View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5171-Insertion-4 (Length: 722)
Name: NF5171-Insertion-4
Description: NF5171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5171-Insertion-4 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 7 - 372
Target Start/End: Original strand, 9033514 - 9033878
Alignment:
| Q |
7 |
agttaggtaccaactagtttttagttgctgtttttactttatagcagattagctgtaaatacatgtgttctacttttgccttgcagttttgccagtagaa |
106 |
Q |
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| T |
9033514 |
agttgggtaccaactagtttttagttgctgtttttactttatagcagattagctgtaaatacatgtgttctacttttgccttgca-ttttgccagtagaa |
9033612 |
T |
|
| Q |
107 |
gaatggatgtagctctcattgttaaccagcagcgtgacactgtgacaaaagtagcagaagaagagaggaccataactaaagtatgttatgatacagaatt |
206 |
Q |
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| T |
9033613 |
gaatggaggtagctctcattgttaaccagcaacgtgacactgtgacaaaagtagcagaagaagagaggaccataactaaagtatgttatgatacagaatt |
9033712 |
T |
|
| Q |
207 |
cttactccttttattaaacttagcaaatatattttataataaagaagtttctctttttcctttctaggcatgcagtagcattaatcaattaattaaacag |
306 |
Q |
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| T |
9033713 |
cttactccttttattaaacttagcaaatatattttataataaagaagtttctctttttcctttctaggcatgcagcagcattaatcaattaattaaacag |
9033812 |
T |
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| Q |
307 |
tcattaaccaaaataagccgtaggatttagttagattgtctgctgtcacaatttcctactgtcaca |
372 |
Q |
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| T |
9033813 |
tcattaaccaaaataagccgtaggatttagttagattgtctgctgtcacaatttcctactgtcaca |
9033878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 453 - 722
Target Start/End: Original strand, 9033959 - 9034230
Alignment:
| Q |
453 |
ttattatcaacagtgtattaattaaatacagacatcattcatcagacatgcacggatgtcaacattgataataatttnnnnnnn-ttacatacttcaatg |
551 |
Q |
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| T |
9033959 |
ttattatcaacagtgtattaattaaatacagacatcattcatcagacatgcacggatgtcaacattgataataatttaaaaaaaattacatactttgata |
9034058 |
T |
|
| Q |
552 |
taattaagcttgtgagtgttgaatatttgactcgtgttggacgcctgacaaa-cattcaatcaaaagtacgtcagttttacaaagctcaccgctcaattt |
650 |
Q |
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| T |
9034059 |
taattaaacttgtcagggttgaatatttgactcgtgttggacacctgacaaagcattcaatcaaaagcacgtcagttttacaaagctcgccgctcaattt |
9034158 |
T |
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| Q |
651 |
gyaaaaagatcggacaaatcatattttaaattaatagtattaagggttttgttaacttgtatcctaaggcac |
722 |
Q |
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| T |
9034159 |
gtaaaaagatcggacaaatcatattctaaattaatagtattaagggttttgttaacttgtatcctaaggcac |
9034230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 372 - 414
Target Start/End: Original strand, 9033930 - 9033972
Alignment:
| Q |
372 |
aaaattgacaaatgatcttaaccattagattattatcaacagt |
414 |
Q |
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| T |
9033930 |
aaaattgacaaatgatcttaaccattagattattatcaacagt |
9033972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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