgtcggtgtcg 117  Q
    |||||||||||||||||||||||||||||    
T  30749871 attcagtgtaattatatgtgtcggtgtcg 30749899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 117
Target Start/End: Original strand, 30771322 - 30771350
Alignment:
Q  89 attcagtgtaattatatgtgtcggtgtcg 117  Q
    |||||||||||||||||||||||||||||    
T  30771322 attcagtgtaattatatgtgtcggtgtcg 30771350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 117
Target Start/End: Original strand, 34371744 - 34371772
Alignment:
Q  89 attcagtgtaattatatgtgtcggtgtcg 117  Q
    |||||||||||||||||||||||||||||    
T  34371744 attcagtgtaattatatgtgtcggtgtcg 34371772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 117
Target Start/End: Original strand, 44482261 - 44482289
Alignment:
Q  89 attcagtgtaattatatgtgtcggtgtcg 117  Q
    |||||||||||||||||||||||||||||    
T  44482261 attcagtgtaattatatgtgtcggtgtcg 44482289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 117
Target Start/End: Original strand, 52903280 - 52903308
Alignment:
Q  89 attcagtgtaattatatgtgtcggtgtcg 117  Q
    |||||||||||||||||||||||||||||    
T  52903280 attcagtgtaattatatgtgtcggtgtcg 52903308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 7e-62; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 157 - 330
Target Start/End: Complemental strand, 22639660 - 22639485
Alignment:
Q  157 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatg 254  Q
    ||||||||||||||||||||||||||||||||  || |||||||| ||||||||||  ||||||||||| |||  |||||| |||||||||||||||||     
T  22639660 gaagaaactaaaatggattaaaatactgaaagtttggagatttcatcacaaggagtgccaaaaccccagttaaaagagtcagttacaagagtgccaaata 22639561  T
Q  255 gccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  22639560 gccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaggtaaatggttcaaccaccat 22639485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 158 - 330
Target Start/End: Complemental strand, 19021489 - 19021316
Alignment:
Q  158 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatgg 255  Q
    ||||||||||||||||||||| || ||||||| || ||||||||| | |||||||  |||||||||||||||  |||||||||||||||||||| || ||    
T  19021489 aagaaactaaaatggattaaattattgaaagcttggagatttcagtataaggagtgccaaaaccccagctaaaagagtcaattacaagagtgccgaaagg 19021390  T
Q  256 ccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 330  Q
    ||||||||||||||||| | |||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||    
T  19021389 ccaaaacatgaacaaaaaaaaaggctacccagttacat-aatattcctaagcaaggtaaagggttcaaccaccat 19021316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 158 - 285
Target Start/End: Original strand, 39143220 - 39143349
Alignment:
Q  158 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatgg 255  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||  ||||| |  ||||||  ||||||||||||||||||||||| ||    
T  39143220 aagaaactaaaatggattaaaataccgaaagcctggagatttcagcataaggagtgccaaaatcatagctaaaagagtcaattacaagagtgccaaaagg 39143319  T
Q  256 ccaaaacatgaacaaaatagaaggctaccc 285  Q
    ||||||||||||||||||||||||||||||    
T  39143320 ccaaaacatgaacaaaatagaaggctaccc 39143349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 158 - 330
Target Start/End: Complemental strand, 6537176 - 6537003
Alignment:
Q  158 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa-gagtcaattacaagagtgccaaat-gg 255  Q
    ||||||||||||||||| ||| ||||||||  ||| ||||||||||| |||||||  ||||| |  |||||| ||||||||||||| | || ||||  ||    
T  6537176 aagaaactaaaatggatgaaattactgaaactctggagatttcagcataaggagtgccaaaatctaagctaaagagtcaattacaaaaatgtcaaaaagg 6537077  T
Q  256 ccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 330  Q
    ||||||||  ||||||| | ||||||||| ||||| |||||||||   |||||| ||||||||||||||||||||    
T  6537076 ccaaaacagaaacaaaaaa-aaggctaccatgttatataaatattatcaagcaaggtaaagggttcaaccaccat 6537003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 22580397 - 22580459
Alignment:
Q  165 taaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct 227  Q
    ||||||||| || | |||||||||||| |||||||||| ||||| |||  |||||||||||||    
