View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5171-Insertion-1 (Length: 834)

Name: NF5171-Insertion-1
Description: NF5171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5171-Insertion-1
NF5171-Insertion-1
[»] chr5 (5 HSPs)
chr5 (13-686)||(16052724-16053396)
chr5 (718-826)||(16052533-16052643)
chr5 (371-531)||(15936203-15936363)
chr5 (583-661)||(15936391-15936469)
chr5 (92-196)||(42563729-42563836)
[»] chr3 (10 HSPs)
chr3 (374-511)||(36309075-36309212)
chr3 (78-268)||(36325811-36326001)
chr3 (78-268)||(36313433-36313623)
chr3 (340-435)||(36313269-36313364)
chr3 (78-127)||(36309477-36309526)
chr3 (141-195)||(29649466-29649520)
chr3 (466-512)||(36327440-36327486)
chr3 (78-155)||(36327788-36327865)
chr3 (322-435)||(36333336-36333449)
chr3 (466-511)||(36335970-36336015)


Alignment Details
Target: chr5 (Bit Score: 458; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 13 - 686
Target Start/End: Complemental strand, 16053396 - 16052724
Alignment:
Q  13 caaattttttgttccttaatatttgttgtttttatctggcannnnnnngatagtttggtaatttgaattttacagtggcagtcacctacgttccatgcgg 112  Q
    |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16053396 caaattttttgttccttaatatttgttgtttttatctggcatttttttgatagtttggtaatttaaattttacagtggcagtcacctacgttccatgcgg 16053297  T
Q  113 tttgtagattgctatgaaatttcggatgaaggatttattgaagttgcgaggaagcttccgctgttagaaaagcttaacatttcagataccagtctaactg 212  Q
    ||||||||||||||||||||||| || |||||||||| ||||| || ||||||||||||||||||||| ||||||  ||||||||||| ||| |||||||    
T  16053296 tttgtagattgctatgaaatttcagaagaaggatttagtgaagctgtgaggaagcttccgctgttagagaagcttgtcatttcagataacaggctaactg 16053197  T
Q  213 aggtatctattgcagtccttggccgatcttgccctcttttgaaatcacttaaatttagtagattgggggattacgccgccaagccttctgatgatttggc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||    
T  16053196 aggtatctattgcagtccttggccgatcttgccctcttttgaaatcacttaaaattagtagattgggggtttatgccgccaagccttctgatgatttggc 16053097  T
Q  313 cttagttactgctgatacgatgactaatctacgccatcttgatatcaagggagacagcctcactaatgttggtttgcttgccattcttgataagtgccct 412  Q
    |||||||| |||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||| ||||||    
T  16053096 cttagttattgctgatacgatgactaatctatgctatcttgatatcaagggagacaacctcactaatgatggtttgctcgccattcttgataaatgccct 16052997  T
Q  413 tttcttaaatctcttgacattcgacgatgttattctttggaattaagtataagtttgaagaaaaggtgcactgagcagatcaatcatttgcaactgccaa 512  Q
    |||||| ||||||||||| ||| | |||||  || | | |||||||||| ||||||| |||||||||||| ||| | |||||||||||||| ||||||||    
T  16052996 tttcttgaatctcttgaccttcaaggatgtcgttatctagaattaagtaaaagtttggagaaaaggtgcattgatccgatcaatcatttgcgactgccaa 16052897  T
Q  513 attcttatgactttgatgactatgattactcccctagttatgaatatgactttggcggagactatgatccttggtactactgaatgttgtagtattggtg 612  Q
    ||| ||||| ||||||||||||||||||||||||   || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  16052896 atttttatgtctttgatgactatgattactcccc---ttgtgaatatgactttggcggagactatgattcttggtactactgaatgttgtagtattggtg 16052800  T
Q  613 --atgatgaaaaataaggtttttatattatacggtggatttcttgtcatgtactccctctgatctcgaatgtaagc 686  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||    
T  16052799 atatgatgaaaaataaggtttttatattatacggtggatttcttgtcatgtactccctccggtctcaaatgtaagc 16052724  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 718 - 826
Target Start/End: Complemental strand, 16052643 - 16052533
Alignment:
Q  718 atgaagtatttatcgtgattcttgatgatactcatgctactgatgttttaaagga-tttgttgaagccaccctaattggcatgctttg-taaacaattgg 815  Q
    ||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||| |||||||||| || |||||||||||||||||| |||||||||||    
