View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5171-Insertion-3 (Length: 826)

Name: NF5171-Insertion-3
Description: NF5171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5171-Insertion-3
NF5171-Insertion-3
[»] chr6 (1 HSPs)
chr6 (7-826)||(29447522-29448341)


Alignment Details
Target: chr6 (Bit Score: 780; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 780; E-Value: 0
Query Start/End: Original strand, 7 - 826
Target Start/End: Complemental strand, 29448341 - 29447522
Alignment:
Q  7 agaatcattgcgaatgttagacacgaaagctgttgaatgcaacaaagaaaacaatatgccgttgctgagtaatattcgtgaagatgaatgcacttctggt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29448341 agaatcattgcgaatgttagacacgaaagctgttgaatgcaacaaagaaaacaatatgccgttgctgagtgatattcgtgaagatgaatgcacttctggt 29448242  T
Q  107 gctgcaagatttgccgaatgtctagaacaaaagggtgatttctctgatgatttggttaatacaatcaaaagaattgaatctcgcatttaggcttttaaac 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  29448241 gctgcaagatttgccgaatgtctagaacaaaagggtgatttctctgatgatttggttaatgcaatcaaaagaattgaatctcgcattttggcttttaaac 29448142  T
Q  207 tttgttccaagttggccgattccagtaagaacggtgcagttcgcaatcctttgaataaagtagctaattcgggaagtcccaaactacagagaaaagacag 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29448141 tttgttccaagttggccgattccagtaagaacggtgcagttcgcaatcctttgaataaagtagctaattcgggaagtcccaaactacagagaaaagacag 29448042  T
Q  307 tgctgctagaaatcagttgagttctaaaacacctatcttggaagaacgtaggttaatgaatcagcacacatgtaattcaagtcctaaaggtgaaaatttg 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29448041 tgctgctagaaatcagttgagttctaaaacacctatcttggaagaacataggttaatgaatcagcacacatgtaattcaagttctaaaggtgaaaatttg 29447942  T
Q  407 attccagaaaatgcagttgggaaaccatttttggctcgaaatgaatcattgagtcagagtcatgcagtatataagaaatgtgggcttcatactaatgccg 506  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29447941 attccagaaaatgcagttgagaaaccatttttggctcgaaatgaatcattgagtcagagtcatgcagtatataagaaatgtgggcttcatactaatgccg 29447842  T
Q  507 aatctgcaaaagacgtggatacactaaagcatattaatacaccgatggtatcaagagaagaattaagaaatgcgactagggttcaatcttcagtacaaaa 606  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29447841 aatctgcaaaagacgtggatacactaaagcatattaatacaccgatggtatcaagagaagaattaagaaatgcgactagggttcaaccttcagtacaaaa 29447742  T
Q  607 catggcaacgatggatagagttaggtcattgaaaaggttagttagtggtgataccaacttggggaatcaagctagtgagtgtattcgaggtttaagggtt 706  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29447741 catggcaacgatggatagagttaagtcattgaaaaggttagttagtggtgataccaacttggggaatcaagctagtgagtgtattcgaggtttaagggtt 29447642  T
Q  707 cctttgaatcaagacgatcttactaagaagccttccatgtttagttctcaaacaaatagggaaagtttggtccaaaaatcttcagtagcaagttggtcta 806  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29447641 cctttgaatctagacgatcttactaagaagccttccatgtttagttctcaaacaaatagggaaagtttggtccgaaaatcttcagtagcaagttggtcta 29447542  T
Q  807 agcctgatcagaatcataaa 826  Q
    ||||||||||||||||||||    
T  29447541 agcctgatcagaatcataaa 29447522  T

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