T  22580397 taaaatggaatatattactgaaagcctaaagatttcagtacaagaagtgtcaaaaccccagct 22580459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 122
Target Start/End: Original strand, 3966534 - 3966567
Alignment:
Q  89 attcagtgtaattatatgtgtcggtgtcgcgtca 122  Q
    ||||||||||||||||||||||||||||| ||||    
T  3966534 attcagtgtaattatatgtgtcggtgtcgtgtca 3966567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 30502416 - 30502388
Alignment:
Q  89 attcagtgtaattatatgtgtcggtgtcg 117  Q
    |||||||||||||||||||||||||||||    
T  30502416 attcagtgtaattatatgtgtcggtgtcg 30502388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 30542759 - 30542731
Alignment:
Q  89 attcagtgtaattatatgtgtcggtgtcg 117  Q
    |||||||||||||||||||||||||||||    
T  30542759 attcagtgtaattatatgtgtcggtgtcg 30542731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 3e-52; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 157 - 330
Target Start/End: Complemental strand, 24504155 - 24503980
Alignment:
Q  157 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatg 254  Q
    ||||||||||||||||||||||| ||||||||| |  ||||||||||||||||| |  ||||||| |||||||  |||||||||||||| |||||||| |    
T  24504155 gaagaaactaaaatggattaaaaaactgaaagcatagagatttcagcacaaggaatgccaaaacctcagctaaaagagtcaattacaagtgtgccaaaag 24504056  T
Q  255 gccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 330  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||    
T  24504055 gccaaaacaagaacaaaaaagaaggctaccctgttacataaatattcctaaacaaggtaaagggttcagccaccat 24503980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 157 - 330
Target Start/End: Original strand, 8444262 - 8444434
Alignment:
Q  157 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatg 254  Q
    ||||||||||||||||||||||||| |   |||||  |||||||||||||| ||||  ||||||||||| |||  |||||||||||||||||||||||||    
T  8444262 gaagaaactaaaatggattaaaataat---agcctagagatttcagcacaaagagtgccaaaaccccagttaaaagagtcaattacaagagtgccaaatg 8444358  T
Q  255 gccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 330  Q
    |  ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| |||||    
T  8444359 gttaaaacatgaacaaaatagaaggctatcctgttacataaatattcctaagcaaggtaaagagttcaacaaccat 8444434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 158 - 318
Target Start/End: Complemental strand, 45548000 - 45547846
Alignment:
Q  158 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct--aagagtcaattacaagagtgccaaatgg 255  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||  |||||||||||||  ||||||||||||||||| |        |    
T  45548000 aagaaactaaaatggattaaattactgaaagcctggagatttcagcacaaggagtgccaaaaccccagctgaaagagtcaattacaagaat--------g 45547909  T
Q  256 ccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaaggg 318  Q
    |||||||| |||||||| |||| ||||||||||||| |||||||||| |||||| ||||||||    
T  45547908 ccaaaacaggaacaaaaaagaaagctaccctgttacgtaaatattcccaagcaaggtaaaggg 45547846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 158 - 330
Target Start/End: Complemental strand, 45540413 - 45540241
Alignment:
Q  158 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaat-g 254  Q
    |||||||||||| |||||||| |||||||||||   ||||||||||||||||| |  |||||||||| ||||  ||||||||| ||||| ||| |||  |    
T  45540413 aagaaactaaaacggattaaattactgaaagcc---agatttcagcacaaggaatgccaaaaccccaactaaaagagtcaattgcaagaatgctaaaacg 45540317  T
Q  255 gccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 330  Q
    ||||||| | |||||||| |||| |||||| |||||  |||||||||| |||||| ||||||||||||||||||||    
T  45540316 gccaaaataggaacaaaaaagaaagctaccatgttatgtaaatattcccaagcaaggtaaagggttcaaccaccat 45540241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 13089905 - 13089965
Alignment:
Q  274 agaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccataaat 334  Q
    |||| ||| |||||||||| ||||||||| |||||| ||||||| ||||||||||||||||    
T  13089905 agaatgctgccctgttacaaaaatattcccaagcaaggtaaaggattcaaccaccataaat 13089965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 25582580 - 25582631
Alignment:
Q  157 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaag 208  Q
    ||||||||||||||||| || | ||||||| ||||||| |||||||||||||    