T  16052643 atgaagtatttattgtgatccttgatgatactcatgctaatgatgttttaaaggattttgttgaaggcaacctaattggcatgctttgttaaacaattgg 16052544  T
Q  816 ttaggactatc 826  Q
    |||||||||||    
T  16052543 ttaggactatc 16052533  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 371 - 531
Target Start/End: Original strand, 15936203 - 15936363
Alignment:
Q  371 ctcactaatgttggtttgcttgccattcttgataagtgcccttttcttaaatctcttgacattcgacgatgttattctttggaattaagtataagtttga 470  Q
    |||||||||| ||||||||| |||||||||||||| || ||||||||| ||||||||||| ||| | |||||  || | | ||||| |||  |||||||     
T  15936203 ctcactaatgatggtttgctcgccattcttgataaatggccttttcttgaatctcttgaccttcaaggatgtcgttatctcgaattgagtgaaagtttgg 15936302  T
Q  471 agaaaaggtgcactgagcagatcaatcatttgcaactgccaaattcttatgactttgatga 531  Q
    | |||||||||| ||| |  |||||||||||||||||||||| |  |||||||| ||||||    
T  15936303 aaaaaaggtgcattgatcgaatcaatcatttgcaactgccaattcgttatgactctgatga 15936363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 583 - 661
Target Start/End: Original strand, 15936391 - 15936469
Alignment:
Q  583 ttggtactactgaatgttgtagtattggtgatgatgaaaaataaggtttttatattatacggtggatttcttgtcatgt 661  Q
    ||||||||| ||||||||||||| || ||||||||||||||||| ||||||||||||||| ||| ||||||||||||||    
T  15936391 ttggtactagtgaatgttgtagtcttagtgatgatgaaaaataaagtttttatattatactgtgaatttcttgtcatgt 15936469  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 42563836 - 42563729
Alignment:
Q  92 agtcacctacgttccatgcggtttgtagattgctatgaaatttcggatgaaggatt---tattgaagttgcgaggaagcttccgctgttagaaaagctta 188  Q
    ||||||||||||| ||||||||||||| ||||| |   |||| |||||||||||||   || ||||| |||||| ||||||| |   ||||| ||||||     
T  42563836 agtcacctacgttgcatgcggtttgtaaattgcgaatcaattacggatgaaggattttctagtgaagctgcgagaaagcttcggaaattagacaagcttg 42563737  T
Q  189 acatttca 196  Q
    ||||||||    
T  42563736 acatttca 42563729  T

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Target: chr3 (Bit Score: 74; Significance: 2e-33; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 374 - 511
Target Start/End: Complemental strand, 36309212 - 36309075
Alignment:
Q  374 actaatgttggtttgcttgccattcttgataagtgcccttttcttaaatctcttgacattcgacgatgttattctttggaattaagtataagtttgaaga 473  Q
    |||||||||||||||| ||||||||||| |||||||||| | |||||||||||||||||||| |||||  ||| | | ||||| |||  |||||||||||    
T  36309212 actaatgttggtttgcatgccattcttgttaagtgccctctgcttaaatctcttgacattcgtcgatgacattatcttgaattgagtgaaagtttgaaga 36309113  T
Q  474 aaaggtgcactgagcagatcaatcatttgcaactgcca 511  Q
    ||||||||| ||| ||||||||| ||||||||||||||    
T  36309112 aaaggtgcattgatcagatcaatgatttgcaactgcca 36309075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 78 - 268
Target Start/End: Complemental strand, 36326001 - 36325811
Alignment:
Q  78 aattttacagtggcagtcacctacgttccatgcggtttgtagattgctatgaaatttcggatgaaggatttattgaagttgcgaggaagcttccgctgtt 177  Q
    |||||||||||||||||||||||| || ||||||| ||||| |||| |  |  ||  |  || ||||||||| |||||    ||| ||||||||||||||    
T  36326001 aattttacagtggcagtcacctactttgcatgcggcttgtaaattgttgggggatgacaaataaaggatttagtgaagccttgagaaagcttccgctgtt 36325902  T
Q  178 agaaaagcttaacatttcagataccagtctaactgaggtatctattgcagtccttggccgatcttgccctcttttgaaatcacttaaattt 268  Q
    ||| ||| || |||||||| || |   |||||||||||| ||| ||| || |||||| ||||||||||||||||||||||| |||||||||    
T  36325901 agagaaggttgacatttcacattcttatctaactgaggtctctcttgaagcccttggtcgatcttgccctcttttgaaatcgcttaaattt 36325811  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 268
