View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5171-Insertion-2 (Length: 827)
Name: NF5171-Insertion-2
Description: NF5171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5171-Insertion-2 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 469; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 299 - 827
Target Start/End: Original strand, 35680248 - 35680780
Alignment:
| Q |
299 |
caactttgttagttagtaacgtgttaaaatgtctttcagtttttcttaagttaaactagtgttataccttgtgttggaattttaaatttaaattttatgc |
398 |
Q |
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| T |
35680248 |
caactttgttagttagtaacgtgttgaaatgtctttcggtttttcttaagttaaactagtgttataccttgtgttggaattttagattttaattttatgc |
35680347 |
T |
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| Q |
399 |
atgtgtctaatactaattgagctaatagccaaatctatgctcaaaattatattaacaactgtcaaaatagtctttgaattttgcaaat----aaatacat |
494 |
Q |
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| T |
35680348 |
atgtgtctaatactaattgagctaatagccaaatctatgctcaaaattatattaacaactgtcaaaatagtctttgaattttgcaaattcataaatacat |
35680447 |
T |
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| Q |
495 |
tcataaatttgtaaattttgtatttgccaattcgcaaatatgagagactattttgaccgtcacttagagtttcgaggatcaatttgtctattaactcaat |
594 |
Q |
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| T |
35680448 |
tcataaatttgtaaattttgtatttgccaattcgcaaatatgagagactattttgaccgtcacttagagtttcgaggatcaatttgtctattaactcaat |
35680547 |
T |
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| Q |
595 |
agtatcaattgtccattcaacatataatttttgacttcaacatgttttggtatattaatttccactttagttctttagtcctaatatttgttagccctga |
694 |
Q |
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| T |
35680548 |
agtatcaattgtccattcaacatataatttttgacttcaacatgttttggtatatcaatttttactttagttctttagtcctaatatttgttagccctga |
35680647 |
T |
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| Q |
695 |
ctgttttcatcaataatttgtagcaattccagccaatgtgtcgctatacttcatagcatatatgcttaatatgctgcctaattttttatgcatttatatc |
794 |
Q |
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| T |
35680648 |
ctgttttcatcaataatttgtagcaattccagccaatgtgtcgccatacttcatagcatatatgcttaatatgctgcctaattttttatgcatttatatc |
35680747 |
T |
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| Q |
795 |
ctagggtttttcttg-tggaaaagattttggagg |
827 |
Q |
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| T |
35680748 |
cta-ggtttttcttgttggaaaagattttggagg |
35680780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 8 - 300
Target Start/End: Original strand, 35679933 - 35680225
Alignment:
| Q |
8 |
agaatccaatctttgtcttgttttgtgaatcaaagtcaaacacctttcttatctttattagaatctttcaggtccaaacgtggtcgtattcctccacggt |
107 |
Q |
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| T |
35679933 |
agaatccaatctttgtcttgttttgtgaatcaaagtcatacacctttcttatctttattagaatctttcaggtccaaacgtggtcgtattcctccacggt |
35680032 |
T |
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| Q |
108 |
ttcccagagatatggtactcctggcgccaccagatgttagctctcgccggtgccggtttcagagctatagctcctgattatagaggctacggactatccg |
207 |
Q |
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| T |
35680033 |
ttcccagagatatggtactcctggcgccaccagatgttagctctcgccggcgccggtttcagagctatagctcctgattatagagggtacggactatccg |
35680132 |
T |
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| Q |
208 |
actcgccacctgaaccggaaaagaccaccttcactcatcttctcaacgaccttctgcaaattcttgatgctcttgctatttctaaggtacaca |
300 |
Q |
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| T |
35680133 |
actcgccacctgaaccggaaaagaccaccttcactcatcttctcaacgaccttctgcaaattattgatgctctagctatttctaaggtacaca |
35680225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 73 - 299
Target Start/End: Original strand, 35663515 - 35663741
Alignment:
| Q |
73 |
tttcaggtccaaacgtggtcgtattcctccacggtttcccagagatatggtactcctggcgccaccagatgttagctctcgccggtgccggtttcagagc |
172 |
Q |
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| T |
35663515 |
tttcaggtccaaacgtggtcgtattcctccacggtttcccggagatatggtactcctggcgccaccagatgatagccgtcgccggtgccggtttcagagc |
35663614 |
T |
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| Q |
173 |
tatagctcctgattatagaggctacggactatccgactcgccacctgaaccggaaaagaccaccttcactcatcttctcaacgaccttctgcaaattctt |
272 |
Q |
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| T |
35663615 |
tattgcttttgattacagaggatacggactatccgactcgccacctgaaccggaaaagaccaccttcactcatcttctcaatgacctccttgcaattctt |
35663714 |
T |
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| Q |
273 |
gatgctcttgctatttctaaggtacac |
299 |
Q |
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| T |
35663715 |
gatgctctttctctttccaaggtacac |
35663741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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