T  25582580 gaagaaactaaaatggaatatattactgaacgcctgaatatttcagcacaag 25582631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 4034300 - 4034365
Alignment:
Q  157 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccc 222  Q
    |||||| |||||||| |||| | |||| |||| |||||||||| ||||||||||||  ||||||||    
T  4034300 gaagaagctaaaatgaattatattactaaaagtctgaagattttagcacaaggagtgccaaaaccc 4034365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 118
Target Start/End: Original strand, 8847287 - 8847316
Alignment:
Q  89 attcagtgtaattatatgtgtcggtgtcgc 118  Q
    ||||||||||||||||||||||||||||||    
T  8847287 attcagtgtaattatatgtgtcggtgtcgc 8847316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 13089765 - 13089818
Alignment:
Q  157 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaagga 210  Q
    |||||| ||||||||||||| | |||| |||| ||| |||||||||||||||||    
T  13089765 gaagaagctaaaatggattatattactaaaagtctggagatttcagcacaagga 13089818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 330
Target Start/End: Original strand, 4034419 - 4034475
Alignment:
Q  274 agaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 330  Q
    |||| ||| |||||||||| ||||||||| |||||| ||||| | ||||||||||||    
T  4034419 agaatgctgccctgttacagaaatattcccaagcaaggtaaatgattcaaccaccat 4034475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 4786366 - 4786338
Alignment:
Q  89 attcagtgtaattatatgtgtcggtgtcg 117  Q
    |||||||||||||||||||||||||||||    
T  4786366 attcagtgtaattatatgtgtcggtgtcg 4786338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 11927114 - 11927086
Alignment:
Q  89 attcagtgtaattatatgtgtcggtgtcg 117  Q
    |||||||||||||||||||||||||||||    
T  11927114 attcagtgtaattatatgtgtcggtgtcg 11927086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 24581449 - 24581536
Alignment:
Q  158 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct--aagagtcaattacaag 243  Q
    ||||| |||||||| |||| | || |||||| ||||| ||||||| | |||||||  |||||||||||||  |||| |||||||||||    
T  24581449 aagaagctaaaatgaattatattattgaaagtctgaatatttcagtataaggagtgtcaaaaccccagctgaaagaatcaattacaag 24581536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 26902203 - 26902175
Alignment:
Q  89 attcagtgtaattatatgtgtcggtgtcg 117  Q
    |||||||||||||||||||||||||||||    
T  26902203 attcagtgtaattatatgtgtcggtgtcg 26902175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 12912247 - 12912315
Alignment:
Q  157 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 225  Q
    |||||| ||||||||||||| | |||| |||| ||| |||||||||||||||||||  |||||||||||    
T  12912247 gaagaagctaaaatggattatattactaaaagtctggagatttcagcacaaggagtgtcaaaaccccag 12912315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 6029430 - 6029362
Alignment:
Q  157 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 225  Q
    |||||| |||||||||| || | ||||||||  |||||||||||||||||||||||  ||||| |||||    
T  6029430 gaagaagctaaaatggaatatattactgaaaatctgaagatttcagcacaaggagtgccaaaatcccag 6029362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 330
Target Start/End: Original strand, 12912378 - 12912434
Alignment:
Q  274 agaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 330  Q
    |||| ||| |||||||||| ||||||||| |||||| ||||||| ||||||||||||    
T  12912378 agaatgctgccctgttacaaaaatattcccaagcaaggtaaaggattcaaccaccat 12912434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 244
Target Start/End: Complemental strand, 24394009 - 24393922
Alignment:
Q  159 agaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct--aagagtcaattacaaga 244  Q
    |||| ||||||| ||||| | |||| |||||||  |||||||||||||||||||  |||||||  ||||  |||||||||||||||||    
T  24394009 agaagctaaaattgattatattactaaaagccttgagatttcagcacaaggagtgccaaaaccttagctgaaagagtcaattacaaga 24393922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 165610 - 165542
Alignment:
Q  159 agaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct 227  Q
    |||||||||||||||||| | || | |||| ||  ||||||||||||||| |||  |||||||||||||    
T  165610 agaaactaaaatggattatattattaaaagtcttgagatttcagcacaagaagtgtcaaaaccccagct 165542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 117