Target Start/End: Complemental strand, 36313623 - 36313433
Alignment:
Q  78 aattttacagtggcagtcacctacgttccatgcggtttgtagattgctatgaaatttcggatgaaggatttattgaagttgcgaggaagcttccgctgtt 177  Q
    |||||||||||||||| |||||| ||  |||| || ||||||||||||     ||| | ||||||||||||| ||||| || ||| |||||||||| |||    
T  36313623 aattttacagtggcagacacctatgtcgcatggggcttgtagattgctcgaggattacagatgaaggatttagtgaagctgtgagaaagcttccgcggtt 36313524  T
Q  178 agaaaagcttaacatttcagataccagtctaactgaggtatctattgcagtccttggccgatcttgccctcttttgaaatcacttaaattt 268  Q
     || ||| ||   |||||| ||  |   |||||||| || ||| ||| || |||||| ||||| ||||||||||||||||| |||||||||    
T  36313523 ggagaaggttgtaatttcacatcactacctaactgatgtctctcttgaagcccttggtcgatcatgccctcttttgaaatcgcttaaattt 36313433  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 340 - 435
Target Start/End: Complemental strand, 36313364 - 36313269
Alignment:
Q  340 tctacgccatcttgatatcaagggagacagcctcactaatgttggtttgcttgccattcttgataagtgcccttttcttaaatctcttgacattcg 435  Q
    |||||||||||||||||| || ||| |||  |||||| |  ||||| |||| |||||| ||||||| |||||| ||||| | ||||||||||||||    
T  36313364 tctacgccatcttgatatgaaaggacacaagctcactgaacttggtgtgctcgccattattgataaatgccctcttcttgagtctcttgacattcg 36313269  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 36309526 - 36309477
Alignment:
Q  78 aattttacagtggcagtcacctacgttccatgcggtttgtagattgctat 127  Q
    |||||| ||||||||||||||| | |||||||||||| ||||||||||||    
T  36309526 aattttgcagtggcagtcacctgcattccatgcggttggtagattgctat 36309477  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 29649466 - 29649520
Alignment:
Q  141 aaggatttattgaagttgcgaggaagcttccgctgttagaaaagcttaacatttc 195  Q
    |||||||||||||||||||||  ||| ||||| |||| ||||||| |||||||||    
T  29649466 aaggatttattgaagttgcgaaaaagtttccgttgttggaaaagcataacatttc 29649520  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 466 - 512
Target Start/End: Complemental strand, 36327486 - 36327440
Alignment:
Q  466 tttgaagaaaaggtgcactgagcagatcaatcatttgcaactgccaa 512  Q
    ||||||||||||||||| ||| ||||||||  |||||||||||||||    
T  36327486 tttgaagaaaaggtgcattgaccagatcaaggatttgcaactgccaa 36327440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 36327865 - 36327788
Alignment:
Q  78 aattttacagtggcagtcacctacgttccatgcggtttgtagattgctatgaaatttcggatgaaggatttattgaag 155  Q
    |||||||||||||||||||||||| || |||| || ||||| ||||||   | ||| | ||||||||||||| |||||    
T  36327865 aattttacagtggcagtcacctactttgcatggggcttgtaaattgctcgaagattacagatgaaggatttactgaag 36327788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 435
Target Start/End: Complemental strand, 36333449 - 36333336
Alignment:
Q  322 tgctgatacgatgactaatctacgccatcttgatatcaagggagacagcctcactaatgttggtttgcttgccattcttgataagtgcccttttcttaaa 421  Q
    |||||| |||||| ||  |||| ||||||||||||| || ||| |||  |||||| |  ||||| |||| |||||| |||||||  ||||| ||||| |     
T  36333449 tgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaagctcactcaacttggtgtgctcgccattattgataaaggccctcttcttgag 36333350  T
Q  422 tctcttgacattcg 435  Q
    ||||||||||||||    
T  36333349 tctcttgacattcg 36333336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 466 - 511
Target Start/End: Complemental strand, 36336015 - 36335970
Alignment:
Q  466 tttgaagaaaaggtgcactgagcagatcaatcatttgcaactgcca 511  Q
    ||||||||||||||||| ||| ||||||||  ||||||||||||||    
T  36336015 tttgaagaaaaggtgcattgaccagatcaaggatttgcaactgcca 36335970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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