Target Start/End: Original strand, 7027273 - 7027301
Alignment:
Q  89 attcagtgtaattatatgtgtcggtgtcg 117  Q
    |||||||||||||||||||||||||||||    
T  7027273 attcagtgtaattatatgtgtcggtgtcg 7027301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 7265621 - 7265593
Alignment:
Q  89 attcagtgtaattatatgtgtcggtgtcg 117  Q
    |||||||||||||||||||||||||||||    
T  7265621 attcagtgtaattatatgtgtcggtgtcg 7265593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 9025522 - 9025494
Alignment:
Q  89 attcagtgtaattatatgtgtcggtgtcg 117  Q
    |||||||||||||||||||||||||||||    
T  9025522 attcagtgtaattatatgtgtcggtgtcg 9025494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 21924963 - 21924935
Alignment:
Q  89 attcagtgtaattatatgtgtcggtgtcg 117  Q
    |||||||||||||||||||||||||||||    
T  21924963 attcagtgtaattatatgtgtcggtgtcg 21924935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 94981 - 94911
Alignment:
Q  157 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct 227  Q
    |||||| ||||||||||||| | || | |||||||| |||||||||||||||||||  ||||| |||||||    
T  94981 gaagaagctaaaatggattatattattaaaagcctggagatttcagcacaaggagtgccaaaatcccagct 94911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 1077 - 1008
Alignment:
Q  158 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct 227  Q
    ||||| ||||||||||||| | |||  |||| ||| ||||||||||| ||||||| ||||||||||||||    
T  1077 aagaagctaaaatggattatattacaaaaagtctggagatttcagcataaggagtgacaaaaccccagct 1008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 330
Target Start/End: Complemental strand, 947 - 891
Alignment:
Q  274 agaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 330  Q
    |||| ||| |||||||||| ||||||||| |||||| || |||| ||||||||||||    
T  947 agaatgctgccctgttacaaaaatattcccaagcaaggttaaggattcaaccaccat 891  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 15030167 - 15030113
Alignment:
Q  158 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagt 212  Q
    |||| |||||||| || || | |||||||||||||||||||||||||||| ||||    
T  15030167 aagagactaaaatagaatatattactgaaagcctgaagatttcagcacaaagagt 15030113  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 117
Target Start/End: Original strand, 7928481 - 7928509
Alignment:
Q  89 attcagtgtaattatatgtgtcggtgtcg 117  Q
    |||||||||||||||||||||||||||||    
T  7928481 attcagtgtaattatatgtgtcggtgtcg 7928509  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 8039863 - 8039835
Alignment:
Q  89 attcagtgtaattatatgtgtcggtgtcg 117  Q
    |||||||||||||||||||||||||||||    
T  8039863 attcagtgtaattatatgtgtcggtgtcg 8039835  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 20406458 - 20406426
Alignment:
Q  180 tactgaaagcctgaagatttcagcacaaggagt 212  Q
    ||||||| |||||||||||||||||||||||||    
T  20406458 tactgaacgcctgaagatttcagcacaaggagt 20406426  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 117
Target Start/End: Original strand, 25093533 - 25093561
Alignment:
Q  89 attcagtgtaattatatgtgtcggtgtcg 117  Q
    |||||||||||||||||||||||||||||    
T  25093533 attcagtgtaattatatgtgtcggtgtcg 25093561  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 40993363 - 40993335
Alignment:
Q  89 attcagtgtaattatatgtgtcggtgtcg 117  Q
    |||||||||||||||||||||||||||||    
T  40993363 attcagtgtaattatatgtgtcggtgtcg 40993335  T

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Target: scaffold0116 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 121
Target Start/End: Original strand, 9932 - 9961
Alignment:
Q  92 cagtgtaattatatgtgtcggtgtcgcgtc 121  Q
    ||||||||||||||||||||||||||||||    
T  9932 cagtgtaattatatgtgtcggtgtcgcgtc 9961  T

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Target: scaffold0036 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 9775 - 9747
Alignment:
Q  89 attcagtgtaattatatgtgtcggtgtcg 117  Q
    |||||||||||||||||||||||||||||    
T  9775 attcagtgtaattatatgtgtcggtgtcg 9747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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